Contig 005450:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029O07Sequence410005450 (8)emb|CDP14659.1|7e-24unnamed protein product [Coffea canephora]751005450 (8)ref|XP_009776091.1|244PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00
JMSF005P05Sequence322005450 (8)344005508 (3)ref|XP_004229376.1|5e-18PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Solanu
JMSF005P07Sequence369005450 (8)
JMSF017P16Sequence425005450 (8)ref|XP_009617738.1|119PREDICTED: uncharacterized protein LOC104110026 [Nicotiana tomentosiformis]733005450 (8)ref|XP_009776091.1|249PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00
JMSF046F12Sequence759005450 (8)ref|XP_009776091.1|237PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00739005450 (8)ref|XP_009776091.1|242PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF005P07- AC
                      ____________________________________________________________
consensus AC
 
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rJMSF005P07- GAGGTTATCNATTATTCAATCCCTTGCTAGTGTTGTTTCTCAAATCTATTGCTATTTTCC
                      ____________________________________________________________
consensus GAGGTTATCNATTATTCAATCCCTTGCTAGTGTTGTTTCTCAAATCTATTGCTATTTTCC
 
. : . : . : . : . : . :
rJMSF005P07- CATTGCCCGTATTCATTGATANATATAGTTTTTGTTTTTCACGCAATTTAAGATCAAATT
                      ____________________________________________________________
consensus CATTGCCCGTATTCATTGATANATATAGTTTTTGTTTTTCACGCAATTTAAGATCAAATT
 
. : . : . : . : . : . :
rJMSF005P07- TTCGCAAAATCATTCTTTGATCTGTATGCAACTGTGTATTTACTTGCCTGCAGTTTCAAT
JMSF017P16- CAGTTTCAAT
JMFF029O07- CAGTTTCAAT
JMSF046F12- CAGTTTCAAT
                      ____________________________________________________________
consensus TTCGCAAAATCATTCTTTGATCTGTATGCAACTGTGTATTTACTTGCCTGCAGTTTCAAT
 
. : . : . : . : . : . :
rJMSF005P07- TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
JMSF017P16- TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
JMSF005P05+ ACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
JMFF029O07- TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
JMSF046F12- TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
                      ____________________________________________________________
consensus TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
 
. : . : . : . : . : . :
rJMSF005P07- CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
JMSF017P16- CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
JMSF005P05+ CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
JMFF029O07- CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
JMSF046F12- CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
                      ____________________________________________________________
consensus CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
 
. : . : . : . : . : . :
rJMSF005P07- GCCCCACCAAGATCG
JMSF017P16- GCCCCACCAAGATCG
JMSF005P05+ GCCCCACCAAGATCG
JMFF029O07- GCCCCACCAAGATCGATCTGATGGGGTTGAATCTGTGAATTACAAGACCCTCTCTCCTAA
JMSF046F12- GCCCCACCAAGATCGATCTGATGGGGTTGAATCTGTGAATTACAAGACCCTCTCTCCTAA
                      ____________________________________________________________
consensus GCCCCACCAAGATCGATCTGATGGGGTTGAATCTGTGAATTACAAGACCCTCTCTCCTAA
 
. : . : . : . : . : . :
JMFF029O07- GGATTTAGCCAAGTCTGTTATGTCTGAAGGTGGTTGGTCAAACTTGCTGTGCTCAGGGAA
JMSF046F12- GGATTTAGCCAAGTCTGTTATGTCTGAAGGTGGTTGGTCAAACTTGCTGTGCTCAGGGAA
                      ____________________________________________________________
consensus GGATTTAGCCAAGTCTGTTATGTCTGAAGGTGGTTGGTCAAACTTGCTGTGCTCAGGGAA
 
. : . : . : . : . : . :
JMFF029O07- GGGAGCTGAACAGCATCTGGATATTGGGCTTGTTTTTGTCGGAAAAG
JMSF046F12- GGGAGCTGAACAGCATCTGGATATTGGGCTTGTTTTTGTCGGAAAAGAGTTACAATCTAC
                      ____________________________________________________________
consensus GGGAGCTGAACAGCATCTGGATATTGGGCTTGTTTTTGTCGGAAAAGAGTTACAATCTAC
 
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JMSF046F12- AGATCTCTCTAAACCTAGAAAAGCAGACTCTGTACTTGTCAACTTTCTAAAGGACTCTTT
                      ____________________________________________________________
consensus AGATCTCTCTAAACCTAGAAAAGCAGACTCTGTACTTGTCAACTTTCTAAAGGACTCTTT
 
. : . : . : . : . : . :
JMSF046F12- TGTGAACTCCAACTTCTCTCTGGCCTTCCCTTACATTGCCATATCAGAGGAGGGAGAATC
rJMSF046F12+ GGGAGAATC
rJMSF017P16+ GGGAGAATC
rJMFF029O07+ GGGAGAATC
                      ____________________________________________________________
consensus TGTGAACTCCAACTTCTCTCTGGCCTTCCCTTACATTGCCATATCAGAGGAGGGAGAATC
 
. : . : . : . : . : . :
JMSF046F12- ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
rJMSF046F12+ ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
rJMSF017P16+ ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
rJMFF029O07+ ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
                      ____________________________________________________________
consensus ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
 
. : . : . : . : . : . :
JMSF046F12- TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
rJMSF046F12+ TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
rJMSF017P16+ TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
rJMFF029O07+ TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
                      ____________________________________________________________
consensus TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
 
. : . : . : . : . : . :
JMSF046F12- CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAANAAGTCCAAAGGGCACTC
rJMSF046F12+ CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAAGAAGTCCAAAGGGCACTC
rJMSF017P16+ CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAAGAAGTCCAAAGGGCACTC
rJMFF029O07+ CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAAGAAGTCCAAAGGGCACTC
                      ____________________________________________________________
consensus CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAAGAAGTCCAAAGGGCACTC
 
. : . : . : . : . : . :
JMSF046F12- ANATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
rJMSF046F12+ AGATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
rJMSF017P16+ AGATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
rJMFF029O07+ AGATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
                      ____________________________________________________________
consensus AGATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
 
. : . : . : . : . : . :
JMSF046F12- TTCTGA
rJMSF046F12+ TTCTGAGAGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGTA
rJMSF017P16+ TTCTGAGAGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGTA
rJMFF029O07+ TTCTGAGAGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGTA
                      ____________________________________________________________
consensus TTCTGAGAGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGTA
 
. : . : . : . : . : . :
rJMSF046F12+ CACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGCT
rJMSF017P16+ CACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGCT
rJMFF029O07+ CACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGCT
                      ____________________________________________________________
consensus CACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGCT
 
. : . : . : . : . : . :
rJMSF046F12+ AGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATGG
rJMSF017P16+ AGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATGG
rJMFF029O07+ AGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATGG
                      ____________________________________________________________
consensus AGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATGG
 
. : . : . : . : . : . :
rJMSF046F12+ AGTATGCCAACTTAAGTCAACGTTTTTGGATGGAATAATGGTGG
rJMSF017P16+ AGTATGCCAACTTAAGTCAACGTTTTTGGAGGGAATAATGGTGGCAGTTGTTTTACTTAT
rJMFF029O07+ AGTATGCCAACTTAAGTCAACGTTTTTGGAGGGAATAATGGTGGCAGTTGTTTTACTTAT
                      ____________________________________________________________
consensus AGTATGCCAACTTAAGTCAACGTTTTTGGAGGGAATAATGGTGGCAGTTGTTTTACTTAT
 
. : . : . : . : . : . :
rJMSF017P16+ AATCTTGATATCTGGTCTTTGCTGCATGATGGGAATTGACACTCCCACAAGGTTTGAGGC
rJMFF029O07+ AATCTTGATATCTGGTCTTTGCTGCATGATGGGAATTGACACTCCCACAAGGTTTGAGGC
                      ____________________________________________________________
consensus AATCTTGATATCTGGTCTTTGCTGCATGATGGGAATTGACACTCCCACAAGGTTTGAGGC
 
. : . : . : . : . : . :
rJMSF017P16+ TCCTGTGGATTCTTAATCACTCGACTCTGCCATAATACGATTGTATTGGGATGTGCTCTC
rJMFF029O07+ TCCTGTGGATTCTTAATCACTCGACTCTGCCATAATACGATTGTATTGGGATGTGCTCTC
                      ____________________________________________________________
consensus TCCTGTGGATTCTTAATCACTCGACTCTGCCATAATACGATTGTATTGGGATGTGCTCTC
 
. : . : . : . : . : . :
rJMSF017P16+ ATGGTTGTCAAATGTAATGTAGTTTTGTCAGAGCTTTATTTAACCCTGTAATTTTTGTTT
rJMFF029O07+ ATGGTTGTCAAATGTAATGTAGTTTTGTCAGAGCTTTATTTAACCCTGTAATTTTTGTTT
                      ____________________________________________________________
consensus ATGGTTGTCAAATGTAATGTAGTTTTGTCAGAGCTTTATTTAACCCTGTAATTTTTGTTT
 
. : . : . : . : . : . :
rJMSF017P16+ ATTTGAGAAGAGGGCATTAGTTTATGTAC
rJMFF029O07+ ATTTGAGAAGAGGGCATTAGTTTATGTACATGCACTTGCTAAATGGTATGATATTAATAA
                      ____________________________________________________________
consensus ATTTGAGAAGAGGGCATTAGTTTATGTACATGCACTTGCTAAATGGTATGATATTAATAA