clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF002B22 | Sequence | 317 | 007774 (5) | ref|XP_011097013.1| | 3e-36 | PREDICTED: actin-related protein 4 isoform X2 [Sesamum indicum] | 714 | 005485 (5) | ref|XP_009774266.1| | 2e-121 | PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris] |
JMFF039I15 | Sequence | 579 | 007774 (5) | ref|XP_009612119.1| | 6e-114 | PREDICTED: actin-related protein 4 isoform X2 [Nicotiana tomentosiformis] | 827 | 005485 (5) | ref|XP_009774266.1| | 9e-78 | PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris] |
JMSF008H19 | Sequence | 366 | 007774 (5) | emb|CDO98459.1| | 5e-42 | unnamed protein product [Coffea canephora] | 794 | 005485 (5) | ref|XP_009774266.1| | 1e-116 | PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris] |
JMSF020K17 | Sequence | 662 | 007774 (5) | ref|XP_009612118.1| | 2e-118 | PREDICTED: actin-related protein 4 isoform X1 [Nicotiana tomentosiformis] | 785 | 005485 (5) | ref|XP_009774266.1| | 5e-100 | PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris] |
JMSF024D13 | Sequence | 662 | 007774 (5) | ref|XP_009612118.1| | 2e-118 | PREDICTED: actin-related protein 4 isoform X1 [Nicotiana tomentosiformis] | 814 | 005485 (5) | ref|XP_009774266.1| | 4e-110 | PREDICTED: actin-related protein 4-like, partial [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF002B22+ TTTCCTAATACAACTGAAAGTTAC
rJMSF008H19+ CAACTGAAAGTTAC
____________________________________________________________
consensus TTTCCTAATACAACTGAAAGTTAC
. : . : . : . : . : . :
rJMFF002B22+ AAACTTTACTGCCAGAAAGTGATTGCCAGTGACATCAAAGAATGTGTGAGCCGAGCT-CC
rJMSF008H19+ AAACTTTACTGCCAGAAAGTGANTGCCAGTGACATCCAAGAATGTGTGAGCCGAGCT-CC
rJMSF020K17+ CC
rJMSF024D13+ AGAAAGTGATTGCCAGTGACATCNAAGAATGTGTGAGCCGAGCT-CC
rJMFF039I15+ AGAAAGTGATTGCCAGTGACATCAAAGAATGTGTGAGCCGAGCTCCC
____________________________________________________________
consensus AAACTTTACTGCCAGAAAGTGATTGCCAGTGACATCAAAGAATGTGTGAGCCGAGCT-CC
. : . : . : . : . : . :
rJMFF002B22+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
rJMSF008H19+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
rJMSF020K17+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
rJMSF024D13+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
rJMFF039I15+ AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
____________________________________________________________
consensus AGATACTCCATATGATGATAGTTCATACTCAAACATTCCAATGACGCCTTATGAGCTTCC
. : . : . : . : . : . :
rJMFF002B22+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
rJMSF008H19+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
rJMSF020K17+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
rJMSF024D13+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
rJMFF039I15+ TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGATCCCCTGACATCTTATTCA
____________________________________________________________
consensus TGATGGGCAGACCATAGAAATTGGCGCAGACAGATTCAAGAT-CCCTGACATCTTATTCA
. : . : . : . : . : . :
rJMFF002B22+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
rJMSF008H19+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
rJMSF020K17+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
rJMSF024D13+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
rJMFF039I15+ ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
____________________________________________________________
consensus ATCCTTCTTTGGTTCAGACCATCCCTGGAATGGAAAGTTTTGCCGAGACTGCTACTTCTC
. : . : . : . : . : . :
rJMFF002B22+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
rJMSF008H19+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
rJMSF020K17+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
rJMSF024D13+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
rJMFF039I15+ TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
____________________________________________________________
consensus TCCGTGGTCTCCCACAAATGGTCATTGAGAGTATAAGTAGGTGTGATGTGGACATTCGAA
. : . : . : . : . : . :
rJMFF002B22+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
rJMSF008H19+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
rJMSF020K17+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATTCAACAACTAAAAG
rJMSF024D13+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
rJMFF039I15+ GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
____________________________________________________________
consensus GAGAACTCTATAGTAGTATATTGCTTTCTGGGGGAACAGCATCAATGCAACAACTAAAAG
. : . : . : . : . : . :
rJMFF002B22+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
rJMSF008H19+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
rJMSF020K17+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
rJMSF024D13+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
rJMFF039I15+ AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
____________________________________________________________
consensus AACGTCTTGAGAAAGATTTGCTTGAGGAATCTCCACAAGCAGCAAGAGTCAAAGTACTGG
. : . : . : . : . : . :
rJMFF002B22+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
rJMSF008H19+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
rJMSF020K17+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
rJMSF024D13+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
rJMFF039I15+ CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
____________________________________________________________
consensus CAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTATGGATAGGGGGCAGTATATTGGCAT
. : . : . : . : . : . :
rJMFF002B22+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
rJMSF008H19+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
rJMSF020K17+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
rJMSF024D13+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
rJMFF039I15+ CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
____________________________________________________________
consensus CACTTGGTTCTTTTCAGCAAATGTGGTTTTCAAAATCTGAGTATGAAGAACATGGGGCTT
. : . : . : . : . : . :
rJMFF002B22+ CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
rJMSF008H19+ CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
rJMSF020K17+ CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
rJMSF024D13+ CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
rJMFF039I15+ CATATGTTCGAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
____________________________________________________________
consensus CATATGTTCAAAGAAAATGTCCCTAATTTGCACTAGTGGCAGCATGGCCCTGTCTGCCAT
. : . : . : . : . : . :
rJMFF002B22+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
rJMSF008H19+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
rJMSF020K17+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
rJMSF024D13+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
rJMFF039I15+ TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTATATTTAGTTGAGATTAA
____________________________________________________________
consensus TTCTGTGATCGACCATTCACTTGTTTGATGAGACAACTGTGTAAATTTAGTTGAGATTAA
. : . : . : . : . : . :
rJMFF002B22+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAAC
rJMSF008H19+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
rJMSF020K17+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
rJMSF024D13+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
rJMFF039I15+ TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
____________________________________________________________
consensus TCCGAACAGTCTTGTATCTTGTTTCCGCTAACTGTGATTAATTTAGATAATGTTGTGACT
. : . : . : . : . : . :
rJMSF008H19+ CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
rJMSF020K17+ CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
rJMSF024D13+ CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
rJMFF039I15+ CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
____________________________________________________________
consensus CCAGTACATTATTTGCTGCTGCTGCTGAAATTGGTCTGCCATTTTAGTTAGGAGTAAATT
. : . : . : . : . : . :
rJMSF020K17+ TGTAGCCAACTTGAATTCTTCATGGCTCCTTATCCAGTACT
rJMSF024D13+ TGTAGCCAACTTGAATTCTTCATGGCTCCTTATCCAGTACT
rJMFF039I15+ TGTAGCCAACTTGAATTCTTCATGGCTCCTTATCCAGTACTGAAAATTGGCATTCTTTAT
____________________________________________________________
consensus TGTAGCCAACTTGAATTCTTCATGGCTCCTTATCCAGTACTGAAAATTGGCATTCTTTAT