Contig 005455:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030G23Sequence565005455 (4)ref|XP_009786242.1|173PREDICTED: uncharacterized protein LOC104234386 [Nicotiana sylvestris]653005455 (4)ref|XP_009786242.1|185PREDICTED: uncharacterized protein LOC104234386 [Nicotiana sylvestris]
JMSF030J01Sequence661005455 (4)ref|XP_009786242.1|185PREDICTED: uncharacterized protein LOC104234386 [Nicotiana sylvestris]681005455 (4)ref|XP_009786242.1|160PREDICTED: uncharacterized protein LOC104234386 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF030G23-                                                               GTTCAAAG
                      ____________________________________________________________
consensus                                                                 GTTCAAAG
 
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JMFF030G23-           TTCAAACCCCAAACCCAAAAATCAATTCATCACAAAACCCACCATCTCTGTATCCTGCTG
JMSF030J01-                                       ATCACAAAACCCACCATCTCTGTATCCTGCTG
rJMSF030J01+                                                              TCCTGCTG
                      ____________________________________________________________
consensus             TTCAAACCCCAAACCCAAAAATCAATTCATCACAAAACCCACCATCTCTGTATCCTGCTG
 
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JMFF030G23-           TAGACCAAACAAAGATCCATGGCGGAAACCAATGAAGAACCTCAAACTCCACCTCCACCC
JMSF030J01-           TAGACCAAACAAAGATCCATGGCGGAAACCAATGAAGAACCTCAAACTCCACCTCCACCC
rJMSF030J01+          TAGACCAAACAAAGATCCATGGCGGAAACCAATGAAGAACCTCAAACTCCACCTCCACCC
                      ____________________________________________________________
consensus             TAGACCAAACAAAGATCCATGGCGGAAACCAATGAAGAACCTCAAACTCCACCTCCACCC
 
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JMFF030G23-           TATAATTCTTCCATGATTCTTCTAAGAGTGATGAGCAAGAGAAGGACAT-GGGCTTTCCT
JMSF030J01-           TATAATTCTTCCATGATTCTTCTAAGAGTGATGAGCAAGAGAAGGACAT-GGGCTTTCCT
rJMSF030J01+          TATAATTCTTCCATGATTCTTCTAAGAGTGATGAGCAAGAGAAGGACATGGGGCTTTCCT
rJMFF030G23+               TTCTTCCATGATTCTTCTAAGAGTGATGAGCAAGAGAAGGACAT-GGGCTTTCCT
                      ____________________________________________________________
consensus             TATAATTCTTCCATGATTCTTCTAAGAGTGATGAGCAAGAGAAGGACAT-GGGCTTTCCT
 
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JMFF030G23-           CTTTATCTTCGTCTACACCCTTCTCCTTTCCATTTCCTGGAACTTTCTCAAATCCGTCCT
JMSF030J01-           CTTTATCTTCGTCTACACCCTTCTCCTTTCCATTTCCTGGAACTTTCTCAAATCCGTCCT
rJMSF030J01+          CTTTATCTTCGTCTACACCCTTCTCCTTTCCATTTCCTGGAACTTTCTCAAATCCGTCCT
rJMFF030G23+          CTTTATCTTCGTCTACACCCTTCTCCTTTCCATTTCCTGGAACTTTCTCAAATCCGTCCT
                      ____________________________________________________________
consensus             CTTTATCTTCGTCTACACCCTTCTCCTTTCCATTTCCTGGAACTTTCTCAAATCCGTCCT
 
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JMFF030G23-           CTCCTGGTACGAATCCACCTCCTCCGCCACATCTTCCGGCTGGCCGGCCCTTTACGCCTC
JMSF030J01-           CTCCTGGTACGAATCCACCTCCTCCGCCACATCTTCCGGCTGGCCGGCCCTTTACGCCTC
rJMSF030J01+          CTCCTGGTACGAATCCACCTCCTCCGCCACATCTTCCGGCTGGCCGGCCCTTTACGCCTC
rJMFF030G23+          CTCCTGGTACGAATCCACCTCCTCCGCCACATCTTCCGGCTGGCCGGCCCTTTACGCCTC
                      ____________________________________________________________
consensus             CTCCTGGTACGAATCCACCTCCTCCGCCACATCTTCCGGCTGGCCGGCCCTTTACGCCTC
 
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JMFF030G23-           CGTTCTCTTAGGGGTAGCGTTCGGCCTTCTCTCCATGGTCGCCGCGCTCGCCGTCGCCGT
JMSF030J01-           CGTTCTCTTAGGGGTAGCGTTCGGCCTTCTCTCCATGGTCGCCGCGCTCGCCGTCGCCGT
rJMSF030J01+          CGTTCTCTTAGGGGTAGCGTTCGGCCTTCTCTCCATGGTCGCCGCGCTCGCCGTCGCCGT
rJMFF030G23+          CGTTCTCTTAGGGGTAGCGTTCGGCCTTCTCTCCATGGTCGCCGCGCTCGCCGTCGCCGT
                      ____________________________________________________________
consensus             CGTTCTCTTAGGGGTAGCGTTCGGCCTTCTCTCCATGGTCGCCGCGCTCGCCGTCGCCGT
 
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JMFF030G23-           TCCGGCCACCCTCGTCACTTGGATCACAGTATTGGTCTTGCTCACTTTCTGCGGGAAGCC
JMSF030J01-           TCCGGCCACCCTCGTCACTTGGATCACAGTATTGGTCTTGCTCACTTTCTGCGGGAAGCC
rJMSF030J01+          TCCGGCCACCCTCGTCACTTGGATCACAGTATTGGTCTTGCTCACTTTCTGCGGGAAGCC
rJMFF030G23+          TCCGGCCACCCTCGTCACTTGGATCACAGTATTGGTCTTGCTCACTTTCTGCGGGAAGCC
                      ____________________________________________________________
consensus             TCCGGCCACCCTCGTCACTTGGATCACAGTATTGGTCTTGCTCACTTTCTGCGGGAAGCC
 
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JMFF030G23-           CCGGAGAGCTCTGGTTATGGAGGCCAAGAAGCTCACTGCTGAAATCTCTGGATTCGTGTT
JMSF030J01-           CCGGAGAGCTCTGGTTATGGAGGCCAAGAAGCTCACTGCTGAAATCTCTGGATTCGTGTT
rJMSF030J01+          CCGGAGAGCTCTGGTTATGGAGGCCAAGAAGCTCACTGCTGAAATCTCTGGATTCGTGTT
rJMFF030G23+          CCGGAGAGCTCTGGTTATGGAGGCCAAGAAGCTCACTGCTGAAATCTCTGGATTCGTGTT
                      ____________________________________________________________
consensus             CCGGAGAGCTCTGGTTATGGAGGCCAAGAAGCTCACTGCTGAAATCTCTGGATTCGTGTT
 
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JMFF030G23-           TAAGGTCTTGATTAAGGAGGGCAACGTCGTCGCCGCCCTCTGCGCCGTTCTCGGCTACTT
JMSF030J01-           TAAGGTCTTGATTAAGGAGGGCAACGTCGTCGCCGCCCTCTGCGCCGTTCTCGGCTACTT
rJMSF030J01+          TAAGGTCTTGATTAAGGAGGGCAACGTCGTCGCCGCCCTCTGCGCCGTTCTCGGCTACTT
rJMFF030G23+          TAAGGTCTTGATTAAGGAGGGCAACGTCGTCGCCGCCCTCTGCGCCGTTCTCGGCTACTT
                      ____________________________________________________________
consensus             TAAGGTCTTGATTAAGGAGGGCAACGTCGTCGCCGCCCTCTGCGCCGTTCTCGGCTACTT
 
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JMFF030G23-           CGCTCTTCTCCGGCGGAA                                          
JMSF030J01-           CGCTCTTCTCCGGCGGAACAGGGACGACGGCGCCACTGATTATTGACTCTCACCAATCCA
rJMSF030J01+          CGCTCTTCTCCGGCGGAACAGGGACGACGGCGCCACTGATTATTGACTCTCACCAATCCA
rJMFF030G23+          CGCTCTTCTCCGGCGGAACAGGGACGACGGCGCCACTGATTATTGACTCTCACCAATCCA
                      ____________________________________________________________
consensus             CGCTCTTCTCCGGCGGAACAGGGACGACGGCGCCACTGATTATTGACTCTCACCAATCCA
 
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JMSF030J01-           ATTCGGCGGCTCAATGTGAAAAATTCCCTAAGTTTATGGGGCTGGTTAGAAATTTTGTCA
rJMSF030J01+          ATTCGGCGGCTCAATGTG-AAAATTCCCTAAGTTTATGGGGCTGGTTAGAAATTTTGTCA
rJMFF030G23+          ATTTGGCGGCTCAATGTG-AAAATTCCCTAAGTTTATGGGGCTGGTTAGAAATTTTGTCA
                      ____________________________________________________________
consensus             ATTCGGCGGCTCAATGTG-AAAATTCCCTAAGTTTATGGGGCTGGTTAGAAATTTTGTCA
 
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JMSF030J01-           ATTTTACCCCCATGGATATGTAATTACTA                               
rJMSF030J01+          ATTTTACCCCCATGGATATGTAATTACTAAAAACTTGAATTTTCCTAGAATATTTTGTTT
rJMFF030G23+          ATTTTACCCCCATGGATATGTAATTACTAAAAACTTGAATTTTCCTAGAATATTTTGTTT
                      ____________________________________________________________
consensus             ATTTTACCCCCATGGATATGTAATTACTAAAAACTTGAATTTTCCTAGAATATTTTGTTT
 
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rJMSF030J01+          AGTGTTTTT                                                   
rJMFF030G23+          AGTGTTTTTTTCCCCAATTTTGGATAACAGTAACTAATTTTGTATGTACGATATCTGATT
                      ____________________________________________________________
consensus             AGTGTTTTTTTCCCCAATTTTGGATAACAGTAACTAATTTTGTATGTACGATATCTGATT