Contig 005485:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002B22Sequence317007774 (5)ref|XP_011097013.1|3e-36PREDICTED: actin-related protein 4 isoform X2 [Sesamum indicum]714005485 (5)ref|XP_009774266.1|2e-121PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]
JMFF039I15Sequence579007774 (5)ref|XP_009612119.1|6e-114PREDICTED: actin-related protein 4 isoform X2 [Nicotiana tomentosiformis]827005485 (5)ref|XP_009774266.1|9e-78PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]
JMSF008H19Sequence366007774 (5)emb|CDO98459.1|5e-42unnamed protein product [Coffea canephora]794005485 (5)ref|XP_009774266.1|1e-116PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]
JMSF020K17Sequence662007774 (5)ref|XP_009612118.1|2e-118PREDICTED: actin-related protein 4 isoform X1 [Nicotiana tomentosiformis]785005485 (5)ref|XP_009774266.1|5e-100PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]
JMSF024D13Sequence662007774 (5)ref|XP_009612118.1|2e-118PREDICTED: actin-related protein 4 isoform X1 [Nicotiana tomentosiformis]814005485 (5)ref|XP_009774266.1|4e-110PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF002B22+ TTTCCTAATACAACTGAAAGTTAC
rJMSF008H19+ CAACTGAAAGTTAC
                      ____________________________________________________________
consensus TTTCCTAATACAACTGAAAGTTAC
 
. : . : . : . : . : . :
rJMFF002B22+ AAACTTTACTGCCAGAAAGTGATTGCCAGTGACATCAAAGAATGTGTGAGCCGAGCT-CC
rJMSF008H19+ AAACTTTACTGCCAGAAAGTGANTGCCAGTGACATCCAAGAATGTGTGAGCCGAGCT-CC
rJMSF020K17+ CC
rJMSF024D13+ AGAAAGTGATTGCCAGTGACATCNAAGAATGTGTGAGCCGAGCT-CC
rJMFF039I15+ AGAAAGTGATTGCCAGTGACATCAAAGAATGTGTGAGCCGAGCTCCC
                      ____________________________________________________________
consensus AAACTTTACTGCCAGAAAGTGATTGCCAGTGACATCAAAGAATGTGTGAGCCGAGCT-CC
 
. : . : . : . : . : . :
rJMFF002B22+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
rJMSF008H19+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
rJMSF020K17+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
rJMSF024D13+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
rJMFF039I15+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
                      ____________________________________________________________
consensus AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
 
. : . : . : . : . : . :
rJMFF002B22+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
rJMSF008H19+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
rJMSF020K17+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
rJMSF024D13+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
rJMFF039I15+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGATCCCCTGACATCTTATTCA
                      ____________________________________________________________
consensus TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
 
. : . : . : . : . : . :
rJMFF002B22+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
rJMSF008H19+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
rJMSF020K17+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
rJMSF024D13+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
rJMFF039I15+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
                      ____________________________________________________________
consensus ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
 
. : . : . : . : . : . :
rJMFF002B22+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
rJMSF008H19+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
rJMSF020K17+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
rJMSF024D13+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
rJMFF039I15+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
                      ____________________________________________________________
consensus TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
 
. : . : . : . : . : . :
rJMFF002B22+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
rJMSF008H19+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
rJMSF020K17+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATTCAACAACTAAAAG
rJMSF024D13+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
rJMFF039I15+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
                      ____________________________________________________________
consensus GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
 
. : . : . : . : . : . :
rJMFF002B22+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
rJMSF008H19+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
rJMSF020K17+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
rJMSF024D13+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
rJMFF039I15+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
                      ____________________________________________________________
consensus AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
 
. : . : . : . : . : . :
rJMFF002B22+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
rJMSF008H19+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
rJMSF020K17+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
rJMSF024D13+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
rJMFF039I15+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
                      ____________________________________________________________
consensus CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
 
. : . : . : . : . : . :
rJMFF002B22+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
rJMSF008H19+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
rJMSF020K17+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
rJMSF024D13+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
rJMFF039I15+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
                      ____________________________________________________________
consensus CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
 
. : . : . : . : . : . :
rJMFF002B22+ CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
rJMSF008H19+ CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
rJMSF020K17+ CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
rJMSF024D13+ CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
rJMFF039I15+ CATATGTTCGAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
                      ____________________________________________________________
consensus CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
 
. : . : . : . : . : . :
rJMFF002B22+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
rJMSF008H19+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
rJMSF020K17+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
rJMSF024D13+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
rJMFF039I15+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTATATTTAGTTGAGATTAA
                      ____________________________________________________________
consensus TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
 
. : . : . : . : . : . :
rJMFF002B22+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAAC
rJMSF008H19+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
rJMSF020K17+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
rJMSF024D13+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
rJMFF039I15+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
                      ____________________________________________________________
consensus TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
 
. : . : . : . : . : . :
rJMSF008H19+ CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
rJMSF020K17+ CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
rJMSF024D13+ CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
rJMFF039I15+ CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
                      ____________________________________________________________
consensus CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
 
. : . : . : . : . : . :
rJMSF020K17+ TGTAGCCAACTTGAATTCTTCATGGCTCCTTATCCAGTACT
rJMSF024D13+ TGTAGCCAACTTGAATTCTTCATGGCTCCTTATCCAGTACT
rJMFF039I15+ TGTAGCCAACTTGAATTCTTCATGGCTCCTTATCCAGTACTGAAAATTGGCATTCTTTAT
                      ____________________________________________________________
consensus TGTAGCCAACTTGAATTCTTCATGGCTCCTTATCCAGTACTGAAAATTGGCATTCTTTAT