Contig 005440:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027N23Sequence532005440 (2)705005440 (2)ref|XP_009596776.1|7e-91PREDICTED: transcription factor bHLH93-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF027N23-                                GACAGAGAGATGGAGCTGAGCCCACCTGGTTTGTACAGT
                      ____________________________________________________________
consensus                                  GACAGAGAGATGGAGCTGAGCCCACCTGGTTTGTACAGT
 
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JMFF027N23-           TTAGAGGAGTTGGTTGGAGCTCCAAGAAGAGAGAATTGGAGCACAACAACGCTCTTCACT
                      ____________________________________________________________
consensus             TTAGAGGAGTTGGTTGGAGCTCCAAGAAGAGAGAATTGGAGCACAACAACGCTCTTCACT
 
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JMFF027N23-           TCACCAGACACCTTCTTCTCAAACGCCTGGTCCAATGGCTTCGATGAATCCTTGGATCCT
                      ____________________________________________________________
consensus             TCACCAGACACCTTCTTCTCAAACGCCTGGTCCAATGGCTTCGATGAATCCTTGGATCCT
 
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JMFF027N23-           CCAGATTTTGTGTCCTCTTCTTCTTCTTCGCTACTCGACCTCCTCACTCTCCCCCAAGAA
                      ____________________________________________________________
consensus             CCAGATTTTGTGTCCTCTTCTTCTTCTTCGCTACTCGACCTCCTCACTCTCCCCCAAGAA
 
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JMFF027N23-           CCCACCACCTTTGCATGCCCAGACCTTCAGATCCAGCATGGCTGCGGCTTCGCTAATTGC
                      ____________________________________________________________
consensus             CCCACCACCTTTGCATGCCCAGACCTTCAGATCCAGCATGGCTGCGGCTTCGCTAATTGC
 
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JMFF027N23-           TGCGCCGCCGCCGCAGGAGGAGTACGGCGGCGGCGGCGGCGGAGGAGGAGTTTTCGGGGG
                      ____________________________________________________________
consensus             TGCGCCGCCGCCGCAGGAGGAGTACGGCGGCGGCGGCGGCGGAGGAGGAGTTTTCGGGGG
 
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JMFF027N23-           GATTAATAATCTGCAGGAGAGTGATGAGTTTAGTGGGTTGATGAGAAGCTGCGGTTGTGC
                      ____________________________________________________________
consensus             GATTAATAATCTGCAGGAGAGTGATGAGTTTAGTGGGTTGATGAGAAGCTGCGGTTGTGC
 
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JMFF027N23-           ACAAGTGAAGATGGGGCAGCTGGGTAACAATGGCGGCGGCGGCGGCGGCGGGGGGTTAAT
rJMFF027N23+                         GCAGCTGGGTAACAATGGCGGCGGCGGCGGCGGCGGGGGGTTAAT
                      ____________________________________________________________
consensus             ACAAGTGAAGATGGGGCAGCTGGGTAACAATGGCGGCGGCGGCGGCGGCGGGGGGTTAAT
 
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JMFF027N23-           GGCCGGAGAAATAAAGAAGAGTAAATCCAAGAAAGTTGAAGGGCAGCCTTCCAAGAATCT
rJMFF027N23+          GNCCGGAGAAATAAAGAAGAGTAAATCCAAGAAAGTTGAAGGGCAGCCTTCCAAGAATCT
                      ____________________________________________________________
consensus             GGCCGGAGAAATAAAGAAGAGTAAATCCAAGAAAGTTGAAGGGCAGCCTTCCAAGAATCT
 
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JMFF027N23-           AATGGCGGAAAGG                                               
rJMFF027N23+          AATGGCGGAAAGGCGGAGGAGGAAACGCCTTAACGACCGCCTCTCCATGCTCAGATCAAT
                      ____________________________________________________________
consensus             AATGGCGGAAAGGCGGAGGAGGAAACGCCTTAACGACCGCCTCTCCATGCTCAGATCAAT
 
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rJMFF027N23+          CGTTCCCAAGATTAGCAAGATGGATAGAACCTCCATTCTTGGAGACACCATTGATTACAT
                      ____________________________________________________________
consensus             CGTTCCCAAGATTAGCAAGATGGATAGAACCTCCATTCTTGGAGACACCATTGATTACAT
 
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rJMFF027N23+          GAAAGAGCTGTTAGAGAAAATCCATCAACTGCGTGAAGATACCTTGGAAGAAGACGACAA
                      ____________________________________________________________
consensus             GAAAGAGCTGTTAGAGAAAATCCATCAACTGCGTGAAGATACCTTGGAAGAAGACGACAA
 
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rJMFF027N23+          AAACCACATCAAATCCCTCGCACCAAACACCAGCAGGGAACTCAAGTCTAATGAAGCAAT
                      ____________________________________________________________
consensus             AAACCACATCAAATCCCTCGCACCAAACACCAGCAGGGAACTCAAGTCTAATGAAGCAAT
 
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rJMFF027N23+          TGTAAGAAATCCTCCAAAGTTTGATGTAGAAAGGAGAAACGTGGACACTAGAATCGAGAT
                      ____________________________________________________________
consensus             TGTAAGAAATCCTCCAAAGTTTGATGTAGAAAGGAGAAACGTGGACACTAGAATCGAGAT
 
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rJMFF027N23+          ATGCTGCGCAACAAAACCTGGTTTGTTGTTGTCAACTGTGAGTACAATAGAAGCTCTGGG
                      ____________________________________________________________
consensus             ATGCTGCGCAACAAAACCTGGTTTGTTGTTGTCAACTGTGAGTACAATAGAAGCTCTGGG
 
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rJMFF027N23+          TCTTGACATTCATCAATGCGTTATCAGCTGCTTCAATGACTTNTCCTTCCAAGCCACATG
                      ____________________________________________________________
consensus             TCTTGACATTCATCAATGCGTTATCAGCTGCTTCAATGACTTNTCCTTCCAAGCCACATG
 
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rJMFF027N23+          CGCAGAGGCGACGGATCACAGAACGGTTCTGAGCCAGGAAGACGTAAAACAAGCGCTATT
                      ____________________________________________________________
consensus             CGCAGAGGCGACGGATCACAGAACGGTTCTGAGCCAGGAAGACGTAAAACAAGCGCTATT
 
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rJMFF027N23+          CAAGACAGCCGGCTATGGAGGAAGGTGTCTGTAGGAATAGAATAATATTATTGTCTGGGG
                      ____________________________________________________________
consensus             CAAGACAGCCGGCTATGGAGGAAGGTGTCTGTAGGAATAGAATAATATTATTGTCTGGGG
 
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rJMFF027N23+          AATAAATTTAGTAGTATTCCCACTTTTTAAGCGGACATACATGTCTCTTATTCACAACAA
                      ____________________________________________________________
consensus             AATAAATTTAGTAGTATTCCCACTTTTTAAGCGGACATACATGTCTCTTATTCACAACAA