Contig 005478:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037M07Sequence776005478 (4)ref|XP_009630937.1|1e-114PREDICTED: cation transport regulator-like protein 2 [Nicotiana tomentosiformis
JMFN008O24Sequence626005478 (4)ref|XP_009630937.1|2e-116PREDICTED: cation transport regulator-like protein 2 [Nicotiana tomentosiformis
JMSF021J16Sequence677005478 (4)ref|XP_009630937.1|4e-116PREDICTED: cation transport regulator-like protein 2 [Nicotiana tomentosiformis760005478 (4)ref|XP_009630937.1|3e-115PREDICTED: cation transport regulator-like protein 2 [Nicotiana tomentosiformis

Alignment

This contig is upended


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JMSF021J16-                              GAGTCTCCCTCTCTAGTCTCCTCACCTCTCTCAAGTCTCAA
                      ____________________________________________________________
consensus                                GAGTCTCCCTCTCTAGTCTCCTCACCTCTCTCAAGTCTCAA
 
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JMSF021J16-           ATTGGGTTAGCGATCAGTCTCGGGGAGCGCCAGGACCCAGGAGGGATTTGGTGATGGTGA
JMFN008O24-                                 GGGAGCGCCAGGACCCAGGAGGGATTTGGTGATGGTGA
rJMSF021J16+                                GGGAGCGCCAGGACCCAGGAGGGATTTGGTGATGGTGA
rJMFF037M07+                                GGGAGCGCCAGGACCCAGGAGGGATTTGGTGATGGTGA
                      ____________________________________________________________
consensus             ATTGGGTTAGCGATCAGTCTCGGGGAGCGCCAGGACCCAGGAGGGATTTGGTGATGGTGA
 
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JMSF021J16-           TGTGGGTGTTCGGATACGGGTCGCTAATATGGAAACCGGGTTTCCATTACGACGATTGCC
JMFN008O24-           TGTGGGTGTTCGGATACGGGTCGCTAATATGGAAACCGGGTTTCCATTACGACGATTGCC
rJMSF021J16+          TGTGGGTGTTCGGATACGGGTCGCTAATATGGAAACCGGGTTTCCATTACGACGATTGCC
rJMFF037M07+          TGTGGGTGTTCGGATACGGGTCGCTAATATGGAAACCGGGTTTCCATTACGACGATTGCN
                      ____________________________________________________________
consensus             TGTGGGTGTTCGGATACGGGTCGCTAATATGGAAACCGGGTTTCCATTACGACGATTGCC
 
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JMSF021J16-           TCGTGGGTTTCATAAAGGGCTATCGCCGCGTCTTCTACCAAGGCAGTACCGATCACAGAG
JMFN008O24-           TCGTGGGTTTCATAAAGGGCTATCGCCGCGTCTTCTACCAAGGCAGTACCGATCACAGAG
rJMSF021J16+          TCGTGGGTTTCATAAAGGGCTATCGCCGCGTCTTCTACCAAGGCAGTACCGATCACAGAG
rJMFF037M07+          TCGTGGGTTTCATAAAGGGCTATCGCCGCGTCTTCTACCAAGGCAGTACCGATCACAGAG
                      ____________________________________________________________
consensus             TCGTGGGTTTCATAAAGGGCTATCGCCGCGTCTTCTACCAAGGCAGTACCGATCACAGAG
 
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JMSF021J16-           GAACTCCTGAATTCCCGGGTCGAACGGTCACATTGGAGCCTGCAGATGGGGAGGTTTGCT
JMFN008O24-           GAACTCCTGAATTCCCGGGTCGAACGGTCACATTGGAGCCTGCAGATGGGGAGGTTTGCT
rJMSF021J16+          GAACTCCTGAATTCCCGGGTCGAACGGTCACATTGGAGCCTGCAGATGGGGAGGTTTGCT
rJMFF037M07+          GAACTCCTGAATTCCCGGGTCGAACGGTCACATTGGAGCCTGCAGATGGGGAGGTTTGCT
                      ____________________________________________________________
consensus             GAACTCCTGAATTCCCGGGTCGAACGGTCACATTGGAGCCTGCAGATGGGGAGGTTTGCT
 
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JMSF021J16-           GGGGTATTGCCTACAAGATAACTAAAAAGGAAGATCAAGAAGTAGCGATAACGTATCTTG
JMFN008O24-           GGGGTATTGCCTACAAGATAACTAAAAAGGAAGATCAAGAAGTAGCGATAACGTATCTTG
rJMSF021J16+          GGGGTATTGCCTACAAGATAACTAAAAAGGAAGATCAAGAAGTAGCGATAACGTATCTTG
rJMFF037M07+          GGGGTATTGCCTACAAGATAACTAAAAAGGAAGATCAAGAAGTAGCGATAACGTATCTTG
                      ____________________________________________________________
consensus             GGGGTATTGCCTACAAGATAACTAAAAAGGAAGATCAAGAAGTAGCGATAACGTATCTTG
 
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JMSF021J16-           AAGTGAGGGAAAAGCAGTATGACAAGAAGGCCTATTTGGATCTTTTCACTGATTTAAAAG
JMFN008O24-           AAGTGAGGGAAAAGCAGTATGACAAGAAGGCCTATTTGGATCTTTTCACTGATTTAAAAG
rJMSF021J16+          AAGTGAGGGAAAAGCAGTATGACAAGAAGGCCTATTTGGATCTTTTCACTGATTTAAAAG
rJMFF037M07+          AAGTGAGGGAAAAGCAGTATGACAAGAAGGCCTATTTGGATCTTTTCACTGATTTAAAAG
                      ____________________________________________________________
consensus             AAGTGAGGGAAAAGCAGTATGACAAGAAGGCCTATTTGGATCTTTTCACTGATTTAAAAG
 
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JMSF021J16-           CTTCAACTCCAGCCGTTTCTGATGTACTGGTATATGTAGCATCTCCGGACAAGACAATCA
JMFN008O24-           CTTCAACTCCAGCCGTTTCTGATGTACTGGTATATGTAGCATCTCCGGACAAGACAATCA
rJMSF021J16+          CTTCAACTCCAGCCGTTTCTGATGTACTGGTATATGTAGCATCTCCGGACAAGACAATCA
rJMFF037M07+          CTTCAACTCCAGCCGTTTCTGATGTACTGGTATATGTAGCATCTCCGGACAAGACAATCA
                      ____________________________________________________________
consensus             CTTCAACTCCAGCCGTTTCTGATGTACTGGTATATGTAGCATCTCCGGACAAGACAATCA
 
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JMSF021J16-           ACAAAAATTACTTGGGGCCTGCATCAATTGAAGAAATTGCCAGTCAAATCGTTCGTGCTG
JMFN008O24-           ACAAAAATTACTTGGGGCCTGCATCAATTGAAGAAATTGCCAGTCAAATCGTTCGTGCTG
rJMSF021J16+          ACAAAAATTACTTGGGGCCTGCATCAATTGAAGAAATTGCCAGTCAAATCGTTCGTGCTG
rJMFF037M07+          ACAAAAATTACTTGGGGCCTGCATCAATTGAAGAAATTGCCAGTCAAATCGTTCGTGCTG
                      ____________________________________________________________
consensus             ACAAAAATTACTTGGGGCCTGCATCAATTGAAGAAATTGCCAGTCAAATCGTTCGTGCTG
 
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JMSF021J16-           AAGGGCCTTCTGGACCGAACAGAGATTACCTTTTTCAACTTGAGAAAGCGCTCGGTCTGA
JMFN008O24-           AAGGGCCTTCTGGACCGAACAGAGATTACCTTTTTCAACTTGAGAAAGCGCTCGGTCTGA
rJMSF021J16+          AAGGGCCTTCTGGACCGAACAGAGATTACCTTTTTCAACTTGAGAAAGCGCTCGGTCTGA
rJMFF037M07+          AAGGGCCTTCTGGACCGAACAGAGATTACCTTTTTCAACTTGAGAAAGCGCTCGGTCTGA
                      ____________________________________________________________
consensus             AAGGGCCTTCTGGACCGAACAGAGATTACCTTTTTCAACTTGAGAAAGCGCTCGGTCTGA
 
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JMSF021J16-           TAGGGTGTGAAGACAAACACGTTACTGACCTCGCTAAGGAGGTGCGACGCATCATTGGGG
JMFN008O24-           TAGGGTGTGAAGACAAACACGTTACTGACCTCGCTAAGGAGGTGCGACGCATCATTGGGG
rJMSF021J16+          TAGGGTGTGAAGACAAACACGTTACTGACCTCGCTAAGGAGGTGCGACGCATCATTGGGG
rJMFF037M07+          TAGGGTGTGAAGACAAACACGTTACTGACCTCGCTAAGGAGGTGCGACGCATCATTGGGG
                      ____________________________________________________________
consensus             TAGGGTGTGAAGACAAACACGTTACTGACCTCGCTAAGGAGGTGCGACGCATCATTGGGG
 
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JMSF021J16-           AGACAATTCCNATCTGAGTGGCTAGTGGCCCGGCCA                        
JMFN008O24-           AGACAATTCCAATCTGAGTGGCTAGTGGCCCGGCCA                        
rJMSF021J16+          AGACAATTCCAATCTGAGTGGCTAGTGGCCCGGCCAGGAAAGACTTTCTTGAGCCTTATA
rJMFF037M07+          AGACAATTCCAATCTGAGTGGCTAGTGGCCCGGCCAGGAAAGACTTTCTTGAGCCTTATA
                      ____________________________________________________________
consensus             AGACAATTCCAATCTGAGTGGCTAGTGGCCCGGCCAGGAAAGACTTTCTTGAGCCTTATA
 
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rJMSF021J16+          GTTATGGATATGGAAAAGACCAAAACTAAAACATAATTACTTGTGCCTAATATTCTCAGC
rJMFF037M07+          GTTATGGATATGGAAAAGACCAAAACTAAAACATAATTACTTGTGCCTAATATTCTCAGC
                      ____________________________________________________________
consensus             GTTATGGATATGGAAAAGACCAAAACTAAAACATAATTACTTGTGCCTAATATTCTCAGC
 
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rJMSF021J16+          ATGTGTAATTACTTCTCAATTTATTTCTTGACGCCAACAC                    
rJMFF037M07+          ATGTGTAATTACTTCTCAATTTATTTCTTGACGCCAACACTTCATAAATAATTAAAGACA
                      ____________________________________________________________
consensus             ATGTGTAATTACTTCTCAATTTATTTCTTGACGCCAACACTTCATAAATAATTAAAGACA