| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014G14 | Sequence | 498 | 006637 (8) | emb|CDO99530.1| | 2e-45 | unnamed protein product [Coffea canephora] | 760 | 005477 (6) | ref|XP_009758822.1| | 4e-120 | PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana |
| JMFF015I20 | Sequence | 584 | 006637 (8) | emb|CDO99530.1| | 5e-43 | unnamed protein product [Coffea canephora] | 734 | 005477 (6) | ref|XP_009758822.1| | 3e-97 | PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana |
| JMFF037L16 | Sequence | 521 | 006637 (8) | emb|CDO99530.1| | 4e-51 | unnamed protein product [Coffea canephora] | 701 | 005477 (6) | ref|XP_009758822.1| | 2e-93 | PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana |
| JMFF038G04 | Sequence | 499 | 006637 (8) | emb|CDO99530.1| | 1e-50 | unnamed protein product [Coffea canephora] | 791 | 005477 (6) | ref|XP_009758822.1| | 2e-115 | PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana |
| JMSF031F05 | Sequence | 671 | 006637 (8) | ref|XP_009758822.1| | 2e-75 | PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana | 791 | 005477 (6) | ref|XP_009758822.1| | 4e-129 | PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana |
| JMSF038L12 | Sequence | 659 | 006637 (8) | ref|XP_009758822.1| | 3e-64 | PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana | 958 | 005477 (6) | ref|XP_009758822.1| | 9e-165 | PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana |
This contig is upended
. : . : . : . : . : . :
rJMSF038L12+ GATATCAATTCAGCTTATTNCATTGAGTGTGGAGGCAGCATATATAAACCAAAATTTC
____________________________________________________________
consensus GATATCAATTCAGCTTATTNCATTGAGTGTGGAGGCAGCATATATAAACCAAAATTTC
. : . : . : . : . : . :
rJMSF038L12+ TCCCAACAATTGTTGGTAAGGGATGGGAATAAGCTCACATTTGAGGAGCCCAACCCATTT
____________________________________________________________
consensus TCCCAACAATTGTTGGTAAGGGATGGGAATAAGCTCACATTTGAGGAGCCCAACCCATTT
. : . : . : . : . : . :
rJMSF031F05+ GGAAGNTGGAT
rJMSF038L12+ GCCACAGAGGGTGAGGAGGTAGCATCAGTAGCTTACAGGTATCGGAGGTGGAAGTTGGAT
____________________________________________________________
consensus GCCACAGAGGGTGAGGAGGTAGCATCAGTAGCTTACAGGTATCGGAGGTGGAAGTTGGAT
. : . : . : . : . : . :
rJMSF031F05+ GATGATATGTATTTGGTGGCCCGGTGTGAGGTCCAGAGTGTGGTGGAAGTGAACAATCAG
rJMSF038L12+ GATGATATGTATTTGGTGGCCCGGTGTGAGGTCCAGAGTGTGGTGGAAGTGAACAATCAG
rJMFF014G14+ CAGAGTGTGGTGGAAGTGAACAATCAG
rJMFF038G04+ AGTGANCAATCAG
____________________________________________________________
consensus GATGATATGTATTTGGTGGCCCGGTGTGAGGTCCAGAGTGTGGTGGAAGTGAACAATCAG
. : . : . : . : . : . :
rJMSF031F05+ AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
rJMSF038L12+ AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
rJMFF014G14+ AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
rJMFF038G04+ AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
____________________________________________________________
consensus AGATCATTCTTGACTGTGAATGCCCTGAATGAGTTTGATTCTAAGTATTCCGGAGTTGAC
. : . : . : . : . : . :
rJMSF031F05+ TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMSF038L12+ TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMFF014G14+ TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMFF038G04+ TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMFF015I20+ GGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
rJMFF037L16+ CTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
____________________________________________________________
consensus TGGAGACAGAAGCTGGAGACTCAGAGGGGTGCGGTTTTAGCTACTGAGTTGAAGAACAAT
. : . : . : . : . : . :
rJMSF031F05+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMSF038L12+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMFF014G14+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMFF038G04+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMFF015I20+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
rJMFF037L16+ GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
____________________________________________________________
consensus GCTAATAAATTAGCGAAATGGACTGCACAGGCACTCTTGGCTAGTGCTGACATGATGAAA
. : . : . : . : . : . :
rJMSF031F05+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMSF038L12+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMFF014G14+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMFF038G04+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMFF015I20+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
rJMFF037L16+ TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
____________________________________________________________
consensus TTGGGATATGTTTCCCGTGTTCATCCCAGGGATCACTTTAACCATGTAATATTGGCTGTG
. : . : . : . : . : . :
rJMSF031F05+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMSF038L12+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMFF014G14+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMFF038G04+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMFF015I20+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
rJMFF037L16+ GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
____________________________________________________________
consensus GTGGGGTATAAGCCTAGAGACTTTGCAGCACAAATCAATTTGAATACGTCTAATATGTGG
. : . : . : . : . : . :
rJMSF031F05+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
rJMSF038L12+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
rJMFF014G14+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
rJMFF038G04+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGAAAGTATGTACTT
rJMFF015I20+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
rJMFF037L16+ GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
____________________________________________________________
consensus GGAATAATGAAGAGTATTGTCGACCTGTTTATGAAATTGAAGGATGGGAAGTATGTACTT
. : . : . : . : . : . :
rJMSF031F05+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
rJMSF038L12+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
rJMFF014G14+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
rJMFF038G04+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
rJMFF015I20+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATACACGAGGTTCCTCCAGATGCGTTTGAA
rJMFF037L16+ GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
____________________________________________________________
consensus GTTAAGGACCCATCCAAGCCCCAAGTGAGAATATACGAGGTTCCTCCAGATGCGTTTGAA
. : . : . : . : . : . :
rJMSF031F05+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMSF038L12+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMFF014G14+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMFF038G04+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMFF015I20+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
rJMFF037L16+ AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
____________________________________________________________
consensus AATGATTATGTTGAGGAACCTTTGCCGGAGGACGAACAGGTGCAGCCACCTGGTGAAGAT
. : . : . : . : . : . :
rJMSF031F05+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMSF038L12+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMFF014G14+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMFF038G04+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMFF015I20+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
rJMFF037L16+ GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
____________________________________________________________
consensus GCGGACACTGGTGAGGCAAATGGTGTTGCAAATGATGTAGAGGATAAGGAAGTCAGCACT
. : . : . : . : . : . :
rJMSF031F05+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMSF038L12+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMFF014G14+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMFF038G04+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMFF015I20+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
rJMFF037L16+ GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
____________________________________________________________
consensus GAAGCTGCTGCTGCTTAAGGGTAAGAGCATATTTCATCTTGCTATCCTGAAAGGTGGTCA
. : . : . : . : . : . :
rJMSF031F05+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMSF038L12+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMFF014G14+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMFF038G04+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMFF015I20+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
rJMFF037L16+ TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
____________________________________________________________
consensus TCTGGACTGTACTTCCACCATTTTGCACTAATTTATGATTGTTTTTTTAGTTGTTTTGGT
. : . : . : . : . : . :
rJMSF031F05+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTT
rJMSF038L12+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTT
rJMFF014G14+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
rJMFF038G04+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
rJMFF015I20+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
rJMFF037L16+ TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
____________________________________________________________
consensus TCAAGAGGATAGAAACTGTCATGTGTTAGGCTTTTTTACCTTTCACTATCTATTTCTTTT
. : . : . : . : . : . :
rJMFF014G14+ TGCTTAGAGAAAT
rJMFF038G04+ TGCTTAGAGAAATGATAATGACTAGTTTGCTGAAATTTGAGCTCCTGCATGTCTACTC
rJMFF015I20+ TGCTTAGAGAAATGATAATGACTAGTTTGCTGAAATTTGAGCTCCTGCATGTCTACTC
rJMFF037L16+ TGCTTAGAGAAATGATAATGACTAGTTTGCTGAAATTTGAGCTCCTGCATGTCTACTCCT
____________________________________________________________
consensus TGCTTAGAGAAATGATAATGACTAGTTTGCTGAAATTTGAGCTCCTGCATGTCTACTCCT