Contig 005482:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF039K22+                                                          TTCTGCAAAAAC
                      ____________________________________________________________
consensus                                                             TTCTGCAAAAAC
 
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rJMSF039K22+          TGAAGTATTTGACTGCGACCGGGAAACTTATGAAGATGTCACGGAAATATAGGATAGTTC
                      ____________________________________________________________
consensus             TGAAGTATTTGACTGCGACCGGGAAACTTATGAAGATGTCACGGAAATATAGGATAGTTC
 
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rJMSF039K22+          CATCTTCATTGTTGTCTAACAATACAAGAAACCCTCCCATTCCAATCTTAGAGGGCAGGG
                      ____________________________________________________________
consensus             CATCTTCATTGTTGTCTAACAATACAAGAAACCCTCCCATTCCAATCTTAGAGGGCAGGG
 
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rJMSF039K22+          AGAGAATCTTGCCTAAGGTTGATCGGTATGATATTGATATGCTCACTAAATCTCAGATTG
rJMFF038N11+                                     ATGATATTGATATGCTCACTAAATCTCAGATTG
                      ____________________________________________________________
consensus             AGAGAATCTTGCCTAAGGTTGATCGGTATGATATTGATATGCTCACTAAATCTCAGATTG
 
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rJMSF039K22+          ATTTGGAGTTAGCCAAGATGAGGAGTATGACGCCTCAGGAGGCAGCAGCTACTGCTGCTC
rJMFF038N11+          ATTTGGAGTTAGCCAAGATGAGGAGTATGACGCCTCAGGAGGCAGCAGCTACTGCTGCTC
                      ____________________________________________________________
consensus             ATTTGGAGTTAGCCAAGATGAGGAGTATGACGCCTCAGGAGGCAGCAGCTACTGCTGCTC
 
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rJMSF039K22+          AAGCTGTTGCCGAAGCTGAAGCCGCTATAGCAGAAGCTGAACAGGCAGCAAGGGAGGCAG
rJMFF038N11+          AAGCTGTTGCCGAAGCTGAAGCCGCTATAGCAGAAGCTGAACAGGCAGCAAGGGAGGCAG
                      ____________________________________________________________
consensus             AAGCTGTTGCCGAAGCTGAAGCCGCTATAGCAGAAGCTGAACAGGCAGCAAGGGAGGCAG
 
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rJMSF039K22+          AGGCAGCAGAAGCTGATGCAGAAGCTGCACTAGCCTTTGCAGAAGCAGCAATGAAGACAG
rJMFF038N11+          AGGCAGCAGAAGCTGATGCAGAAGCTGCACTAGCCTTTGCAGAAGCAGCAATGAAGACAG
                      ____________________________________________________________
consensus             AGGCAGCAGAAGCTGATGCAGAAGCTGCACTAGCCTTTGCAGAAGCAGCAATGAAGACAG
 
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rJMSF039K22+          TACATGGGAGAAGCACCCCTAGGATGATGATTCAGGCTTGATGGATTTCGCCAAAGGAGA
rJMFF038N11+          TACATGGGAGAAGCACCCCTAGGATGATGATTCAGGCTTGATGGATTTCGCCAAAGGAGA
                      ____________________________________________________________
consensus             TACATGGGAGAAGCACCCCTAGGATGATGATTCAGGCTTGATGGATTTCGCCAAAGGAGA
 
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rJMSF039K22+          ATCCCGATCTCGTAGACCTTAATCCAGATCAAAGGGCAGATGAGTTTCCAGACATCTCAC
rJMFF038N11+          ATCCCGATCTCGTAGACCTTAATCCAGATCAAAGGGCAGATGAGTTTCCAGACATCTCAC
                      ____________________________________________________________
consensus             ATCCCGATCTCGTAGACCTTAATCCAGATCAAAGGGCAGATGAGTTTCCAGACATCTCAC
 
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rJMSF039K22+          TCTTACTCCACTCTTGTAAATATGGCGGATTTTCCGGTGACTAGAATCAGGTGGTCAATT
rJMFF038N11+          TCTTACTCCACTCTTGTAAATATGGCGGATTTTCCGGTGACTAGAATCAGGTGGTCAATT
                      ____________________________________________________________
consensus             TCTTACTCCACTCTTGTAAATATGGCGGATTTTCCGGTGACTAGAATCAGGTGGTCAATT
 
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rJMSF039K22+          TGTAACCTTGAATGCATCTTCTGGCTGCTGACAAGCTTGGATATGTTGTGTTTTCCTTTT
rJMFF038N11+          TGTAACCTTGAATGCATCTTCTGGCTGCTGACAAGCTTGGATATGTTGTGTTTTCCTTTT
                      ____________________________________________________________
consensus             TGTAACCTTGAATGCATCTTCTGGCTGCTGACAAGCTTGGATATGTTGTGTTTTCCTTTT
 
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rJMSF039K22+          GTTTTTTGGATGTTTCTGTTTAGGTGTTGACAGATAGATAAGCCGGTAATCTGTAAGGGA
rJMFF038N11+          GTTTTTTGGATGTTTCTGTTTAGGTGTTGACAGATAGATAAGCCGGTAATCTGTAAGGGA
                      ____________________________________________________________
consensus             GTTTTTTGGATGTTTCTGTTTAGGTGTTGACAGATAGATAAGCCGGTAATCTGTAAGGGA
 
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rJMSF039K22+          AAATCTTGGTGGATATAAACCAGGAACACTTGTTCAGGTAAAATGGGAAAGGGGAAGTTT
rJMFF038N11+          AAATCTTGGTGGATATAAACCAGGAACACTTGTTCAGGTAAAATGGGAAAGGGGAAGTTT
                      ____________________________________________________________
consensus             AAATCTTGGTGGATATAAACCAGGAACACTTGTTCAGGTAAAATGGGAAAGGGGAAGTTT
 
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rJMSF039K22+          CAGTCTTCTGGTAGTATGGGAACCTTCTTCATAGAAATCCAGGCATTCATTGTGCTTAGT
rJMFF038N11+          CAGTCTTCTGGTAGTATGGGAACCTTCTTCATAGAAATCCAGGCATTCATTGTGCTTAGT
                      ____________________________________________________________
consensus             CAGTCTTCTGGTAGTATGGGAACCTTCTTCATAGAAATCCAGGCATTCATTGTGCTTAGT
 
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rJMSF039K22+          CGTAGAAAATGCTTCCTCAATCTTCACTTAACAGGAAAAATGTTTTTAGTTTTCATTTCC
rJMFF038N11+          CGTAGAAAATGCTTCCTCAATCTTCACTTAACAGGAAAAATGTTTTTAGTTTTCATTTCC
                      ____________________________________________________________
consensus             CGTAGAAAATGCTTCCTCAATCTTCACTTAACAGGAAAAATGTTTTTAGTTTTCATTTCC
 
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rJMSF039K22+          TTGGCT                                                      
rJMFF038N11+          TTGGCTTCCTTTTGTTGTTGAAATTTTCGATTTCTCATTGGAAATTGTTGTGTATAAAAC
                      ____________________________________________________________
consensus             TTGGCTTCCTTTTGTTGTTGAAATTTTCGATTTCTCATTGGAAATTGTTGTGTATAAAAC