Contig 005479:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN036J06-                                            GAGAGAACTAGTCTCGAGXXXXXXXXX
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consensus                                              GAGAGAACTAGTCTCGAGNNNNNNNNN
 
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JMFN018D22+                    AAATAAAAATTTATTGTATAATAAAATATAACATATTATATACCAGTAAAA
JMFN014B03+                    AAATAAAAATTTATTGTATAATAAAATATAACATATTATATACCAGTAAAA
JMFN007C09+                    AAATAAAAATTTATTGTATAATAAAATATAACATATTATATACCAGTAAAA
JMFN009B03+                                ATTGTATAATAAAATATAACATATTATATACCAGTAAAA
JMFN018I02+                    AAATAAAAATTTATTGTATAATAAAATATAACATATTATATACCAGTAAAA
JMFN025I21+                    AAATAAAAATTTATTGTATAATAAAATATAACATATTATATACCAGTAAAA
JMFN036J06-           XXXXXXXXXAAATAAAAATTTATTGTATAATAAAATATAACATATTATATACCAGTAAAA
JMFN040K22+                    AAATAAAAATTTATTGTATAATAAAATATAACATATTATATACCAGTAAAA
JMFN007M09+                                   GTATAATAAAATATAACATATTATATACCAGTAAAA
rJMFF037N08-                                 TGTATAATAAAATATAACATATTATATACCAGTAAAA
                      ____________________________________________________________
consensus             NNNNNNNNNAAATAAAAATTTATTGTATAATAAAATATAACATATTATATACCAGTAAAA
 
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JMFN018D22+           GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
JMFN014B03+           GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
JMFN007C09+           GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
JMFN009B03+           GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
JMFN018I02+           GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
JMFN025I21+           GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
JMFN036J06-           GAATGTCTCAAGAACATGCGGTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
JMFN040K22+           GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
JMFN007M09+           GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
rJMFF037N08-          GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
                      ____________________________________________________________
consensus             GAATGTCTCAAGAACAT-CACTGTAGAACAAGCACTCGCATAACAATCCTACTGATAAAT
 
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JMFN018D22+           CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
JMFN014B03+           CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
JMFN007C09+           CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
JMFN009B03+           CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
JMFN018I02+           CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
JMFN025I21+           CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
JMFN036J06-           CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
JMFN040K22+           CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
JMFN007M09+           CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
rJMFF037N08-          CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
                      ____________________________________________________________
consensus             CGCACTAATAGAATCATAATCTCTGTAACTACGTATCACTCAAAATGAGATAGAATACAG
 
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JMFN018D22+           ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
JMFN014B03+           ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
JMFN007C09+           ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
JMFN009B03+           ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
JMFN018I02+           ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
JMFN025I21+           ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
JMFN036J06-           ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
JMFN040K22+           ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
JMFN007M09+           ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
rJMFF037N08-          ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
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consensus             ATAACAAATCAACGAACGCAAAACTCAAAACTCAGTGCCTGAGGAGAGCAGCTACGGACA
 
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JMFN018D22+           GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
JMFN014B03+           GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
JMFN007C09+           GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
JMFN009B03+           GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
JMFN018I02+           GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
JMFN025I21+           GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
JMFN036J06-           GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
JMFN040K22+           GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
JMFN007M09+           GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
rJMFF037N08-          GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
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consensus             GCAGGAGAGAGCTTCCGATCACGGCGGAAGAGATCGGGAGAGAGAATGCGGCTCCGGCAT
 
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JMFN018D22+           CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
JMFN014B03+           CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
JMFN007C09+           CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
JMFN009B03+           CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
JMFN018I02+           CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTG                          
JMFN025I21+           CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
JMFN036J06-           CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
JMFN040K22+           CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
JMFN007M09+           CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
rJMFF037N08-          CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
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consensus             CAGGCGAAGGAGCTGGAGCAGATCCGATCTCCTGAGCCGTAGCAGCGGCGGAGAAGACGG
 
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JMFN018D22+           CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
JMFN014B03+           CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
JMFN007C09+           CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
JMFN009B03+           CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
JMFN025I21+           CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
JMFN036J06-           CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
JMFN040K22+           CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
JMFN007M09+           CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
rJMFF037N08-          CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
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consensus             CGAGGACGACGGCAAAGAGGAATGCCTTCACGATGCTAACTTGCGCCATTTTCGCAACAA
 
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JMFN018D22+           CGATGAG-TTTTTTGTGAAATTTGGAGAGTGAGAATTGT                     
JMFN014B03+           CGATGAG-TTTTTTGTGAAATTTGGAGAGTGAGAATTGT                     
JMFN007C09+           CGATGAG-TTTTTTGTGAAATTTGGAGAGT                              
JMFN009B03+           CGATGAGTTTTTTTGTGAAATTTGGAGAGTGAGAATTG                      
JMFN025I21+           CGATGAG-TTTTTTGTGAAATTTGGAGAGTGAGAATTGT                     
JMFN036J06-           CGATGAG-TTTTTTGTGAAATTTGGAGAGTGAGAATTGTG                    
JMFN040K22+           CGATGAG-TTTTTTGTGAAATTTGGAGAGTGAGAATTGTG                    
JMFN007M09+           CGATGAG-TTTTTTGTGAAATTTGGAGAGTGAGAATTGTG                    
rJMFF037N08-          CGATGAG-TTTTTTGTGAAATTTGGAGAGTGAGAATTGTGATGCGTATTAGGGTTGCAGT
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consensus             CGATGAG-TTTTTTGTGAAATTTGGAGAGTGAGAATTGTGATGCGTATTAGGGTTGCAGT