| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028K15 | Sequence | 540 | 005447 (8) | ref|XP_009622651.1| | 1e-14 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Nicotiana tomentosiformis] | 619 | 005447 (8) | ref|XP_002521533.1| | 7e-64 | ring finger protein, putative [Ricinus communis] gb|EEF40804.1| ring finger prot |
| JMFF044B11 | Sequence | 620 | 011868 (7) | ref|XP_006340738.1| | 1e-25 | PREDICTED: calcium-dependent protein kinase 16-like [Solanum tuberosum] | 623 | 005447 (8) | ref|XP_010261280.1| | 7e-65 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Nelumbo nucifera] |
| JMSF017N10 | Sequence | 522 | 000705 (14) | ref|XP_008776364.1| | 1e-40 | PREDICTED: acyl-CoA-binding protein-like [Phoenix dactylifera] | 799 | 005447 (8) | ref|XP_004231468.1| | 1e-84 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Solanum lycopersicum] |
| JMSF020N03 | Sequence | 660 | 005447 (8) | ref|XP_006365590.1| | 3e-37 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Solanum tuberosum] | 755 | 005447 (8) | ref|XP_004231468.1| | 8e-85 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Solanum lycopersicum] |
| JMSF025L23 | Sequence | 642 | 005447 (8) | ref|XP_006365590.1| | 7e-34 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Solanum tuberosum] | 822 | 005447 (8) | ref|XP_004231468.1| | 5e-86 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMFF028K15- CTGAAAACAAAAT
____________________________________________________________
consensus CTGAAAACAAAAT
. : . : . : . : . : . :
JMFF028K15- CTCAAGTACTGCAATACCCTAACACCGCACCGCAGTACTCCACCCACAATCGACTTATAT
JMSF025L23- AGTACTGCAATACCCTAACACCGCACCGCAGTACTCCACCCACAATCGACTTATAT
JMSF020N03- AGTACTGCAATACCCTAACACCGCACCGCAGTACTCCACCCACAATCGACTTATAT
____________________________________________________________
consensus CTCAAGTACTGCAATACCCTAACACCGCACCGCAGTACTCCACCCACAATCGACTTATAT
. : . : . : . : . : . :
JMFF028K15- TGGAATCACTTTCTTCAGACTTCTCATCTGGTTCTATCTTTAATTGTCAAGAAATGGAGA
JMSF025L23- TGGAATCACTTTCTTCAGACTTCTCATCTGGTTCTATCTTTAATTGTCAAGAAATGGAGA
JMSF020N03- TGGAATCACTTTCTTCAGACTTCTCATCTGGTTCTATCTTTAATTGTCAAGAAATGGAGA
____________________________________________________________
consensus TGGAATCACTTTCTTCAGACTTCTCATCTGGTTCTATCTTTAATTGTCAAGAAATGGAGA
. : . : . : . : . : . :
JMFF028K15- ACGCCAAAGCTAATAATGGAACCAACAACGGCGGCGAAGTGGCTAAAACCACCGCCGACG
JMSF025L23- ACGCCAAAGCTAATAATGGAACCAACAACGGCGGCGAAGTGGCTAAAACCACCGCCGACG
JMSF020N03- ACGCCAAAGCTAATAATGGAACCAACAACGGCGGCGAAGTGGCTAAAACCACCGCCGACG
____________________________________________________________
consensus ACGCCAAAGCTAATAATGGAACCAACAACGGCGGCGAAGTGGCTAAAACCACCGCCGACG
. : . : . : . : . : . :
JMFF028K15- ACCACCAGGAAAACCCTATTAATAATTTGCCAACTAATAACACTAGTGCTATACCTGCGC
JMSF025L23- ACCACCAGGAAAACCCTATTAATAATTTGCCAACTAATAACACTAGTGCTATACCTGCGC
JMSF020N03- ACCACCAGGAAAACCCTATTAATAATTTGCCAACTAATAACACTAGTGCTATACCTGCGC
____________________________________________________________
consensus ACCACCAGGAAAACCCTATTAATAATTTGCCAACTAATAACACTAGTGCTATACCTGCGC
. : . : . : . : . : . :
JMFF028K15- CAGTAGCGGAGGAGAGCCGCGAGGGTGAATTTGGTGCTAGTACAAATGTAAATCAAGGCG
JMSF025L23- CAGTAGCGGAGGAGAGCCGCGAGGGTGAATTTGGTGCTAGTACAAATGTAAATCAAGGCG
JMSF020N03- CAGTAGCGGAGGAGAGCCGCGAGGGTGAATTTGGTGCTAGTACAAATGTAAATCAAGGCG
____________________________________________________________
consensus CAGTAGCGGAGGAGAGCCGCGAGGGTGAATTTGGTGCTAGTACAAATGTAAATCAAGGCG
. : . : . : . : . : . :
JMFF028K15- CCCAAGGAGGGCGCCAGCCTTCTAGGAGAACTCCCTTCACCGACCTCAGCCAAATCGATG
JMSF025L23- CCCAAGGAGGGCGCCAGCCTTCTAGGAGAACTCCCTTCACCGACCTCAGCCAAATCGATG
JMSF020N03- CCCAAGGAGGGCGCCAGCCTTCTAGGAGAACTCCCTTCACCGACCTCAGCCAAATCGATG
____________________________________________________________
consensus CCCAAGGAGGGCGCCAGCCTTCTAGGAGAACTCCCTTCACCGACCTCAGCCAAATCGATG
. : . : . : . : . : . :
JMFF028K15- CTGATCTCGCCCTTGCCCGCACCTTACAGGAGCAGGAAAGAGCATATATGATGCTTACAA
JMSF025L23- CTGATCTCGCCCTTGCCCGCACCTTACAGGAGCAGGAAAGAGCATATATGATGCTTACAA
JMSF020N03- CTGACCTCGCCCTTGCCCGCACCTTACAGGAGCAGGAAAGAGCATATATGATGCTTACAA
rJMSF025L23+ CAGGAAAGAGCATATNTGATGCTTACAA
____________________________________________________________
consensus CTGATCTCGCCCTTGCCCGCACCTTACAGGAGCAGGAAAGAGCATATATGATGCTTACAA
. : . : . : . : . : . :
JMFF028K15- TGAATGGTGATGCGAGTGATTATGTCAGTGAAGATGAATATGGATATGATTATGATGATG
JMSF025L23- TGAATGGTGATGCGAGTGATTATGTCAGTGAAGATGAATATGGATATGATTATGATGATG
JMSF020N03- TGAATGGTGATGCGAGTGATTATGTCAGTGAAGATGAATATGGATATGATTATGATGATG
rJMSF025L23+ TGAATGGTGATGCGAGTGATTATGTCAGTGAAGATGAATATGGATATGATTATGATGATG
rJMSF020N03+ AGTGAAGATGAATATGGATATGATTATGATGATG
rJMSF017N10+ GCGAGTGATTATGTCAGTGAAGATGAATATGGATATGATTATGATGATG
____________________________________________________________
consensus TGAATGGTGATGCGAGTGATTATGTCAGTGAAGATGAATATGGATATGATTATGATGATG
. : . : . : . : . : . :
JMFF028K15- ATGATAA-TTTCGATGATCCTAGTGAAGAAGATGGCAGCCATGTAGAT
JMSF025L23- ATGATAA-TTTCGATGATCCTAGTGAAGAAGATGGCAGCCATGTAGATGAGGAGGATGAA
JMSF020N03- ATGATAA-TTTCGATGATCCTAGTGAAGAAGATGGCAGCCATGTAGATGAGGAGGATGAA
rJMSF025L23+ ATGATAA-TTTCGATGATCCTAGTGAAGAAGATGGCAGCCATGTAGATGAGGAGGATGAA
rJMSF020N03+ ATGATAATTTTCGATGATCCTAGTGAAGAAGATGGCAGCCATGTAGATGAGGAGGATGAA
rJMSF017N10+ ATGATAA-TTTCGATGATCCTAGTGAAGAAGATGGCAGCCATGTAGATGAGGAGGATGAA
____________________________________________________________
consensus ATGATAA-TTTCGATGATCCTAGTGAAGAAGATGGCAGCCATGTAGATGAGGAGGATGAA
. : . : . : . : . : . :
JMSF025L23- GATGCCTTTGATGTTCATGCTCATGATGAAGCAAGTGAGGATGAGAACTTAGGTATTGAG
JMSF020N03- GATGCCTTTGATGTTCATGCTCATGATGAAGCAAGTGAGGATGAGAACTTAGGTATTGAG
rJMSF025L23+ GATGCCTTTGATGTTCATGCTCATGATGAAGCAAGTGAGGATGAGAACTTAGGTATTGAG
rJMSF020N03+ GATGCCTTTGATGTTCATGCTCATGATGAAGCAAGTGAGGATGAGAACTTAGGTATTGAG
rJMSF017N10+ GATGCCTTTGATGTTCATGCTCATGATGAAGCAAGTGAGGATGAGAACTTAGGTATTGAG
____________________________________________________________
consensus GATGCCTTTGATGTTCATGCTCATGATGAAGCAAGTGAGGATGAGAACTTAGGTATTGAG
. : . : . : . : . : . :
JMSF025L23- CTGGACCCATCTGCTTTTCCAAGTGATGAGGCTTATGCTAGAGCA
JMSF020N03- CTGGACCCATCTGCTTTTCCAAGTGATGAGGCTTATGCTAGAGCACTACAAGAAGCTGAA
rJMSF025L23+ CTGGACCCATCTGCTTTTCCAAGTGATGAGGCTTATGCTAGAGCACTACAAGAAGCTGAA
rJMSF020N03+ CTGGACCCATCTGCTTTTCCAAGTGATGAGGCTTATGCTAGAGCACTACAAGAAGCTGAA
rJMSF017N10+ CTGGACCCATCTGCTTTTCCAAGTGATGAGGCTTATGCTAGAGCACTACAAGAAGCTGAA
rJMFF044B11+ TGAA
____________________________________________________________
consensus CTGGACCCATCTGCTTTTCCAAGTGATGAGGCTTATGCTAGAGCACTACAAGAAGCTGAA
. : . : . : . : . : . :
JMSF020N03- GAG
rJMSF025L23+ GAGAGGGAAATGGCAGCCAGATTGCTGGCCCTTGCTGGGATAAATGAAGGCCAAGCTCTA
rJMSF020N03+ GAGAGGGAAATGGCAGCCAGATTGCTGGCCCTTGCTGGGATAAATGAAGGCCAAGCTCTA
rJMSF017N10+ GAGAGGGAAATGGCAGCCAGATTGCTGGCCCTTGCTGGGATAAATGAAGGCCAAGCTCTA
rJMFF044B11+ GAGAGGGAAATGGCAGCCAGATTGCTGGCCCTTGCTGGGATAAATGAAGGCCAAGCTCTA
rJMFF028K15+ GATAAATGAAGGCCAAGCTCTA
____________________________________________________________
consensus GAGAGGGAAATGGCAGCCAGATTGCTGGCCCTTGCTGGGATAAATGAAGGCCAAGCTCTA
. : . : . : . : . : . :
rJMSF025L23+ AGTGAAGAAGATCATGGCCAAAATTCCCAGGATGCCTGGGAGGAAGTTGATCCAGATGAA
rJMSF020N03+ AGTGAAGAAGATCATGGCCAAAATTCCCAGGATGCCTGGGAGGAAGTTGATCCAGATGAA
rJMSF017N10+ AGTGAAGAAGATCATGGCCAAAATTCCCAGGATGCCTGGGAGGAAGTTGATCCAGATGAA
rJMFF044B11+ AGTGAAGAAGATCATGGCCAAAATTCCCAGGATGCCTGGGAGGAAGTTGATCCAGATGAA
rJMFF028K15+ AGT-AAGAAGATCATGGCCAAAATTCCCAGGATGCCTGGGAGGAAGTTGATCCAGATGAA
____________________________________________________________
consensus AGTGAAGAAGATCATGGCCAAAATTCCCAGGATGCCTGGGAGGAAGTTGATCCAGATGAA
. : . : . : . : . : . :
rJMSF025L23+ CTCTCTTATGAGGAATTATTAGCGTTGGGTGAAGTAGTTGGAACTGAGAGCAGGGGACTT
rJMSF020N03+ CTCTCTTATGAGGAATTATTAGCGTTGGGTGAAGTAGTTGGAACTGAGAGCAGGGGACTT
rJMSF017N10+ CTCTCTTATGAGGAATTATTAGCGTTGGGTGAAGTAGTTGGAACTGAGAGCAGGGGACTT
rJMFF044B11+ CTCTCTTATGAGGAATTATTAGCGTTGGGTGAAGTAGTTGGAACTGAGAGCAGGGGACTT
rJMFF028K15+ CTCTCTTATGAGGAATTATTAGCGTTGGGTGAAGTAGTTGGAACTGAGAGCAGGGGACTT
____________________________________________________________
consensus CTCTCTTATGAGGAATTATTAGCGTTGGGTGAAGTAGTTGGAACTGAGAGCAGGGGACTT
. : . : . : . : . : . :
rJMSF025L23+ TCTGCAGATACAATTGCCTCTTTACCTTCAATGAACTACAAATCACAAAATACTCAGGAT
rJMSF020N03+ TCTGCAGATACAATTGCCTCTTTACCTTCAATGAACTACAAATCACAAAATACTCAGGAT
rJMSF017N10+ TCTGCAGATACAATTGCCTCTTTACCTTCAATGAACTACAAATCACAAAATACTCAGGAT
rJMFF044B11+ TCTGCAGATACAATTGCCTCTTTACCTTCAATGAACTACAAATCACAAAATACTCAGGAT
rJMFF028K15+ TCTGCAGATACAATTGCCTCTTTACCTTCAATGAACTACAAATCACAAAATACTCAGGAT
____________________________________________________________
consensus TCTGCAGATACAATTGCCTCTTTACCTTCAATGAACTACAAATCACAAAATACTCAGGAT
. : . : . : . : . : . :
rJMSF025L23+ GGAGCAAATGATTCATGTGTCATCTGTAGATTGGATTATGAAGATGGCGAGACCTTGACC
rJMSF020N03+ GGAGCAAATGATTCATGTGTCATCTGTAGATTGGATTATGAAGATGGCGAGACCTTGACC
rJMSF017N10+ GGAGCAAATGATTCATGTGTCATCTGTAGATTGGATTATGAAGATGGCGAGACCTTGACC
rJMFF044B11+ GGAGCAAATGATTCATGTGTCATCTGTAGATTGGATTATGAAGATGGCGAGACCTTGACC
rJMFF028K15+ GGAGCAAATGATTCATGTGTCATCTGTAGATTGGATTATGAAGATGGCGAGACCTTGACC
____________________________________________________________
consensus GGAGCAAATGATTCATGTGTCATCTGTAGATTGGATTATGAAGATGGCGAGACCTTGACC
. : . : . : . : . : . :
rJMSF025L23+ GTGCTTTCCTGCAAACATTCTTACCATTCTGAATGTATAAATAACTGGCTAAGAATAAAC
rJMSF020N03+ GTGCTTTCCTGCAAACATTCTTACCATTCTGAATGTATAAATAACTGGCTAAGAATAAAC
rJMSF017N10+ GTGCTTTCCTGCAAACATTCTTACCATTCTGAATGTATAAATAACTGGCTAAGAATAAAC
rJMFF044B11+ GTGCTTTCCTGCAAACATTCTTACCATTCTGAATGTATAAATAACTGGCTAAGAATAAAC
rJMFF028K15+ GTGCTTTCCTGCAAACATTCTTACCATTCTGAATGTATAAATAACTGGCTAAGAATAAAC
____________________________________________________________
consensus GTGCTTTCCTGCAAACATTCTTACCATTCTGAATGTATAAATAACTGGCTAAGAATAAAC
. : . : . : . : . : . :
rJMSF025L23+ AAGGTGTGTCCTGTCTGTAGTGCTGAAGTCTCCACTTCTGGTAACAGTTAGCAGATATAG
rJMSF020N03+ AAGGTGTGTCCTGTCTGTAGTGCTGAAGTCTCCACTTCTGGTAACAGTTAGCAGATATAG
rJMSF017N10+ AAGGTGTGTCCTGTCTGTAGTGCTGAAGTCTCCACTTCTGGTAACAGTTAGCAGATATAG
rJMFF044B11+ AAGGTGTGTCCTGTCTGTAGTGCTGAAGTCTCCACTTCTGGTAACAGTTAGCAGATATAG
rJMFF028K15+ AAGGTGTGTCCTGTCTGTAGTGCTGAAGTCTCCACTTCTGGTAACAGTTAGCAGATATAG
____________________________________________________________
consensus AAGGTGTGTCCTGTCTGTAGTGCTGAAGTCTCCACTTCTGGTAACAGTTAGCAGATATAG
. : . : . : . : . : . :
rJMSF025L23+ ATAGTGAATGCCCCTGAGGCTGAGGGAGGAGGATGCAGGATTTCTTAGGAATCAAGCATG
rJMSF020N03+ ATAGTGAATGCCCCTGAGGCTGAGGGAGGAGGATGCAGGATTTCTTAGGAATCAAGCATG
rJMSF017N10+ ATAGTGAATGCCCCTGAGGCTGAGGGAGGAGGATGCAGGATTTCTTAGGAATCAAGCATG
rJMFF044B11+ ATAGTGAATGCCCCTGAGGCTGAGGGAGGAGGATGCAGGATTTCTTAGGAATCAAGCATG
rJMFF028K15+ ATAGTGAATGCCTCTGAGGCTGAGGGAGGAGGATGCAGGATTTCTTAGGAATCAAGCATG
____________________________________________________________
consensus ATAGTGAATGCCCCTGAGGCTGAGGGAGGAGGATGCAGGATTTCTTAGGAATCAAGCATG
. : . : . : . : . : . :
rJMSF025L23+ AAACACCAATCCTGTATGCCAATGTCTTTGGTTCCTACCCAAAAA
rJMSF020N03+ AAACACCAATCCTGTATGCCAATGTCTTTGGTTCCTACCCAAAAAC
rJMSF017N10+ AAACACCAATCCTGTATGCCAATGTCTTTGGTTCCTACCCAAAAAGCAGTGTCTGCTCAA
rJMFF044B11+ AAACACCAATCCTGTATGCCAATGTCTTTGGTTCCTACCCAAAAA-CAGTGTCTGCTCAA
rJMFF028K15+ AAACACCAATCCTGTATGCCAATGTCTTTGGTTCCTACCCAAAAA-CAGTGTCTGCTCAA
____________________________________________________________
consensus AAACACCAATCCTGTATGCCAATGTCTTTGGTTCCTACCCAAAAA-CAGTGTCTGCTCAA
. : . : . : . : . : . :
rJMSF017N10+ CCATTGTGCCATTATTTTATATACTATCACA
rJMFF044B11+ -CATTGTGCCATTATTTTATATACTATCACATATAACTTGAGAATTTTAGTGGTTTTATA
rJMFF028K15+ -CATTGTGCCATTATTTTATATACTATCACATATAACTTGAGAATTTTAGTGGTTTTATA
____________________________________________________________
consensus -CATTGTGCCATTATTTTATATACTATCACATATAACTTGAGAATTTTAGTGGTTTTATA
. : . : . : . : . : . :
rJMFF044B11+ TTGGTCGCTATACTTTGTCAT
rJMFF028K15+ TTGGTCGCTATACTTTGTCATAATTCCTTTTCGGGTGGAAGTCTGCCTTTACATTCACAA
____________________________________________________________
consensus TTGGTCGCTATACTTTGTCATAATTCCTTTTCGGGTGGAAGTCTGCCTTTACATTCACAA