Contig 005460:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004K02Sequence467007336 (3)ref|XP_002272112.1|2e-16PREDICTED: shaggy-related protein kinase theta [Vitis vinifera] emb|CBI38764.3| 684005460 (3)ref|XP_006339456.1|7e-76PREDICTED: shaggy-related protein kinase theta-like [Solanum tuberosum]
JMFF014L24Sequence278007336 (3)757005460 (3)gb|AAT81407.1|1e-93shaggy-related protein kinase 6 [Solanum peruvianum]
JMFF031M02Sequence560007336 (3)ref|XP_009610982.1|2e-31PREDICTED: shaggy-related protein kinase epsilon-like [Nicotiana tomentosiformi657005460 (3)ref|XP_006339456.1|5e-30PREDICTED: shaggy-related protein kinase theta-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014L24+                                              TACGGAGTATACAACTGCTATTGA
                      ____________________________________________________________
consensus                                                 TACGGAGTATACAACTGCTATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+                                                           CTATTTCCCGG
rJMFF014L24+          TATGTGGTCCGTTGGTTGTGTTATGGCTGAGCTACTTCTTGGACGGCCTCTATTTCCCGG
                      ____________________________________________________________
consensus             TATGTGGTCCGTTGGTTGTGTTATGGCTGAGCTACTTCTTGGACGGCCTCTATTTCCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          GGAAAGCAGTATCGATCAACTAGTTGAAGTCATTAAGATTTTGGGGACACCAACTAGAGA
rJMFF014L24+          GGAAAGCAGTATCGATCAACTAGTTGAAGTCATTAAGATTTTGGGGACACCAACTAGAGA
                      ____________________________________________________________
consensus             GGAAAGCAGTATCGATCAACTAGTTGAAGTCATTAAGATTTTGGGGACACCAACTAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          GGAGATTAAGTTAATGAATCCGAACTATACAGAATTCAAGTTTCCTCAAATTAAAGCTCA
rJMFF014L24+          GGAGATTAAGTTAATGAATCCGAACTATACAGAATTCAAGTTTCCTCAAATTAAAGCTCA
                      ____________________________________________________________
consensus             GGAGATTAAGTTAATGAATCCGAACTATACAGAATTCAAGTTTCCTCAAATTAAAGCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          TCCCTTGCACAAGGTATTTCATAAAAGAATGCCTGCTGAGGCAGTGGATCTAATATCGAG
rJMFF014L24+          TCCCTTGCACAAGGTATTTCATAAAAGAATGCCTGCTGAGGCAGTGGATCTAATATCGAG
                      ____________________________________________________________
consensus             TCCCTTGCACAAGGTATTTCATAAAAGAATGCCTGCTGAGGCAGTGGATCTAATATCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          ACTGCTCCAGTACTCACCGACTCTGCGTTGTACTGCTTTGGAGGCTTGCGCACACCCGTT
rJMFF014L24+          ACTGCTCCAGTACTCACCGACTCTGCGTTGTACTGCTTTGGAGGCTTGCGCACACCCGTT
rJMFF031M02+             GCTCCAGTACTCACCGACTCTGCGTTGTACTGCTTTGGAGGCTTGCGCACACCCGTT
                      ____________________________________________________________
consensus             ACTGCTCCAGTACTCACCGACTCTGCGTTGTACTGCTTTGGAGGCTTGCGCACACCCGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          CTTTGATTCTTTGCGAGAGCCAAACGCGTGCCTACCGAATGGCAAACCTCTGCCTGCTCT
rJMFF014L24+          CTTTGATTCTTTGCGAGAGCCAAACGCGTGCCTACCGAATGGCAAACCTCTGCCTGCTCT
rJMFF031M02+          CTTTGATTCTTTGCGAGAGCCAAACGCGTGCCTACCGAATGGCAAACCTCTGCCTGCTCT
                      ____________________________________________________________
consensus             CTTTGATTCTTTGCGAGAGCCAAACGCGTGCCTACCGAATGGCAAACCTCTGCCTGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          ATTCAATTTTACTCCTCAAGAGCTAGCCAGTGCGCCAGCCGAGCTGCGAAACCGTCTCAT
rJMFF014L24+          ATTCAATTTTACTCCTCAAGAGCTAGCCAGTGCGCCAGCCGAGCTGCGAAACCGTCTCAT
rJMFF031M02+          ATTCAATTTTACTCCTCAAGAGCTAGCCAGTGCGCCAGCCGAGCTGCGAAACCGTCTCAT
                      ____________________________________________________________
consensus             ATTCAATTTTACTCCTCAAGAGCTAGCCAGTGCGCCAGCCGAGCTGCGAAACCGTCTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          CCCCGAGCACATGAGCAAATCTATATGTTGAGAGCCGCGGCTATCAATTTAGGCGGGTGT
rJMFF014L24+          CCCCGAGCACATGAGCAAATCTATATGTTGAGAGCCGCGGCTATCAATTTAGGCGGGTGT
rJMFF031M02+          CCCCGAGCACATGAGCAAATCTATATGTTGAGAGCCGCGGCTATCAATTTAGGCGGGTGT
                      ____________________________________________________________
consensus             CCCCGAGCACATGAGCAAATCTATATGTTGAGAGCCGCGGCTATCAATTTAGGCGGGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          AAATTTGTTTCTGCAAGGTTGGGTTATCAATACGCAATCACTGCTATTTCGTCTTCGCGC
rJMFF014L24+          AAATTTGTTTCTGCAAGGTTGGGTTATCAATACGCAATCACTGCTATTTCGTCTTCGCGC
rJMFF031M02+          AAATTTGTTTCTGCAAGGTTGGGTTATCAATACGCAATCACTGCTATTTCGTCTTCGCGC
                      ____________________________________________________________
consensus             AAATTTGTTTCTGCAAGGTTGGGTTATCAATACGCAATCACTGCTATTTCGTCTTCGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          TAAGGATGAAGGATATAGAACAGGTTGTCAAATGTCAAGGTGATCTTCTATGGATGATGG
rJMFF014L24+          TAAGGATGAAGGATATAGAACAGGTTGTCAAATGTCAAGGTGATCTTCTATGGATGATGG
rJMFF031M02+          TAAGGATGAAGGATATAGAACAGGTTGTCAAATGTCAAGGTGATCTTCTATGGATGATGG
                      ____________________________________________________________
consensus             TAAGGATGAAGGATATAGAACAGGTTGTCAAATGTCAAGGTGATCTTCTATGGATGATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          ATGGCATGCATATTACTATATGGTGTGTAAATAGTTAACTCTCATGAATGCCTTGGCTGT
rJMFF014L24+          ATGGCATGCATATTACTATATGGTGTGTAAATAGTTAACTCTCATGAATGCCTTGGCTGT
rJMFF031M02+          ATGGCATGCATATTACTATATGGTGTGTAAATAGTTAACTCTCATGAATGCCTTGGCTGT
                      ____________________________________________________________
consensus             ATGGCATGCATATTACTATATGGTGTGTAAATAGTTAACTCTCATGAATGCCTTGGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          TCTTAGATGATGATGATGATGGGAGAGAGAAAGAGAGACTGATTTCTTGTGTTCTTGATG
rJMFF014L24+          TCTTAGATGATGATGATGATGGGAGAGAGAAAGAGAGACTGATTTCTTGTGTTCTTGATG
rJMFF031M02+          TCTTAGATGATGATGATGATGGGAGAGAGAAAGAGAGACTGATTTCTTGTGTTCTTGATG
                      ____________________________________________________________
consensus             TCTTAGATGATGATGATGATGGGAGAGAGAAAGAGAGACTGATTTCTTGTGTTCTTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004K02+          CTGGGCACAAATG                                               
rJMFF014L24+          CTGGGCACAAATG                                               
rJMFF031M02+          CTGGGCACAAATGGCTTTAGCTACTTTGGGTTGTTTATACACTTGTGTGAGAGGTCAATA
                      ____________________________________________________________
consensus             CTGGGCACAAATGGCTTTAGCTACTTTGGGTTGTTTATACACTTGTGTGAGAGGTCAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031M02+          GATTGACTTAGGGATTACCTTAATTCTGCACCCTTTTCTTGTCTTTCTTCCACGTGTTGT
                      ____________________________________________________________
consensus             GATTGACTTAGGGATTACCTTAATTCTGCACCCTTTTCTTGTCTTTCTTCCACGTGTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031M02+          CTTTCAAGGGAAGTGATTTCTGTACCAAAAACCATTCTTGCACGAAACACTATATTTATT
                      ____________________________________________________________
consensus             CTTTCAAGGGAAGTGATTTCTGTACCAAAAACCATTCTTGCACGAAACACTATATTTATT