| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF029O07 | Sequence | 410 | 005450 (8) | emb|CDP14659.1| | 7e-24 | unnamed protein product [Coffea canephora] | 751 | 005450 (8) | ref|XP_009776091.1| | 244 | PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00 |
| JMSF005P05 | Sequence | 322 | 005450 (8) | 344 | 005508 (3) | ref|XP_004229376.1| | 5e-18 | PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Solanu | |||
| JMSF005P07 | Sequence | 369 | 005450 (8) | ||||||||
| JMSF017P16 | Sequence | 425 | 005450 (8) | ref|XP_009617738.1| | 119 | PREDICTED: uncharacterized protein LOC104110026 [Nicotiana tomentosiformis] | 733 | 005450 (8) | ref|XP_009776091.1| | 249 | PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00 |
| JMSF046F12 | Sequence | 759 | 005450 (8) | ref|XP_009776091.1| | 237 | PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00 | 739 | 005450 (8) | ref|XP_009776091.1| | 242 | PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00 |
This contig is upended
. : . : . : . : . : . :
rJMSF005P07- AC
____________________________________________________________
consensus AC
. : . : . : . : . : . :
rJMSF005P07- GAGGTTATCNATTATTCAATCCCTTGCTAGTGTTGTTTCTCAAATCTATTGCTATTTTCC
____________________________________________________________
consensus GAGGTTATCNATTATTCAATCCCTTGCTAGTGTTGTTTCTCAAATCTATTGCTATTTTCC
. : . : . : . : . : . :
rJMSF005P07- CATTGCCCGTATTCATTGATANATATAGTTTTTGTTTTTCACGCAATTTAAGATCAAATT
____________________________________________________________
consensus CATTGCCCGTATTCATTGATANATATAGTTTTTGTTTTTCACGCAATTTAAGATCAAATT
. : . : . : . : . : . :
rJMSF005P07- TTCGCAAAATCATTCTTTGATCTGTATGCAACTGTGTATTTACTTGCCTGCAGTTTCAAT
JMSF017P16- CAGTTTCAAT
JMFF029O07- CAGTTTCAAT
JMSF046F12- CAGTTTCAAT
____________________________________________________________
consensus TTCGCAAAATCATTCTTTGATCTGTATGCAACTGTGTATTTACTTGCCTGCAGTTTCAAT
. : . : . : . : . : . :
rJMSF005P07- TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
JMSF017P16- TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
JMSF005P05+ ACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
JMFF029O07- TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
JMSF046F12- TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
____________________________________________________________
consensus TAGGGACACGAATCACACGATGAAGGTGGTAGCTGTTGTGCTAGCCACGGTTTTGCTTGT
. : . : . : . : . : . :
rJMSF005P07- CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
JMSF017P16- CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
JMSF005P05+ CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
JMFF029O07- CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
JMSF046F12- CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
____________________________________________________________
consensus CACGGTTCAGTTACCCATGGGGGTTTCCTTTGATCCTGTAGTTCCTTCTTTCCTATGGTC
. : . : . : . : . : . :
rJMSF005P07- GCCCCACCAAGATCG
JMSF017P16- GCCCCACCAAGATCG
JMSF005P05+ GCCCCACCAAGATCG
JMFF029O07- GCCCCACCAAGATCGATCTGATGGGGTTGAATCTGTGAATTACAAGACCCTCTCTCCTAA
JMSF046F12- GCCCCACCAAGATCGATCTGATGGGGTTGAATCTGTGAATTACAAGACCCTCTCTCCTAA
____________________________________________________________
consensus GCCCCACCAAGATCGATCTGATGGGGTTGAATCTGTGAATTACAAGACCCTCTCTCCTAA
. : . : . : . : . : . :
JMFF029O07- GGATTTAGCCAAGTCTGTTATGTCTGAAGGTGGTTGGTCAAACTTGCTGTGCTCAGGGAA
JMSF046F12- GGATTTAGCCAAGTCTGTTATGTCTGAAGGTGGTTGGTCAAACTTGCTGTGCTCAGGGAA
____________________________________________________________
consensus GGATTTAGCCAAGTCTGTTATGTCTGAAGGTGGTTGGTCAAACTTGCTGTGCTCAGGGAA
. : . : . : . : . : . :
JMFF029O07- GGGAGCTGAACAGCATCTGGATATTGGGCTTGTTTTTGTCGGAAAAG
JMSF046F12- GGGAGCTGAACAGCATCTGGATATTGGGCTTGTTTTTGTCGGAAAAGAGTTACAATCTAC
____________________________________________________________
consensus GGGAGCTGAACAGCATCTGGATATTGGGCTTGTTTTTGTCGGAAAAGAGTTACAATCTAC
. : . : . : . : . : . :
JMSF046F12- AGATCTCTCTAAACCTAGAAAAGCAGACTCTGTACTTGTCAACTTTCTAAAGGACTCTTT
____________________________________________________________
consensus AGATCTCTCTAAACCTAGAAAAGCAGACTCTGTACTTGTCAACTTTCTAAAGGACTCTTT
. : . : . : . : . : . :
JMSF046F12- TGTGAACTCCAACTTCTCTCTGGCCTTCCCTTACATTGCCATATCAGAGGAGGGAGAATC
rJMSF046F12+ GGGAGAATC
rJMSF017P16+ GGGAGAATC
rJMFF029O07+ GGGAGAATC
____________________________________________________________
consensus TGTGAACTCCAACTTCTCTCTGGCCTTCCCTTACATTGCCATATCAGAGGAGGGAGAATC
. : . : . : . : . : . :
JMSF046F12- ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
rJMSF046F12+ ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
rJMSF017P16+ ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
rJMFF029O07+ ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
____________________________________________________________
consensus ACTAGAAAGGTCGTTAATTTCAGAGTTCACTATCACATGTGGAGACAATCTTGAAACCAG
. : . : . : . : . : . :
JMSF046F12- TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
rJMSF046F12+ TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
rJMSF017P16+ TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
rJMFF029O07+ TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
____________________________________________________________
consensus TAGAGTGGCTTTCTCAGAGTCATGCTCTGTAGAGGGTGAAAACTTTGAGAAGCTCTCAAA
. : . : . : . : . : . :
JMSF046F12- CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAANAAGTCCAAAGGGCACTC
rJMSF046F12+ CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAAGAAGTCCAAAGGGCACTC
rJMSF017P16+ CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAAGAAGTCCAAAGGGCACTC
rJMFF029O07+ CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAAGAAGTCCAAAGGGCACTC
____________________________________________________________
consensus CATTCCCTCAATTCAGAGCTATTTGGTTTCAAGAATGGAGAAGAAGTCCAAAGGGCACTC
. : . : . : . : . : . :
JMSF046F12- ANATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
rJMSF046F12+ AGATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
rJMSF017P16+ AGATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
rJMFF029O07+ AGATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
____________________________________________________________
consensus AGATCTAATTGTTCTATGTGACTCTGATTCCAATACACTTGCAGGAACAGATAACCATGC
. : . : . : . : . : . :
JMSF046F12- TTCTGA
rJMSF046F12+ TTCTGAGAGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGTA
rJMSF017P16+ TTCTGAGAGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGTA
rJMFF029O07+ TTCTGAGAGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGTA
____________________________________________________________
consensus TTCTGAGAGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGTA
. : . : . : . : . : . :
rJMSF046F12+ CACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGCT
rJMSF017P16+ CACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGCT
rJMFF029O07+ CACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGCT
____________________________________________________________
consensus CACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGCT
. : . : . : . : . : . :
rJMSF046F12+ AGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATGG
rJMSF017P16+ AGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATGG
rJMFF029O07+ AGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATGG
____________________________________________________________
consensus AGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATGG
. : . : . : . : . : . :
rJMSF046F12+ AGTATGCCAACTTAAGTCAACGTTTTTGGATGGAATAATGGTGG
rJMSF017P16+ AGTATGCCAACTTAAGTCAACGTTTTTGGAGGGAATAATGGTGGCAGTTGTTTTACTTAT
rJMFF029O07+ AGTATGCCAACTTAAGTCAACGTTTTTGGAGGGAATAATGGTGGCAGTTGTTTTACTTAT
____________________________________________________________
consensus AGTATGCCAACTTAAGTCAACGTTTTTGGAGGGAATAATGGTGGCAGTTGTTTTACTTAT
. : . : . : . : . : . :
rJMSF017P16+ AATCTTGATATCTGGTCTTTGCTGCATGATGGGAATTGACACTCCCACAAGGTTTGAGGC
rJMFF029O07+ AATCTTGATATCTGGTCTTTGCTGCATGATGGGAATTGACACTCCCACAAGGTTTGAGGC
____________________________________________________________
consensus AATCTTGATATCTGGTCTTTGCTGCATGATGGGAATTGACACTCCCACAAGGTTTGAGGC
. : . : . : . : . : . :
rJMSF017P16+ TCCTGTGGATTCTTAATCACTCGACTCTGCCATAATACGATTGTATTGGGATGTGCTCTC
rJMFF029O07+ TCCTGTGGATTCTTAATCACTCGACTCTGCCATAATACGATTGTATTGGGATGTGCTCTC
____________________________________________________________
consensus TCCTGTGGATTCTTAATCACTCGACTCTGCCATAATACGATTGTATTGGGATGTGCTCTC
. : . : . : . : . : . :
rJMSF017P16+ ATGGTTGTCAAATGTAATGTAGTTTTGTCAGAGCTTTATTTAACCCTGTAATTTTTGTTT
rJMFF029O07+ ATGGTTGTCAAATGTAATGTAGTTTTGTCAGAGCTTTATTTAACCCTGTAATTTTTGTTT
____________________________________________________________
consensus ATGGTTGTCAAATGTAATGTAGTTTTGTCAGAGCTTTATTTAACCCTGTAATTTTTGTTT
. : . : . : . : . : . :
rJMSF017P16+ ATTTGAGAAGAGGGCATTAGTTTATGTAC
rJMFF029O07+ ATTTGAGAAGAGGGCATTAGTTTATGTACATGCACTTGCTAAATGGTATGATATTAATAA
____________________________________________________________
consensus ATTTGAGAAGAGGGCATTAGTTTATGTACATGCACTTGCTAAATGGTATGATATTAATAA