Contig 005472:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015H01Sequence598010272 (2)ref|XP_009773670.1|3e-58PREDICTED: high mobility group B protein 10-like [Nicotiana sylvestris]680005472 (2)ref|XP_011095645.1|5e-52PREDICTED: high mobility group B protein 10 [Sesamum indicum]
JMFF036I06Sequence571010272 (2)ref|XP_009773670.1|3e-55PREDICTED: high mobility group B protein 10-like [Nicotiana sylvestris]712005472 (2)ref|XP_011095645.1|2e-57PREDICTED: high mobility group B protein 10 [Sesamum indicum]

Alignment

This contig is upended


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rJMFF015H01+                                               TGATTATGGTTATGTAATATCTG
rJMFF036I06+                  TCAGTTGTTGGCACAATTGATGCGAAGTTTGATTATGGTTATGTAATATCTG
                      ____________________________________________________________
consensus                     TCAGTTGTTGGCACAATTGATGCGAAGTTTGATTATGGTTATGTAATATCTG
 
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rJMFF015H01+          TGAACATGGGTCCCGAGATTTTCAATGGCGCTCTTTATCATAAACCTATGCAACTAGATT
rJMFF036I06+          TGAACATGGGTCCCGAGATTTTCAATGGCGCTCTTTATCATAAACCTATGCAACTAGATT
                      ____________________________________________________________
consensus             TGAACATGGGTCCCGAGATTTTCAATGGCGCTCTTTATCATAAACCTATGCAACTAGATT
 
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rJMFF015H01+          CATCTCAGAGTGCTAGTGCTTCAACTGGACCTGCTAAACTGAATAGAAAGAAACACCAGC
rJMFF036I06+          CATCTCAGAGTGCTAGTGCTTCAACTGGACCTGCTAAACTGAATAGAAAGAAACACCAGC
                      ____________________________________________________________
consensus             CATCTCAGAGTGCTAGTGCTTCAACTGGACCTGCTAAACTGAATAGAAAGAAACACCAGC
 
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rJMFF015H01+          TTGCACTAACGGATCCCTCTAAACCGAGGCAAAACCTAAGTGGCTACAATTTCTTTTTCG
rJMFF036I06+          TTGCACTAACGGATCCCTCTAAACCGATGCAAAACCTAAGTGGCTACAATTTCTTTTTCG
                      ____________________________________________________________
consensus             TTGCACTAACGGATCCCTCTAAACCGATGCAAAACCTAAGTGGCTACAATTTCTTTTTCG
 
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rJMFF015H01+          CTGAACACTATGCCAGGCTGAAGCCTGCACATCACGGCCACGTGAGAGCTATCAGCAAGG
rJMFF036I06+          CTGAACACTATGCCAGGCTGAAGCCTGCACATCACGGCCACGTGAGAGCTATCAGCAAGG
                      ____________________________________________________________
consensus             CTGAACACTATGCCAGGCTGAAGCCTGCACATCACGGCCACGTGAGAGCTATCAGCAAGG
 
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rJMFF015H01+          AAATTGGAATGCTATGGAGCAGACTCTCAGACGCCGAGAAACAGGTTTATCAGGAAAAGG
rJMFF036I06+          AAATTGGAATGCTATGGAGCAGACTCTCAGACGCCGAGAAACAGGTTTATCAGGAAAAGG
                      ____________________________________________________________
consensus             AAATTGGAATGCTATGGAGCAGACTCTCAGACGCCGAGAAACAGGTTTATCAGGAAAAGG
 
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rJMFF015H01+          GCTTGAGAGATAAGGAGAGATACAGGACCGAGATGCTCGAGTATAAGTCCTCTCAGCCCT
rJMFF036I06+          GCTTGAGAGATAAGGAGAGATACAGGACCGAGATGCTCGAGTATAAGTCCTCTCAGCCCT
                      ____________________________________________________________
consensus             GCTTGAGAGATAAGGAGAGATACAGGACCGAGATGCTCGAGTATAAGTCCTCTCAGCCCT
 
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rJMFF015H01+          TACAAATTCAATAGATATAATTTGGGAAATTGTTTCCCATGGGATCACTACTTCCTACAA
rJMFF036I06+          TACAAATTCAATAGATATAATTTGGGAAATTGTTTCCCATGGGATCACTACTTCCTACAA
                      ____________________________________________________________
consensus             TACAAATTCAATAGATATAATTTGGGAAATTGTTTCCCATGGGATCACTACTTCCTACAA
 
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rJMFF015H01+          CGGTTTTGGGAAATTGTTTTTGTCAATTGGCCTAGTTTAGATCTTTCCCTTGCAACCTTT
rJMFF036I06+          CGGTTTTGGGAAATTGTTTTTGTCAATTGGCCTAGTTTAGATCTTTCCCTTGCAACCTTT
                      ____________________________________________________________
consensus             CGGTTTTGGGAAATTGTTTTTGTCAATTGGCCTAGTTTAGATCTTTCCCTTGCAACCTTT
 
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rJMFF015H01+          TCACCTAATATTCGGTTTGGTGGAAATGAAATCCTCAGGCCTTAATTAGTGCACAGTTTG
rJMFF036I06+          TCACCTAATATTCGGTTTGGTGGAAATGAAATCCTCAGGCCTTAATTAGTGCACAGTTTG
                      ____________________________________________________________
consensus             TCACCTAATATTCGGTTTGGTGGAAATGAAATCCTCAGGCCTTAATTAGTGCACAGTTTG
 
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rJMFF015H01+          GAACATAGGAAATGGGCTTTTCTTTCCTTTAGTATTAGTTTTGGAGTGGACAAACTTCAT
rJMFF036I06+          GAACATAGGAAATGGGCTTTTCTTTCCTTTAGTATTAGTTTTGGAGTGGACAAACTTCAT
                      ____________________________________________________________
consensus             GAACATAGGAAATGGGCTTTTCTTTCCTTTAGTATTAGTTTTGGAGTGGACAAACTTCAT
 
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rJMFF015H01+          AGTCAAGTCATGTTCATCTAGTTTGACAATTGAACATGAATGTAAATTAAAA        
rJMFF036I06+          AGTCAAGTCATGTTCATCTAGTTTGACAATTGAACATGAATGTAAATTAAAATNAAGANA
                      ____________________________________________________________
consensus             AGTCAAGTCATGTTCATCTAGTTTGACAATTGAACATGAATGTAAATTAAAATNAAGANA