Contig 005486:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031N08Sequence607011599 (2)ref|XP_009624287.1|4e-15PREDICTED: DNA ligase 1-like isoform X1 [Nicotiana tomentosiformis] ref|XP_00962737005486 (2)ref|XP_004245024.1|3e-06PREDICTED: RNA polymerase II degradation factor 1 [Solanum lycopersicum]
JMFF039O07Sequence568011599 (2)ref|XP_004245024.1|4e-08PREDICTED: RNA polymerase II degradation factor 1 [Solanum lycopersicum]741005486 (2)

Alignment

This contig is upended


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rJMFF031N08+                                                TAAAAAGCCTCAACGGAAGTCC
                      ____________________________________________________________
consensus                                                   TAAAAAGCCTCAACGGAAGTCC
 
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rJMFF031N08+          CTTCCTAAGCTGCCATCTGAGAAAACNTACATACCCAGCGAAACAAAGAAAGCTTCCCCT
rJMFF039O07+                                                     CAAAGAAAGCTTCCCCT
                      ____________________________________________________________
consensus             CTTCCTAAGCTGCCATCTGAGAAAACNTACATACCCAGCGAAACAAAGAAAGCTTCCCCT
 
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rJMFF031N08+          ATCAAAACTAGCATATCCAAGGAGATAACCGAAGTTGATTCCCAGCCCAATATTGTAGCC
rJMFF039O07+          ATCAAAACTAGCATATCCAAGGAGATAACCGAAGTTGATTCCCAGCCCAATATTGTAGCC
                      ____________________________________________________________
consensus             ATCAAAACTAGCATATCCAAGGAGATAACCGAAGTTGATTCCCAGCCCAATATTGTAGCC
 
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rJMFF031N08+          AAAGTAACTGATGAAGCTGAAGATGTTCATGCAAGTGAGACTGAGCCCAAGGAAAATGAC
rJMFF039O07+          AAAGTAACTGATGAAGCTGAAGATGTTCATGCAAGTGAGACTGAGCCCAAGGAAAATGAC
                      ____________________________________________________________
consensus             AAAGTAACTGATGAAGCTGAAGATGTTCATGCAAGTGAGACTGAGCCCAAGGAAAATGAC
 
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rJMFF031N08+          GAGGCAGATATGAGTCTGGTGCAGGAGCCTATCACAGTGGAGCGTTAAGAGCAAGCACTG
rJMFF039O07+          GAGGCAGATATGAGTCTGGTGCAGGAGCCTATCACAGTGGAGCGTTAAGAGCAAGCACTG
                      ____________________________________________________________
consensus             GAGGCAGATATGAGTCTGGTGCAGGAGCCTATCACAGTGGAGCGTTAAGAGCAAGCACTG
 
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rJMFF031N08+          AAAAGCTAAAACTATTGTATATTTATAAAGCAGCAGCCATAACGCCCTTCATGCCCAAAA
rJMFF039O07+          AAAAGCTAAAACTATTGTATATTTATAAAGCAGCAGCCATAACGCCCTTCATGCCCAAAA
                      ____________________________________________________________
consensus             AAAAGCTAAAACTATTGTATATTTATAAAGCAGCAGCCATAACGCCCTTCATGCCCAAAA
 
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rJMFF031N08+          CACCAGAAAGGCCTGAATAAGATGATTCGTTTTACAGATAAAAGGCATGAAAGATGTCTA
rJMFF039O07+          CACCAGAAAGGCCTGAATAAGATGATTCGTTTTACAGATAAAAGGCATGAAAGATGTCTA
                      ____________________________________________________________
consensus             CACCAGAAAGGCCTGAATAAGATGATTCGTTTTACAGATAAAAGGCATGAAAGATGTCTA
 
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rJMFF031N08+          GTAGGGGGATGATGTGTGTTCTGTCCATATTCAGCAACAATGTTTGGTTGTCTTATATGC
rJMFF039O07+          GTAGGGGGATGATGTGTGTTCTGTCCATATTCAGCAACAATGTTTGGTTGTCTTATATGC
                      ____________________________________________________________
consensus             GTAGGGGGATGATGTGTGTTCTGTCCATATTCAGCAACAATGTTTGGTTGTCTTATATGC
 
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rJMFF031N08+          GTTCTCTTCCTAGATTGTGGAGTGTGATCACTTCGAACTGCAAGCGAAAACTGTAAAATC
rJMFF039O07+          GTTCTCTTCCTAGATTGTGGAGTGTGATCACTTCGAACTGCAAGCGAAAACTGTAAAATC
                      ____________________________________________________________
consensus             GTTCTCTTCCTAGATTGTGGAGTGTGATCACTTCGAACTGCAAGCGAAAACTGTAAAATC
 
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rJMFF031N08+          TCAAGGTAATTAGCATCGCGATTTGTTGTTCTAGTTAACTCACATCAGACTAGCTGAAGA
rJMFF039O07+          TCAAGGTAATTAGCATCGCGATTTGTTGTTCTAGTTAACTCACATCAGACTAGCTGAAGA
                      ____________________________________________________________
consensus             TCAAGGTAATTAGCATCGCGATTTGTTGTTCTAGTTAACTCACATCAGACTAGCTGAAGA
 
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rJMFF031N08+          ATGGTTTTGGGGAGTTTGGGTTGCAGTGGTTGAAACTGTGTGGATGACCTTTTGCCTATT
rJMFF039O07+          ATGGTTTTGGGGAGTTTGGGTTGCAGTGGTTGAAACTGTGTGGATGACCTTTTGCCTATT
                      ____________________________________________________________
consensus             ATGGTTTTGGGGAGTTTGGGTTGCAGTGGTTGAAACTGTGTGGATGACCTTTTGCCTATT
 
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rJMFF031N08+          GTTTGTTAATTAAGGTGTGTGTCTATATTTGCTTAGAAAATTCTTTTTCTTCGCCGCCCT
rJMFF039O07+          GTTTGTTAATTAAGGTGTGTGTCTATATTTGCTTAGAAAATTCTTTTTCTTCGCCGCCCT
                      ____________________________________________________________
consensus             GTTTGTTAATTAAGGTGTGTGTCTATATTTGCTTAGAAAATTCTTTTTCTTCGCCGCCCT
 
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rJMFF031N08+          CCCCCTCTCTTGTGTTGTGTTATACAGAACTAAATATCAGTGTATAACCTTTAAT     
rJMFF039O07+          CCCCCTCTCTTGTGTTGTGTTATACAGAACTAAATATCAGTGTATAACCTTTAATTGTAC
                      ____________________________________________________________
consensus             CCCCCTCTCTTGTGTTGTGTTATACAGAACTAAATATCAGTGTATAACCTTTAATTGTAC
 
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rJMFF039O07+          ATTTTTTGAAGATATATGGATTGTTGTATTGCATCTGCCCTTTGCGAATTTCANCCAAGA
                      ____________________________________________________________
consensus             ATTTTTTGAAGATATATGGATTGTTGTATTGCATCTGCCCTTTGCGAATTTCANCCAAGA