Contig 005467:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-              CTACAATCGACTCCCCGTCCGGTTCTACCCACGCCGCGCTTCCTAGAGCTCGCCGGC
JMFF007J10-            GTCTACAATCGACTCCCCGTCCGGTTCTACCCACGCCGCGCTTCCTAGAGCTCGCCGGC
                      ____________________________________________________________
consensus              GTCTACAATCGACTCCCCGTCCGGTTCTACCCACGCCGCGCTTCCTAGAGCTCGCCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-           GACGAGTCAGCCTCCCCAGTCGCACCAGTCAGCCTCCGTCCGTCGCATCAGTCAGCCTCC
JMFF007J10-           GACGAGTCAGCCTCCCCAGTCGCACCAGTCAGCCTCCGTCCGTCGCATCAGTCAGCCTCC
                      ____________________________________________________________
consensus             GACGAGTCAGCCTCCCCAGTCGCACCAGTCAGCCTCCGTCCGTCGCATCAGTCAGCCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-           GTCCGTCGCATCAGTCAGCCATCGCCGACGCAGACTCGCCGGCAGAGCTCATCGCAAACG
JMFF007J10-           GTCCGTCGCATCAGTCAGCCATCGCCGACGCAGACTCGCCGGCAGAGCTCATCGCAAACG
                      ____________________________________________________________
consensus             GTCCGTCGCATCAGTCAGCCATCGCCGACGCAGACTCGCCGGCAGAGCTCATCGCAAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-           GCAGCGGCAGTCATCGAGCTTCTCCGACCTCCAGCAAACACCCACAAACGACCCTCCTCT
JMFF007J10-           GCAGCGGCAGTCATCGAGCTTCTCCGACCTCCAGCAAACACCCACAAACGACCCTCCTCT
                      ____________________________________________________________
consensus             GCAGCGGCAGTCATCGAGCTTCTCCGACCTCCAGCAAACACCCACAAACGACCCTCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-           GCCGAGTGCCTAAGCTCCTACACCAATGAAGCGTCCTAGGCAACAGGCTTAAACCTTAAA
JMFF007J10-           GCCGAGTGCCTAAGCTCCTACACCAATGAAGCGTCCTAGGCAACAGGCTTAAACCTTAAA
                      ____________________________________________________________
consensus             GCCGAGTGCCTAAGCTCCTACACCAATGAAGCGTCCTAGGCAACAGGCTTAAACCTTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-           GAAGTTGCAACAAAATGACACCGCGGTCCTAGAGAAAGACGGTAAGAGAATTGGCTAGAT
JMFF007J10-           GAAGTTGCAACAAAATGACACCGCGGTCCTAGAGAAAGACGGTAAGAGAATTGGCTAGAT
                      ____________________________________________________________
consensus             GAAGTTGCAACAAAATGACACCGCGGTCCTAGAGAAAGACGGTAAGAGAATTGGCTAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-           CGGCTCTTGGTCTACTAGAAGCTTCTTCTTCCTTGGGTCTTACATCCCAAACCATCGCCT
JMFF007J10-           CGGCTCTTGGTCTACTAGAAGCTTCTTCTTCCTTGGGTCTTACATCCCAAACCATCGCCT
                      ____________________________________________________________
consensus             CGGCTCTTGGTCTACTAGAAGCTTCTTCTTCCTTGGGTCTTACATCCCAAACCATCGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-           ATTAACGATTTGCCAAGGGATTATTCCGGCATCCCATTGAGTTCTCGAGGTTCATCACCA
JMFF007J10-           ATTAACGATTTGCCAAGGGATTATTCCGGCATCCCATTGAGTTCTCGAGGTTCATCACCA
rJMFF007J10+                                                        GAGGTTCATCACCA
                      ____________________________________________________________
consensus             ATTAACGATTTGCCAAGGGATTATTCCGGCATCCCATTGAGTTCTCGAGGTTCATCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-           AAATGCCTCGGTACTATTGTGACTACTGCGATACTTACTTGACTCATGATTCCCCTTCAG
JMFF007J10-           AAATGCCTCGGTACTATTGTGACTACTGCGATACTTACTTGACTCATGATTCCCCTTCAG
rJMFF007J10+          AAATGCCTCGGTACTATTGTGACTACTGCGATACTTACTTGACTCATGATTCCCNTTCAG
                      ____________________________________________________________
consensus             AAATGCCTCGGTACTATTGTGACTACTGCGATACTTACTTGACTCATGATTCCCCTTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034N22-           TCAGAAAACAGCATAATGCTGGCTACAAACA                             
JMFF007J10-           TCAGAAAACAGCATAATGCTGGCTACAAACATAAGGCAAATGTACGATCTTATTATCTAA
rJMFF007J10+          TCAGAAAACAGCATAATGCTGGCTACAAACATAAGGCAAATGTACGATCTTATTATCTAA
rJMFF034N22+                                                                 TCTAA
                      ____________________________________________________________
consensus             TCAGAAAACAGCATAATGCTGGCTACAAACATAAGGCAAATGTACGATCTTATTATCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007J10-           AGTTTGAAGAACAGCAAACACAGGCTTTGATAGAT                         
rJMFF007J10+          AGTTTGAAGAACAGCAAACACAGGCTTTGATAGATCAAAGGATTAAAGAGCGTCTTGGGC
rJMFF034N22+          AGTTTGAAGAACAGCAAACACAGGCTTTGATAGATCAAAGGATTAAAGAGCGTCTTGGGC
                      ____________________________________________________________
consensus             AGTTTGAAGAACAGCAAACACAGGCTTTGATAGATCAAAGGATTAAAGAGCGTCTTGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          AGGCAGCAGCATACCAACAAATTGGTGCCGCATATAACCAACATCTTGCTGCTTTCCCTG
rJMFF034N22+          AGGCAGCAGCATACCAACAAATTGGTGCCGCATATAACCAACATCTTGCTGCTTTCCCTG
                      ____________________________________________________________
consensus             AGGCAGCAGCATACCAACAAATTGGTGCCGCATATAACCAACATCTTGCTGCTTTCCCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          GACAACCACCGCGTATGCCTATCTTGCCACCTCCTTTTCTGCCTATTCCTGGAGCTCCGC
rJMFF034N22+          GACAACCACCGCGTATGCCTATCTTGCCACCTCCTTTTCTGCCTATTCCTGGAGCTCCGC
                      ____________________________________________________________
consensus             GACAACCACCGCGTATGCCTATCTTGCCACCTCCTTTTCTGCCTATTCCTGGAGCTCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          CTCCACAGTTAGTCCCAGGAGTAAGGCCTCCCATATTTCCTAGACCTCTTCCAGGTGCTC
rJMFF034N22+          CTCCACAGTTAGTCCCAGGAGTAAGGCCTCCCATATTTCCTAGACCTNTTCCAGGTGCTC
                      ____________________________________________________________
consensus             CTCCACAGTTAGTCCCAGGAGTAAGGCCTCCCATATTTCCTAGACCTCTTCCAGGTGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          CAGCTTATTATTCAGTACCTCCGGTTGCACCAGTTCCAGGACAACCCCCAGGTGGTGAAG
rJMFF034N22+          CAGCTTATTATTCAGTACCTCCGGTTGCACCAGTTCCAGGACAACCCCCAGGTGGTGAAG
                      ____________________________________________________________
consensus             CAGCTTATTATTCAGTACCTCCGGTTGCACCAGTTCCAGGACAACCCCCAGGTGGTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          GTGGCGGCGCAGGAGGCGGAGCACATGGAGGTGGGTACGCTGGTGGTGGAGGTGGTGGCG
rJMFF003C16+                                                        TGGAGGTGGTGGCG
rJMFF034N22+          GTGGCGGCGCAGGAGGCGGAGCACATGGAGGTGGGTACGCTGGTGGTGGAGGTGGTGGCG
                      ____________________________________________________________
consensus             GTGGCGGCGCAGGAGGCGGAGCACATGGAGGTGGGTACGCTGGTGGTGGAGGTGGTGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          GAGGATCAGGCGGAGGCGGCGGGGGAGGTGAACATGGAGGTGGATATGGCGGCGGTGCCG
rJMFF003C16+          GAGGATCAGGCGGAGGCGGCGGGGGAGGTGAACATGGAGGTGGATATGGCGGCGGTGCCG
rJMFF034N22+          GAGGATCAGGCGGAGGCGGCGGGGGAGGTGAACATGGAGGTGGATATGGCGGCGGTGCCG
                      ____________________________________________________________
consensus             GAGGATCAGGCGGAGGCGGCGGGGGAGGTGAACATGGAGGTGGATATGGCGGCGGTGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          GAGGTGGTGAAGGTGGTGGACATGGTGGGGGCTACGCCCCATGAATATATACCCAAAAGG
rJMFF003C16+          GAGGTGGTGAAGGTGGTNGNCATGGTGGGGGCTACNCCCCATGAATATATACCCAAAAGG
rJMFF034N22+          GAGGTGGTGAAGGTGGTGGACATGGTGGGGGCTACGCCCCATGAATATATACCCAAAAGG
                      ____________________________________________________________
consensus             GAGGTGGTGAAGGTGGTGGACATGGTGGGGGCTACGCCCCATGAATATATACCCAAAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          GGATATGATTACTCTTCTTACATATACACCGGCCGCATATAATTAAAATAAGTAAATGCA
rJMFF003C16+          GGATATGATTACTCTTCTTACATATACACCGGCCGCATATAATTAAAATAAGTAAATGCA
rJMFF034N22+          GGATATGATTACTCTTCTTACATATACACCGGCCGCATATAATTAAAATAAGTAAATGCA
                      ____________________________________________________________
consensus             GGATATGATTACTCTTCTTACATATACACCGGCCGCATATAATTAAAATAAGTAAATGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          TGTAAGATATGTGTAAGAAGATGGTTATTATGAAAAGTAATTAATTAAGCAGAAGCATGC
rJMFF003C16+          TGTAAGATATGTGTAAGAAGATGGTTATTATGAAAAGTAATTAATTAAGCAGAAGCATGC
rJMFF034N22+          TGTAAGATATGTGTAAGAAGATGGTTATTATGAAAAGTAATTAATTAAGCAGAAGCATGC
                      ____________________________________________________________
consensus             TGTAAGATATGTGTAAGAAGATGGTTATTATGAAAAGTAATTAATTAAGCAGAAGCATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007J10+          AGCAATGCAAGCTAAGGGCTGCACATGCATGCATATATGTATTAATGTTTCTTATACA  
rJMFF003C16+          AGCAATGCAAGCTAAGGGCTGCACATGCATGCATATATGTATTAATG             
rJMFF034N22+          AGCAATGCAAGCTAAGGGCTGCACATGCATGCATATATGTATTAATGTTTCTTATACATA
                      ____________________________________________________________
consensus             AGCAATGCAAGCTAAGGGCTGCACATGCATGCATATATGTATTAATGTTTCTTATACATA