Contig 005468:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035E15Sequence624005468 (2)723005468 (2)ref|XP_006452612.1|7e-12hypothetical protein CICLE_v100094662mg, partial [Citrus clementina] gb|ESR65852

Alignment

This contig is upended


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JMFF035E15-                        TATTATATGGAACGTGAACAATTGCTTTGATAGTTTTTTACTGCTTA
                      ____________________________________________________________
consensus                          TATTATATGGAACGTGAACAATTGCTTTGATAGTTTTTTACTGCTTA
 
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JMFF035E15-           AACTACTCTGTTGTTTCCATCCATAATGATGGTTTAGCTTCATCCCCCTCTCTTTTATCT
                      ____________________________________________________________
consensus             AACTACTCTGTTGTTTCCATCCATAATGATGGTTTAGCTTCATCCCCCTCTCTTTTATCT
 
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JMFF035E15-           GTAAGTATTTTCTTCTTCCACCATAATGACGAGGGAAACCCACAGCAACTACCTGAGTGT
                      ____________________________________________________________
consensus             GTAAGTATTTTCTTCTTCCACCATAATGACGAGGGAAACCCACAGCAACTACCTGAGTGT
 
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JMFF035E15-           GTGCACTAGGTAAACCCCGCCTTGTGGCCCTAGTTGGCAAAGGACCACAAGCAGGTAATC
                      ____________________________________________________________
consensus             GTGCACTAGGTAAACCCCGCCTTGTGGCCCTAGTTGGCAAAGGACCACAAGCAGGTAATC
 
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JMFF035E15-           CAGCCTAAGTTGCCCATAGCTGACAAGCTCAAACCAAGAAGGCCAGTATCCTGTCTGCTT
                      ____________________________________________________________
consensus             CAGCCTAAGTTGCCCATAGCTGACAAGCTCAAACCAAGAAGGCCAGTATCCTGTCTGCTT
 
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JMFF035E15-           CCACTGAGAGTCAAACTTGGAACCTTGTATATAACTTTAAGTTTGAACCCCAAACCGAAG
                      ____________________________________________________________
consensus             CCACTGAGAGTCAAACTTGGAACCTTGTATATAACTTTAAGTTTGAACCCCAAACCGAAG
 
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JMFF035E15-           GGCCCCTCACGTCCCTTGCCCTAGAGAGCTTGTGAGAGGAGGTAAATCGCGGGATGTGCC
                      ____________________________________________________________
consensus             GGCCCCTCACGTCCCTTGCCCTAGAGAGCTTGTGAGAGGAGGTAAATCGCGGGATGTGCC
 
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JMFF035E15-           TCAGTAGCGCAATGATCTGAGTGCTTGTTTATTTCCGAGGATCTTACCCCTTGCAGGGTC
rJMFF035E15+                                                                   GTC
                      ____________________________________________________________
consensus             TCAGTAGCGCAATGATCTGAGTGCTTGTTTATTTCCGAGGATCTTACCCCTTGCAGGGTC
 
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JMFF035E15-           CAAACCCGGGCATTTGCTGGCCACCACAGCCACACTCGGGCTTTCACCACTAAGCTATTC
rJMFF035E15+          CAAACCCGGGCATTTGCTGNCCACCACAGCCACACTCGGGCTTTCACCACTAAGCTATTC
                      ____________________________________________________________
consensus             CAAACCCGGGCATTTGCTGGCCACCACAGCCACACTCGGGCTTTCACCACTAAGCTATTC
 
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JMFF035E15-           CCCGGGGGCTATATAACTTTGTTACTATTGAAGGTTGATTGGGTTTATCTATCTGTGCAT
rJMFF035E15+          CCCGGGGGCTATATAACTTTGTTACTATTGAAGGTTGATTGGGTTTATCTATCTGTGCAT
                      ____________________________________________________________
consensus             CCCGGGGGCTATATAACTTTGTTACTATTGAAGGTTGATTGGGTTTATCTATCTGTGCAT
 
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JMFF035E15-           GGGAGTCTGGTACTCTGGTAGCTTAAAATTCTCACTT                       
rJMFF035E15+          GGGAGTCTGGTACTCTGGTAGCTTAAAATTCTCACTTAATACTGTTTGACATCTGTTGTT
                      ____________________________________________________________
consensus             GGGAGTCTGGTACTCTGGTAGCTTAAAATTCTCACTTAATACTGTTTGACATCTGTTGTT
 
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rJMFF035E15+          GTGGATGCTGGTGAACTGCTCAATGCATGAACATCAATTTTTGATAGTATCAGGCATCCG
                      ____________________________________________________________
consensus             GTGGATGCTGGTGAACTGCTCAATGCATGAACATCAATTTTTGATAGTATCAGGCATCCG
 
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rJMFF035E15+          CATATCAGTTCTTCCGTTTGAAACTCGATCTCTTGTAGAAGCAGTACTGTGCCTGTACCA
                      ____________________________________________________________
consensus             CATATCAGTTCTTCCGTTTGAAACTCGATCTCTTGTAGAAGCAGTACTGTGCCTGTACCA
 
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rJMFF035E15+          ATGTGTGATTTGATGTGTTTGTTTGCCAATGTGATTACACTATTTCCAGATGACAATCCA
                      ____________________________________________________________
consensus             ATGTGTGATTTGATGTGTTTGTTTGCCAATGTGATTACACTATTTCCAGATGACAATCCA
 
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rJMFF035E15+          AGTGTTCATGTCATTATGCGCTTATTTTTCATCTTCTTCGATATCCGATAACATGTGTGT
                      ____________________________________________________________
consensus             AGTGTTCATGTCATTATGCGCTTATTTTTCATCTTCTTCGATATCCGATAACATGTGTGT
 
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rJMFF035E15+          TTGGATGCAGTAAATGAAGGAATGGGCAGAAGAGCAATCTACAAAGCTTTTTGCGAGTCT
                      ____________________________________________________________
consensus             TTGGATGCAGTAAATGAAGGAATGGGCAGAAGAGCAATCTACAAAGCTTTTTGCGAGTCT
 
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rJMFF035E15+          CTAGCTCTTGTTGCTGCTAGTATTCTGCAAGTTTATCTCCTGAAGCATTTGTTTGAGCGG
                      ____________________________________________________________
consensus             CTAGCTCTTGTTGCTGCTAGTATTCTGCAAGTTTATCTCCTGAAGCATTTGTTTGAGCGG
 
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rJMFF035E15+          AAGCTGGGGCAGTCCAGAGTTTAGTCTTTGGCCAATCTGATGAAGAAAGTCCAAACAAAT
                      ____________________________________________________________
consensus             AAGCTGGGGCAGTCCAGAGTTTAGTCTTTGGCCAATCTGATGAAGAAAGTCCAAACAAAT
 
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rJMFF035E15+          ATTTTTTTTTAAAATTTTATACAAGTACAAACAATTTCCCAACACCAAGCCAAAATGAGA
                      ____________________________________________________________
consensus             ATTTTTTTTTAAAATTTTATACAAGTACAAACAATTTCCCAACACCAAGCCAAAATGAGA
 
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rJMFF035E15+          ACTGTTTTCATTAATTTAATTAGGAAGTTAGGCCTTGATATGTTGTATAACAAAAATAAT
                      ____________________________________________________________
consensus             ACTGTTTTCATTAATTTAATTAGGAAGTTAGGCCTTGATATGTTGTATAACAAAAATAAT