| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014F07 | Sequence | 606 | 012854 (3) | emb|CDP07547.1| | 3e-55 | unnamed protein product [Coffea canephora] | 747 | 005435 (3) | ref|XP_002510353.1| | 2e-139 | conserved hypothetical protein [Ricinus communis] gb|EEF52540.1| conserved hypot |
| JMFF027H11 | Sequence | 201 | 012854 (3) | ref|XP_009805014.1| | 4e-16 | PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Nicotia | 756 | 005435 (3) | ref|XP_002510353.1| | 3e-92 | conserved hypothetical protein [Ricinus communis] gb|EEF52540.1| conserved hypot |
| JMSF011I21 | Sequence | 281 | 012854 (3) | ref|XP_009612192.1| | 5e-30 | PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Nicotia | 767 | 005435 (3) | ref|XP_002510353.1| | 5e-129 | conserved hypothetical protein [Ricinus communis] gb|EEF52540.1| conserved hypot |
This contig is upended
. : . : . : . : . : . :
rJMFF014F07+ GGTAACCATGCTGTGTCTGGATTGAAGTTCCGAATCTTGCGAGAGTTTTTG
rJMSF011I21+ GCGAGAGTTTTTG
____________________________________________________________
consensus GGTAACCATGCTGTGTCTGGATTGAAGTTCCGAATCTTGCGAGAGTTTTTG
. : . : . : . : . : . :
rJMFF014F07+ CAGCTTGGGTATAGTGTCCTCCTTTCAGACGTTGACATTGTCTATTTACAGAATCCCTTT
rJMSF011I21+ CAGCTNGGGTATAGTGTCCTCCTTTCAGACGTTGACATNGTCTATTTACAGAATCCCTTT
rJMFF027H11+ TTCAGACGTTGACATTGTCTATTTACAGAATCCCTTT
____________________________________________________________
consensus CAGCTTGGGTATAGTGTCCTCCTTTCAGACGTTGACATTGTCTATTTACAGAATCCCTTT
. : . : . : . : . : . :
rJMFF014F07+ GATCATTTATATCGGGATTCGGGTGTGGAGTCCATGAGTGATGGCCACAATAATATGACA
rJMSF011I21+ GATCATTTATATCGGGATTCGGATGTGGAGTCCATGAGTGATGGCCACAATAATATGACA
rJMFF027H11+ GATCATTTATATCGGGATTCGGATGTGGAGTCCATGAGTGATGGCCACAATAATATGACA
____________________________________________________________
consensus GATCATTTATATCGGGATTCGGATGTGGAGTCCATGAGTGATGGCCACAATAATATGACA
. : . : . : . : . : . :
rJMFF014F07+ GCTTATGGATACAATGATGTCTTTGATGAACCTGCAATGGGTTGGGCCCGCTACGCT-CA
rJMSF011I21+ GCTTATGGATACAATGATGTCTTTGATGAACCTGCAATGGGTTGGGCCCGCTACGCT-CA
rJMFF027H11+ GCTTATGGATACAATGATGTCTTTGATGAACCTGCAATGGGTTGGGCCCGCTACGCTCCA
____________________________________________________________
consensus GCTTATGGATACAATGATGTCTTTGATGAACCTGCAATGGGTTGGGCCCGCTACGCT-CA
. : . : . : . : . : . :
rJMFF014F07+ TACAATGCGGATATGGGTTTATAATTCCGGTTTCTTTTATATAAGGTCAACGATTCCTTC
rJMSF011I21+ TACAATGCGGATATGGGTTTATAATTCCGGTTTCTTTTATATAAGGTCAACGATTCCTTC
rJMFF027H11+ TACAATGCGGATATGGGTTTATAATTCCGGTTTCTTTTATATAAGGTCAACGATTCCTTC
____________________________________________________________
consensus TACAATGCGGATATGGGTTTATAATTCCGGTTTCTTTTATATAAGGTCAACGATTCCTTC
. : . : . : . : . : . :
rJMFF014F07+ AATTGAACTCTTGGATCGAGTTGCTGACAGGCTTGCTCGGCAGCCAAACTCCTGGGACCA
rJMSF011I21+ AATTGAACTCTTGGATCGAGTTGCTGACAGGCTTGCTCGGCAGCCAAACTCCTGGGACCA
rJMFF027H11+ AATTGAACTCTTGGATCGAGTTGCTGACAGGCTTGCTCGGCAGCCAAACTCCTGGGACCA
____________________________________________________________
consensus AATTGAACTCTTGGATCGAGTTGCTGACAGGCTTGCTCGGCAGCCAAACTCCTGGGACCA
. : . : . : . : . : . :
rJMFF014F07+ GGCAGTTTTTAACGAAGAACTCTACTACCCATCACATCCTGGTTACATCGGACTTCATGC
rJMSF011I21+ GGCAGTTTTTAACGAAGAACTCTACTACCCATCACATCCTGGTTACATCGGACTTCATGC
rJMFF027H11+ GGCAGTTTTTAACGAAGAACTCTACTACCCATCACATCCTGGTTACATCGGACTTCATGC
____________________________________________________________
consensus GGCAGTTTTTAACGAAGAACTCTACTACCCATCACATCCTGGTTACATCGGACTTCATGC
. : . : . : . : . : . :
rJMFF014F07+ TTCTAGGAGAACCATGGATATATACCTCTTTATGAATAGCAAGGTCTTGTTCAAGACTGT
rJMSF011I21+ TTCTAGGAGAACCATGGATATATACCTCTTTATGAATAGCAAGGTCTTGTTCAAGACTGT
rJMFF027H11+ TTCTAGGAGAACCATGGATATATACCTCTTTATGAATAGCAAGGTCTTGTTCAAGACTGT
____________________________________________________________
consensus TTCTAGGAGAACCATGGATATATACCTCTTTATGAATAGCAAGGTCTTGTTCAAGACTGT
. : . : . : . : . : . :
rJMFF014F07+ GAGAAAAGATACTAATCTCAAAAAGCTGAAGCCGGTTATAGTTCACGTAAATTACCACCC
rJMSF011I21+ GAGAAAAGATACTAATCTCAAAAAGCTGAAGCCGGTTATAGTTCACGTAAATTACCACCC
rJMFF027H11+ GAGAAAAGATACTAATCTCAAAAAGCTGAAGCCGGTTATAGTTCACGTAAATTACCACCC
____________________________________________________________
consensus GAGAAAAGATACTAATCTCAAAAAGCTGAAGCCGGTTATAGTTCACGTAAATTACCACCC
. : . : . : . : . : . :
rJMFF014F07+ GGATAAACTTCCTAGAATGCAAGCAGTCGTCGAGTTCTACGTTGATGGGAAGCAAAACGC
rJMSF011I21+ GGATAAACTTCCTAGAATGCAAGCAGTCGTCGAGTTCTACGTTGATGGGAAGCAAAACGC
rJMFF027H11+ GGATAAACTTCCTAGAATGCAAGCAGTCGTCGAGTTCTACGTTGATGGGAAGCAAAACGC
____________________________________________________________
consensus GGATAAACTTCCTAGAATGCAAGCAGTCGTCGAGTTCTACGTTGATGGGAAGCAAAACGC
. : . : . : . : . : . :
rJMFF014F07+ TCTCGATTCATTCCCCGACGGTTCTGAATGGTAAAATGATGGAGCTTTTGCTGATTTTTC
rJMSF011I21+ TCTCGATTCATTCCCCGACGGTTCTGAATGGTAAAATGATGGAGCTTTTGCTGATTTTTC
rJMFF027H11+ TCTCGATTCATTCCCCGACGGTTCTGAATGGTAAAATGATGGAGCTTTTGCTGATTTTTC
____________________________________________________________
consensus TCTCGATTCATTCCCCGACGGTTCTGAATGGTAAAATGATGGAGCTTTTGCTGATTTTTC
. : . : . : . : . : . :
rJMFF014F07+ CCAGACAAGTTTTCTTTTATTTGCCAATTCTCTCTTCATAAAGATAGCTTGCACGAGTGT
rJMSF011I21+ CCAGACAAGTTTTCTTTTATTTGCCAATTCTCTCTTCATAAAGATAGCTTGCACGAGTGT
rJMFF027H11+ CCAGACAAGTTTTCTTTTATTTGCCAATTCTCTCTTCATAAAGATAGCTTGCACGAGTGT
____________________________________________________________
consensus CCAGACAAGTTTTCTTTTATTTGCCAATTCTCTCTTCATAAAGATAGCTTGCACGAGTGT
. : . : . : . : . : . :
rJMFF014F07+ CTTTCTGTGCTCATGTGTATTATTGACTTTCCCTACA
rJMSF011I21+ CTTTCTGTGCTCATGTGTATTATTGACTTTCCCTACATTAATCTATATTTTGCTTCTATG
rJMFF027H11+ CTTTCTGTGCTCATGTGTATTATTGACTTTCCCTACATTAATCTATATTTTGCTTCTATG
____________________________________________________________
consensus CTTTCTGTGCTCATGTGTATTATTGACTTTCCCTACATTAATCTATATTTTGCTTCTATG
. : . : . : . : . : . :
rJMSF011I21+ TCCAAATTGTCTCCCTTGTAACTTGTAAGAGTACA
rJMFF027H11+ TCCAAATTGTCT-CCTTGTAACTTGTAAGAGTACATTTTAGTTTAATACAGATAGAACAG
____________________________________________________________
consensus TCCAAATTGTCTCCCTTGTAACTTGTAAGAGTACATTTTAGTTTAATACAGATAGAACAG