Contig 005470:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P09Sequence753005470 (4)ref|XP_011009777.1|3e-59PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondr
JMFF035L24Sequence590009276 (3)ref|XP_009781367.1|7e-56PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondr693005470 (4)ref|XP_009616314.1|1e-66PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondr
JMSF017N01Sequence237009276 (3)779005470 (4)ref|XP_003556404.1|4e-90PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondr
JMSF037O13Sequence465009276 (3)ref|XP_009616314.1|1e-26PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondr653005470 (4)ref|XP_009616314.1|7e-65PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondr

Alignment

This contig is upended


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rJMSF017N01+                         CGCAAGTACGTGCCAACATGAGAACTGGTAGAGTAACTGATGCTG
                      ____________________________________________________________
consensus                            CGCAAGTACGTGCCAACATGAGAACTGGTAGAGTAACTGATGCTG
 
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rJMSF017N01+          GTGTGACATCATCTTTACTAGAAACTGTTGAGAGCAGTGATCTGATTGCATATGGCCTTA
rJMFF005P09+                                    GTTGAGAGCAGTGATCTGATTGCATATGNCCTTA
                      ____________________________________________________________
consensus             GTGTGACATCATCTTTACTAGAAACTGTTGAGAGCAGTGATCTGATTGCATATGGCCTTA
 
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rJMSF017N01+          TTCCAGAGTTTATCGGGCGCTTCCCTATTTTAGTTAGTTTGTCAGCACTTACTGAGAACC
rJMFF005P09+          TTCCAGAGTTTATCGGGCGCTTCCCTATTTTAGTTAGTTTGTCAGCACTTACTGAGAACC
rJMSF037O13+                                             AGTTTGTCAGCACTTACTGAGAACC
rJMFF035L24+                                    ATTTTAGTTAGTTTGTCAGCACTTACTGAGAACC
                      ____________________________________________________________
consensus             TTCCAGAGTTTATCGGGCGCTTCCCTATTTTAGTTAGTTTGTCAGCACTTACTGAGAACC
 
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rJMSF017N01+          AACTTGTT-CAGGTCCTCGTAGACCCAAAAAATGCTCTTTGCAAGCAGTACAAGAAATTG
rJMFF005P09+          AACTTGTTCCAGGTCCTCGTAGACCCAAAAAATGCTCTTTGCAAGCAGTACAAGAAATTG
rJMSF037O13+          AACTTGTT-CAGGTCCTCGTAGACCCAAAAAATGCTCTTTGCAAGCAGTACAAGAAATTG
rJMFF035L24+          AACTTGTT-CAGGTCCTCGTAGACCCAAAAAATGCTCTTTGCAAGCAGTACAAGAAATTG
                      ____________________________________________________________
consensus             AACTTGTT-CAGGTCCTCGTAGACCCAAAAAATGCTCTTTGCAAGCAGTACAAGAAATTG
 
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rJMSF017N01+          TTTAACATGAACAAAGTGAAGCTACAATTTACAGACGAGGCGTTGAGGTTAATTGCGAAG
rJMFF005P09+          TTTAACATGAACAAAGTGAAGCTACAATTTACAGACGAGGCGTTGAGGTTAATTGCGAAG
rJMSF037O13+          TTTAACATGAACAAAGTGAAGCTACAATTTACAGACGAGGCGTTGAGGTTAATTGCGAAG
rJMFF035L24+          TTTAACATGAACAAAGTGAAGCTACAATTTACAGACGAGGCGTTGAGGTTAATTGCGAAG
                      ____________________________________________________________
consensus             TTTAACATGAACAAAGTGAAGCTACAATTTACAGACGAGGCGTTGAGGTTAATTGCGAAG
 
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rJMSF017N01+          AAAGCGTATGCTAAAAACACCGGCGCAAGAGGGTTAAGAGCCATACTGGAGAGCATATTA
rJMFF005P09+          AAAGCGTATGCTAAAAACACCGGCGCAAGAGGGTTAAGAGCCATACTGGAGAGCATATTA
rJMSF037O13+          AAAGCGTATGCTAAAAACACCGGCGCAAGAGGGTTAAGAGCCATACTGGAGAGCATATTA
rJMFF035L24+          AAAGCGTATGCTAAAAACACCGGCGCAAGAGGGTTAAGAGCCATACTGGAGAGCATATTA
                      ____________________________________________________________
consensus             AAAGCGTATGCTAAAAACACCGGCGCAAGAGGGTTAAGAGCCATACTGGAGAGCATATTA
 
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rJMSF017N01+          ACTGATGCTATGTATGAGATTCCTGAAGTTAAGGCAGGGAACGAGAAAGTAGATGCTGTT
rJMFF005P09+          ACTGATGCTATGTATGAGATTCCTGAAGTTAAGGCAGGGAACGAGAAAGTAGATGCTGTT
rJMSF037O13+          ACTGATGCTATGTATGAGATTCCTGAAGTTAAGGCAGGGAACGAGAAAGTAGATGCTGTT
rJMFF035L24+          ACTGATGCTATGTATGAGATTCCTGAAGTTAAGGCAGGGAACGAGAAAGTAGATGCTGTT
                      ____________________________________________________________
consensus             ACTGATGCTATGTATGAGATTCCTGAAGTTAAGGCAGGGAACGAGAAAGTAGATGCTGTT
 
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rJMSF017N01+          GTGGTTGATGAAGAGTCGGTGGGTAGCGCAAGCGTCCCTGGATGTGGTGGTAAATTACTC
rJMFF005P09+          GTGGTTGATGAAGAGTCGGTGGGTAGCGCAAGCGTCCCTGGATGTGGTGGTAAATTACTC
rJMSF037O13+          GTGGTTGATGAAGAGTCGGTGGGTAGCGCAAGCGTCCCTGGATGTGGTGGTAAATTACTC
rJMFF035L24+          GTGGTTGATGAAGAGTCGGTGGGTAGCGCAAGCGTCCCTGGATGTGGTGGTAAATTACTC
                      ____________________________________________________________
consensus             GTGGTTGATGAAGAGTCGGTGGGTAGCGCAAGCGTCCCTGGATGTGGTGGTAAATTACTC
 
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rJMSF017N01+          TTTGGAAATGGTGCTTTGGAGCAATACCTTGCTCGTAATCAGTCTAAAGATCAAAAGGAA
rJMFF005P09+          TTTGGAAATGGTGCTTTGGAGCAATACCTTGCTCGGAATCAGTCTAAAGATCAAAAGGAA
rJMSF037O13+          TTTGGAAATGGTGCTTTGGAGCAATACCTTGCTCGGAATCAGTCTAAAGATCAAAAGGAA
rJMFF035L24+          TTTGGAAATGGTGCTTTGGAGCAATACCTTGCTCGGAATCAGTCTAAAGATCAAAAGGAA
                      ____________________________________________________________
consensus             TTTGGAAATGGTGCTTTGGAGCAATACCTTGCTCGGAATCAGTCTAAAGATCAAAAGGAA
 
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rJMSF017N01+          ATTGCTGAATCGGAACTGCAAGATGGTGGTGTTTCAGAAGTTTCATCAAGAGCAATGAGC
rJMFF005P09+          ATTGCTGAATCGGAACTGCAAGATGGTGGTGTTTCAGAAGTTTCATCAAGAGCAATGAGC
rJMSF037O13+          ATTGCTGAATCGGAACTGCAAGATGGTGGTGTTTCAGAAGTTTCATCAAGAGCAATGAGC
rJMFF035L24+          ATTGCTGAATCGGAACTGCAAGATGGTGGTGTTTCAGAAGTTTCATCAAGAGCAATGAGC
                      ____________________________________________________________
consensus             ATTGCTGAATCGGAACTGCAAGATGGTGGTGTTTCAGAAGTTTCATCAAGAGCAATGAGC
 
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rJMSF017N01+          ATATAACATTAACAGAATCAGATTTTGTAATTTGTAGTATTTCTGTCTATATAAATTGTT
rJMFF005P09+          ATATAACATTAACAGAATCAGATTTTGTAATTTGTAGTATTTCTGTCTATATAAATTGTT
rJMSF037O13+          ATATAACATTAACAGAATCAGATTTTGTAATTTGTAGTATTTCTGTCTATATAAATTGTT
rJMFF035L24+          ATATAACATTAACAGAATCAGATTTTGTAATTTGTAGTATTTCTGTCTATATAAATTGTT
                      ____________________________________________________________
consensus             ATATAACATTAACAGAATCAGATTTTGTAATTTGTAGTATTTCTGTCTATATAAATTGTT
 
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rJMSF017N01+          GTAAATTTTGCATCCATACTAGTTGTATTGATCCAATTGTAACACAATATAGGGCATCTA
rJMFF005P09+          GTAAATTTTGCATCCATACTAGTTGTATTGATCCAATTGTAACACAATATAGGGCATCTA
rJMSF037O13+          GTAAATTTTGCATCCATACTAGTTGTATTGATCCAATTGTAACACAATATAGGGCATCTA
rJMFF035L24+          GTAAATTTTGCATCCATACTAGTTGTATTGATCCAATTGTAACACAATATAGGGCATCTA
                      ____________________________________________________________
consensus             GTAAATTTTGCATCCATACTAGTTGTATTGATCCAATTGTAACACAATATAGGGCATCTA
 
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rJMSF017N01+          GCCATTTACCAGAAAGGTCACAGAAGATAGGGAATGAAGGGGATCAATAGAAGGAAGGAT
rJMFF005P09+          GCCATTTACCAGAAAGGTCACAGAAGATAGGGAATGAAGGGGATCAATAGAAGGAAGGAT
rJMSF037O13+          GCCATTTACCAGAAAGGTCACAGAAGATAGGGAATGAAGGGGATCAATAGAAGGAAGGAT
rJMFF035L24+          GCCATTTACCAGAAAGGTCACAGAAGATAGGGAATGAAGGGGATCAATAGAAGGAAGGAT
                      ____________________________________________________________
consensus             GCCATTTACCAGAAAGGTCACAGAAGATAGGGAATGAAGGGGATCAATAGAAGGAAGGAT
 
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rJMSF017N01+          TATGTACCATTTCTA                                             
rJMFF005P09+          TATGTACCATTTCTAGTTTTCATTCAGCATCTGTAGACATTCTT                
rJMSF037O13+          TATGTACCATTTCTAGTTT                                         
rJMFF035L24+          TATGTACCATTTCTAGTTTTCATTCAGCATCTGTAGACATTCTTTGGCAAGGGTATTTAT
                      ____________________________________________________________
consensus             TATGTACCATTTCTAGTTTTCATTCAGCATCTGTAGACATTCTTTGGCAAGGGTATTTAT