Contig 005477:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014G14Sequence498006637 (8)emb|CDO99530.1|2e-45unnamed protein product [Coffea canephora]760005477 (6)ref|XP_009758822.1|4e-120PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMFF015I20Sequence584006637 (8)emb|CDO99530.1|5e-43unnamed protein product [Coffea canephora]734005477 (6)ref|XP_009758822.1|3e-97PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMFF037L16Sequence521006637 (8)emb|CDO99530.1|4e-51unnamed protein product [Coffea canephora]701005477 (6)ref|XP_009758822.1|2e-93PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMFF038G04Sequence499006637 (8)emb|CDO99530.1|1e-50unnamed protein product [Coffea canephora]791005477 (6)ref|XP_009758822.1|2e-115PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMSF031F05Sequence671006637 (8)ref|XP_009758822.1|2e-75PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana791005477 (6)ref|XP_009758822.1|4e-129PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMSF038L12Sequence659006637 (8)ref|XP_009758822.1|3e-64PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana958005477 (6)ref|XP_009758822.1|9e-165PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038L12+ GATATCAATTCAGCTTATTNCATTGAGTGTGGAGGCAGCATATATAAACCAAAATTTC
                      ____________________________________________________________
consensus GATATCAATTCAGCTTATTNCATTGAGTGTGGAGGCAGCATATATAAACCAAAATTTC
 
. : . : . : . : . : . :
rJMSF038L12+ TCCCAACAATTGTTGGTAAGGGATGGGAATAAGCTCACATTTGAGGAGCCCAACCCATTT
                      ____________________________________________________________
consensus TCCCAACAATTGTTGGTAAGGGATGGGAATAAGCTCACATTTGAGGAGCCCAACCCATTT
 
. : . : . : . : . : . :
rJMSF031F05+ GGAAGNTGGAT
rJMSF038L12+ GCCACAGAGGGTGAGGAGGTAGCATCAGTAGCTTACAGGTATCGGAGGTGGAAGTTGGAT
                      ____________________________________________________________
consensus GCCACAGAGGGTGAGGAGGTAGCATCAGTAGCTTACAGGTATCGGAGGTGGAAGTTGGAT
 
. : . : . : . : . : . :
rJMSF031F05+ GATGATATGTATTTGGTGGCCCGGTGTGAGGTCCAGAGTGTGGTGGAAGTGAACAATCAG
rJMSF038L12+ GATGATATGTATTTGGTGGCCCGGTGTGAGGTCCAGAGTGTGGTGGAAGTGAACAATCAG
rJMFF014G14+ CAGAGTGTGGTGGAAGTGAACAATCAG
rJMFF038G04+ AGTGANCAATCAG
                      ____________________________________________________________
consensus GATGATATGTATTTGGTGGCCCGGTGTGAGGTCCAGAGTGTGGTGGAAGTGAACAATCAG
 
. : . : . : . : . : . :
rJMSF031F05+ AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
rJMSF038L12+ AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
rJMFF014G14+ AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
rJMFF038G04+ AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
                      ____________________________________________________________
consensus AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
 
. : . : . : . : . : . :
rJMSF031F05+ TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMSF038L12+ TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMFF014G14+ TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMFF038G04+ TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMFF015I20+ GGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMFF037L16+ CTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
                      ____________________________________________________________
consensus TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
 
. : . : . : . : . : . :
rJMSF031F05+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMSF038L12+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMFF014G14+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMFF038G04+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMFF015I20+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMFF037L16+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
                      ____________________________________________________________
consensus GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
 
. : . : . : . : . : . :
rJMSF031F05+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMSF038L12+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMFF014G14+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMFF038G04+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMFF015I20+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMFF037L16+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
                      ____________________________________________________________
consensus TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
 
. : . : . : . : . : . :
rJMSF031F05+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMSF038L12+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMFF014G14+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMFF038G04+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMFF015I20+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMFF037L16+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
                      ____________________________________________________________
consensus GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
 
. : . : . : . : . : . :
rJMSF031F05+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
rJMSF038L12+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
rJMFF014G14+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
rJMFF038G04+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGAAAGTATGTACTT
rJMFF015I20+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
rJMFF037L16+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
                      ____________________________________________________________
consensus GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
 
. : . : . : . : . : . :
rJMSF031F05+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
rJMSF038L12+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
rJMFF014G14+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
rJMFF038G04+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
rJMFF015I20+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATACACGAGGTTCCTCCAGATGCGTTTGAA
rJMFF037L16+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
                      ____________________________________________________________
consensus GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
 
. : . : . : . : . : . :
rJMSF031F05+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMSF038L12+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMFF014G14+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMFF038G04+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMFF015I20+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMFF037L16+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
                      ____________________________________________________________
consensus AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
 
. : . : . : . : . : . :
rJMSF031F05+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMSF038L12+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMFF014G14+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMFF038G04+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMFF015I20+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMFF037L16+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
                      ____________________________________________________________
consensus GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
 
. : . : . : . : . : . :
rJMSF031F05+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMSF038L12+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMFF014G14+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMFF038G04+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMFF015I20+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMFF037L16+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
                      ____________________________________________________________
consensus GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
 
. : . : . : . : . : . :
rJMSF031F05+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMSF038L12+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMFF014G14+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMFF038G04+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMFF015I20+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMFF037L16+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
                      ____________________________________________________________
consensus TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
 
. : . : . : . : . : . :
rJMSF031F05+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTT
rJMSF038L12+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTT
rJMFF014G14+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
rJMFF038G04+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
rJMFF015I20+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
rJMFF037L16+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
                      ____________________________________________________________
consensus TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
 
. : . : . : . : . : . :
rJMFF014G14+ TGCTTAGAGAAAT
rJMFF038G04+ TGCTTAGAGAAATGATAATGACTAGTTTGCTGAAATTTGAGCTCCTGCATGTCTACTC
rJMFF015I20+ TGCTTAGAGAAATGATAATGACTAGTTTGCTGAAATTTGAGCTCCTGCATGTCTACTC
rJMFF037L16+ TGCTTAGAGAAATGATAATGACTAGTTTGCTGAAATTTGAGCTCCTGCATGTCTACTCCT
                      ____________________________________________________________
consensus TGCTTAGAGAAATGATAATGACTAGTTTGCTGAAATTTGAGCTCCTGCATGTCTACTCCT