Contig 005466:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034N01Sequence503004649 (7)ref|XP_009629270.1|4e-22PREDICTED: uncharacterized protein LOC104119450 isoform X2 [Nicotiana tomentosi434005466 (3)
JMFF045E21Sequence613004649 (7)ref|XP_009629270.1|3e-48PREDICTED: uncharacterized protein LOC104119450 isoform X2 [Nicotiana tomentosi253005466 (3)
JMSF015C07Sequence186005466 (3)

Alignment

This contig is upended


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rJMFF034N01+                                                       GATTACCCGCTCCCA
                      ____________________________________________________________
consensus                                                          GATTACCCGCTCCCA
 
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rJMFF034N01+          GACTATGGTCTTAGGTAGCCCGTCTCCCCGACAACTCAGACAAGCGCGGTCGTTCCCCTC
                      ____________________________________________________________
consensus             GACTATGGTCTTAGGTAGCCCGTCTCCCCGACAACTCAGACAAGCGCGGTCGTTCCCCTC
 
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rJMFF045E21+                        GGTGATGATTTCCTCGGGCTTAGTCTTGAAATAGCTTGTGTCAACT
rJMFF034N01+          ACAACCGCAACCAAGGTGATGATCTCCTCGGGCTTAGTCTTGAAATAGCTTGTGTCAACT
                      ____________________________________________________________
consensus             ACAACCGCAACCAAGGTGATGATTTCCTCGGGCTTAGTCTTGAAATAGCTTGTGTCAACT
 
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rJMFF045E21+          CCATTATGCTTTTTTTCTTGAAAAAACTTCATTTTTTTCTTTCTTTTTTTCTCGTTTTTT
rJMSF015C07+                                                           TCTCGTTTNTT
rJMFF034N01+          CCATTATGCTTCTTTACTTGAAAAAACTTCATTTTTTTCTTTCTTTCTTTCTCGTTTCTT
                      ____________________________________________________________
consensus             CCATTATGCTTTTTTTCTTGAAAAAACTTCATTTTTTTCTTTCTTTTTTTCTCGTTTTTT
 
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rJMFF045E21+          TTAAACCCTGATAAGCGGAATTTTGGAAGCTGCAGATGAGTAGGAA-TGGTGGGGGGGGT
rJMSF015C07+          CTAANCCNTGATAAGCGGAANTNTGGAAGCTGCAGATGAGTAGGAACNGGCGGTGGGGGT
rJMFF034N01+          CTAAACCTTGATAAGCGGAATTTTGGAAGCTGCAGATGAGTAGGAA-TGGTGGTGGGGGT
                      ____________________________________________________________
consensus             CTAAACCTTGATAAGCGGAATTTTGGAAGCTGCAGATGAGTAGGAA-TGGTGGTGGGGGT
 
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rJMFF045E21+          ATATTTTCATGTTAAATGCTCATGAAATTTAAAAGCAGAAAAAGAAAAAAGGAAGGGAAA
rJMSF015C07+          ATATTTTCATGNTAAATGNTCATGAAATCTAANAGCAGAAAAAGAAAAAAGGAAGGGAAA
rJMFF034N01+          ATATTTTCATGTTAAATGCTCATGAAATTTAAAAGCAGAAAAAGAAAAAAGGAAGGGAAA
                      ____________________________________________________________
consensus             ATATTTTCATGTTAAATGCTCATGAAATTTAAAAGCAGAAAAAGAAAAAAGGAAGGGAAA
 
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rJMFF045E21+          GGTAAGTGGTGGAAGGGGATTCAAGAGC                                
rJMSF015C07+          GGTAAGTGGTGGAAGGGGATTCAAGAGCATTGTACATACTCTGA                
rJMFF034N01+          GGTAAGTGGTGGAAGGGGATTCAAGAGCATTGTACATACTCTGATGATAATATTCTGCTT
                      ____________________________________________________________
consensus             GGTAAGTGGTGGAAGGGGATTCAAGAGCATTGTACATACTCTGATGATAATATTCTGCTT
 
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rJMFF034N01+          TCTTTTTGTTTTTGGTTTTGTTCCTTGGAGAGTTTTGGGGTATAGCCAGCCTGTTATACC
                      ____________________________________________________________
consensus             TCTTTTTGTTTTTGGTTTTGTTCCTTGGAGAGTTTTGGGGTATAGCCAGCCTGTTATACC