| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039G15 | Sequence | 599 | 009359 (3) | ref|XP_009758833.1| | 1e-56 | PREDICTED: F-box protein At4g00755-like isoform X3 [Nicotiana sylvestris] | 710 | 005484 (3) | ref|XP_009601681.1| | 2e-51 | PREDICTED: F-box protein At4g00755-like isoform X2 [Nicotiana tomentosiformis] |
| JMSF011C17 | Sequence | 300 | 009359 (3) | 696 | 005484 (3) | ref|XP_009758501.1| | 2e-41 | PREDICTED: F-box protein At4g00755-like isoform X2 [Nicotiana sylvestris] | |||
| JMSF026I18 | Sequence | 672 | 009359 (3) | ref|XP_009758835.1| | 2e-55 | PREDICTED: F-box protein At4g00755-like isoform X5 [Nicotiana sylvestris] | 708 | 005484 (3) | ref|XP_009758501.1| | 4e-71 | PREDICTED: F-box protein At4g00755-like isoform X2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF026I18+ AACCGGGCAAACCCATAT
____________________________________________________________
consensus AACCGGGCAAACCCATAT
. : . : . : . : . : . :
rJMSF026I18+ ACTCGGCAAAATCTGTACGATTTCGAATGGGCCATCCCAAATCTTCAAAAGAAATAGACT
____________________________________________________________
consensus ACTCGGCAAAATCTGTACGATTTCGAATGGGCCATCCCAAATCTTCAAAAGAAATAGACT
. : . : . : . : . : . :
rJMSF026I18+ GTCTGGACGTACCCACGGACCAACCAGCTGATGATAAGTTTGTATGGACCTATACATCAG
____________________________________________________________
consensus GTCTGGACGTACCCACGGACCAACCAGCTGATGATAAGTTTGTATGGACCTATACATCAG
. : . : . : . : . : . :
rJMSF026I18+ AAGAATTCCCAATGTCCCAGGAGAACCGCATGCAGGCATTCCAGCTGCCGGAACCAGTTC
rJMSF011C17+ CAGGAGAACCGCATGCAGGCATTCCAGCTGCCGGAACCAGTTC
rJMFF039G15+ CAGGAGAACTGCATGCAGGCATTCAAGCTGCCGGAACCAGTTC
____________________________________________________________
consensus AAGAATTCCCAATGTCCCAGGAGAACCGCATGCAGGCATTCCAGCTGCCGGAACCAGTTC
. : . : . : . : . : . :
rJMSF026I18+ TTTGCATTGGTGGGTATCTGCAGATTGAGCTCCTAGGCAGAGTTCAGAGGCAAGAAATTG
rJMSF011C17+ TTTGCATTGGTGGGTATCTGCAGATTGAGCTCCTAGGCAGAGTTCAGAGGCAAGAAATTG
rJMFF039G15+ TTTGCATTGGTGGGTATCTGCAGATTGAGCTCCTCGGCAGAGTTCAGAGGAATGAATTTG
____________________________________________________________
consensus TTTGCATTGGTGGGTATCTGCAGATTGAGCTCCTAGGCAGAGTTCAGAGGCAAGAAATTG
. : . : . : . : . : . :
rJMSF026I18+ ATGACTTATTTTATATATGTGTGTGCCATGTTAAAGTTCTGGGCCGACCCCTCAGCCCCG
rJMSF011C17+ ATGACTTATTTTATATATGTGTGTGCCATGTTAAAGTTCTGGGCCGACCCCTCAGCCCCG
rJMFF039G15+ ATGGCTTATTTTATATATGTGTGTGCCATGTTAAAGTTCTGGGCCGACCCCTCAGCCCCG
____________________________________________________________
consensus ATGACTTATTTTATATATGTGTGTGCCATGTTAAAGTTCTGGGCCGACCCCTCAGCCCCG
. : . : . : . : . : . :
rJMSF026I18+ CATTTGAAATAGAGATGCTCGAACAATCTGGAAAATTCTCTATGGTCTACAGCCCGGAAG
rJMSF011C17+ CATTTGAAATAGAGATGCTCGAACAATCTGGAAAATTCTCTATGGTCTACAGCCCGGAAG
rJMFF039G15+ CATTTGAAATAAAGATCCTCAAACAATCTGGAAAATTCTCGATGGTTTACAACCCTGAAG
____________________________________________________________
consensus CATTTGAAATAGAGATGCTCGAACAATCTGGAAAATTCTCTATGGTCTACAGCCCGGAAG
. : . : . : . : . : . :
rJMSF026I18+ TGTTGAAGCCCATGTTGCAATCCTTGGGCGAGGGTGAAGATCACGAGGCCTCCTCGAGGC
rJMSF011C17+ TGTTGAAGCCCATGTTGCAATCCTTGGGCGAGGGTGAAGATCACGAGGCCTCCTCGAGGC
rJMFF039G15+ TGTTGAAGCCCATGTTGCAATCCTTGGGCGAGGGTGAAGATCACGAGGCCTCCTCGATGC
____________________________________________________________
consensus TGTTGAAGCCCATGTTGCAATCCTTGGGCGAGGGTGAAGATCACGAGGCCTCCTCGAGGC
. : . : . : . : . : . :
rJMSF026I18+ TGTCTGAGCAAGAGGTGAGACATATCGGTTTCTTGGGGTATTTGTTGGGTGGCAACCAAC
rJMSF011C17+ TGTCTGAGCAAGAGGTGAGACATATCGGTTTCTTGGGGTATTTGTTGGGTGGCAACCAAC
rJMFF039G15+ TGTCTGAGCAAGAGGTGAGACATATCGGTTTCTTGGGGTATTTGTTGGGCGGCAACCAAC
____________________________________________________________
consensus TGTCTGAGCAAGAGGTGAGACATATCGGTTTCTTGGGGTATTTGTTGGGTGGCAACCAAC
. : . : . : . : . : . :
rJMSF026I18+ CAGTCGGTGAACTCCTGGAGTGGGAGGACGACGAGGAGATGGATGCAGCTTTGGCGTTGT
rJMSF011C17+ CAGTCGGTGAACTCCTGGAGTGGGAGGACGACGAGGAGATGGATGCAGCTTTGGCGTTGT
rJMFF039G15+ CAGTCGGTGAACTCTTGGAGTGGGACGACGAGGATGTGATGGATGCAGCTTTGGCATTGT
____________________________________________________________
consensus CAGTCGGTGAACTCCTGGAGTGGGAGGACGACGAGGAGATGGATGCAGCTTTGGCGTTGT
. : . : . : . : . : . :
rJMSF026I18+ GATTTATAATATGTGATTTTATATTTTTCGTGCCTTCTGCATTTGTTTTCTTTGTGCTAG
rJMSF011C17+ GATTTATAATATGTGATTTTATATTTTTCGTGCCTTCTGCATTTGTTTTCTTTGTGCTAG
rJMFF039G15+ GATTTACAATAAGCCA-TTTATATTTTTCATACCTTCTGCATTTGTGTTCTTTGTGCTAG
____________________________________________________________
consensus GATTTATAATATGTGATTTTATATTTTTCGTGCCTTCTGCATTTGTTTTCTTTGTGCTAG
. : . : . : . : . : . :
rJMSF026I18+ CAACCACATGGAAGGCT
rJMSF011C17+ CAACCACATGGAAGGCT
rJMFF039G15+ CAACCACATGGAAGGCTCGAAGCCTATGTGCACTCAAATCTGTTTGGTAAATGGCTAAAT
____________________________________________________________
consensus CAACCACATGGAAGGCTCGAAGCCTATGTGCACTCAAATCTGTTTGGTAAATGGCTAAAT
. : . : . : . : . : . :
rJMFF039G15+ GGCTGTTAGCTGATAGTTGTTAGCTGATTGTGTTAATTAGAGAGGATAACTAGTTAATAA
____________________________________________________________
consensus GGCTGTTAGCTGATAGTTGTTAGCTGATTGTGTTAATTAGAGAGGATAACTAGTTAATAA
. : . : . : . : . : . :
rJMFF039G15+ CATTAGTTGATTGTAGAAAAATGTTTGGTAAATTAGCTGTTGTTTGTATAATTTCTTTTT
____________________________________________________________
consensus CATTAGTTGATTGTAGAAAAATGTTTGGTAAATTAGCTGTTGTTTGTATAATTTCTTTTT