Contig 005475:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037I01Sequence716005475 (2)ref|XP_009768518.1|2e-45PREDICTED: F-box protein At1g30790-like [Nicotiana sylvestris]
JMSF008J14Sequence496015674ref|XP_009620908.1|1e-16PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis] ref|XP_00962751005475 (2)ref|XP_009768518.1|2e-53PREDICTED: F-box protein At1g30790-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF008J14+                TNGGATCAATCATTTTTCATACACCCGTTTCAGCTATTGGAGCAATGTATTGGC
                      ____________________________________________________________
consensus                   TNGGATCAATCATTTTTCATACACCCGTTTCAGCTATTGGAGCAATGTATTGGC
 
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rJMSF008J14+          TTCCTGAAAGATTCGGGTGCAATCATATTGTGTCACTGGGATATGATGATGAGAAATTCC
rJMFF037I01+              TGAAAGATTCGGGTGCAATCATATTGTGTCACTGGGATATGATGATGAGAAATTCC
                      ____________________________________________________________
consensus             TTCCTGAAAGATTCGGGTGCAATCATATTGTGTCACTGGGATATGATGATGAGAAATTCC
 
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rJMSF008J14+          TTTCTATTCCTCTGCCAATCAGCAGCACCAAGAATGATCGCTTGGTTGAGGTTGGAGGGT
rJMFF037I01+          TTTCTATTCCTCTGCCAATCAGCAGCACCAAGAATGATCGCTTGGTTGAGGTTGGAGGGT
                      ____________________________________________________________
consensus             TTTCTATTCCTCTGCCAATCAGCAGCACCAAGAATGATCGCTTGGTTGAGGTTGGAGGGT
 
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rJMSF008J14+          TATTGAGTTTTGTTACTCATGCAACCATGCACTTGATTCAGGTATGGATTTTGAGGAGGG
rJMFF037I01+          TATTGAGTTTTGTTACTCATGCAACCATGCACTTGATTCAGGTATGGATTTTGAGGAGGG
                      ____________________________________________________________
consensus             TATTGAGTTTTGTTACTCATGCAACCATGCACTTGATTCAGGTATGGATTTTGAGGAGGG
 
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rJMSF008J14+          ACGGTGTAGGTGACAATTGGATAAAGCGTTATAGTATAAACAGGAACTATGATATTACTG
rJMFF037I01+          ACGGTGTAGGTGACAATTGGATAAAGCGTTATAGTATAAACAGGAACTATGATATTACTG
                      ____________________________________________________________
consensus             ACGGTGTAGGTGACAATTGGATAAAGCGTTATAGTATAAACAGGAACTATGATATTACTG
 
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rJMSF008J14+          GATTGATCCCGTTTTGCACTTCGGGCTGTGAGATGGTGTTCAATAGACACAGGAAAAACT
rJMFF037I01+          GATTGATCCCGTTTTGCACTTCGGGCTGTGAGATGGTGTTCAATAGACACAGGAAAAACT
                      ____________________________________________________________
consensus             GATTGATCCCGTTTTGCACTTCGGGCTGTGAGATGGTGTTCAATAGACACAGGAAAAACT
 
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rJMSF008J14+          TGTTATATGTTTACAATCTGGAAAGTGATGAGATGAAGGAGGTCAATCTTGACACTGAAA
rJMFF037I01+          TGTTATATGTTTACAATCTGGAAAGTGATGAGATGAAGGAGGTCAATCTTGACACTGAAA
                      ____________________________________________________________
consensus             TGTTATATGTTTACAATCTGGAAAGTGATGAGATGAAGGAGGTCAATCTTGACACTGAAA
 
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rJMSF008J14+          CGATGAATTGGGAGGTCGAGCAAGATGATATGGAGTTTGAGGAAGAAGTAGATAACGGTG
rJMFF037I01+          CGATGAATTGGGAGGTCGAGCAAGATGATATGGAGTTTGAGGAAGAAGTAGATAACGGTG
                      ____________________________________________________________
consensus             CGATGAATTGGGAGGTCGAGCAAGATGATATGGAGTTTGAGGAAGAAGTAGATAACGGTG
 
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rJMSF008J14+          AAGACTTCACGTTCTATATTCCTCATGTGAACTCCATCGTCTCTGGCAGTACTCCTAATC
rJMFF037I01+          AAGACTTCACGTTCTATATTCCTCATGTGAACTCCATCGTCTCTGGCAGTACTCCTAATC
                      ____________________________________________________________
consensus             AAGACTTCACGTTCTATATTCCTCATGTGAACTCCATCGTCTCTGGCAGTACTCCTAATC
 
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rJMSF008J14+          GTCAATAGGAGAAAGTGATACATCCAGCTGTGTCTATCTGTCTGCACTTTATTACAAGTA
rJMFF037I01+          GTCAATAGGAGAAAGTGATACATCCAGCTGTGTCTATCTGTCTGCACTTTATTACAAGTA
                      ____________________________________________________________
consensus             GTCAATAGGAGAAAGTGATACATCCAGCTGTGTCTATCTGTCTGCACTTTATTACAAGTA
 
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rJMSF008J14+          TGCTGTTGTTATTTCTGAATCTTGTTACGCTGTAAATAATAATTTGCAACTAGTCTAGAA
rJMFF037I01+          TGCTGTTGTTATTTCTGAATCTTGTTACGCTGTAAATAATAATTTGCAACTAGTCTAGAA
                      ____________________________________________________________
consensus             TGCTGTTGTTATTTCTGAATCTTGTTACGCTGTAAATAATAATTTGCAACTAGTCTAGAA
 
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rJMSF008J14+          TGCTTAGAACCCTAGTTTAATTTTGCCGCTGTTATATTAGCTTTCAACTTATATTTCTCC
rJMFF037I01+          TGCTTAGAACCCTAGTTTAATTTTGCCGCTGTTATATTAGCTTTCAACTTATATTTCTCC
                      ____________________________________________________________
consensus             TGCTTAGAACCCTAGTTTAATTTTGCCGCTGTTATATTAGCTTTCAACTTATATTTCTCC
 
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rJMSF008J14+          AATTGAAAGATAGGCAGGGAGGCTCTGTATGGATATT                       
rJMFF037I01+          AATTGAAAGATAGGCAGGGAGGCTCTGTATGGATATTTATGGTACTGATGATCATAACTA
                      ____________________________________________________________
consensus             AATTGAAAGATAGGCAGGGAGGCTCTGTATGGATATTTATGGTACTGATGATCATAACTA