Contig 005427:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021H09Sequence416013239 (4)ref|XP_006363261.1|3e-45PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isof384005427 (2)
JMFF025P03Sequence514013239 (4)ref|XP_006363261.1|3e-44PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isof554005427 (2)emb|CDP13389.1|1e-26unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF025P03+                                                        AAGGTTTTCGGTAC
                      ____________________________________________________________
consensus                                                           AAGGTTTTCGGTAC
 
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rJMFF025P03+          CAAGGAAGCNTTNGAGGAGGGCGTAAGAGCTATTGCTGAGGGAATAGCAGCAAAGTCTCC
                      ____________________________________________________________
consensus             CAAGGAAGCNTTNGAGGAGGGCGTAAGAGCTATTGCTGAGGGAATAGCAGCAAAGTCTCC
 
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rJMFF025P03+          CNTAGCTGTGATTGGAACAAAAGCCGTGTTGTTGAACACTNGAGATTTGNCAGTGGAGCA
                      ____________________________________________________________
consensus             CNTAGCTGTGATTGGAACAAAAGCCGTGTTGTTGAACACTNGAGATTTGNCAGTGGAGCA
 
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rJMFF021H09+                                            GTCCTTCCATCCGATGATTTGAAAGA
rJMFF025P03+          AGGTTTAGANTACGTCGCNACATGGAACTNTGNTGTCCTTCCATCCGATGATTTGAAAGA
                      ____________________________________________________________
consensus             AGGTTTAGANTACGTCGCNACATGGAACTNTGNTGTCCTTCCATCCGATGATTTGAAAGA
 
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rJMFF021H09+          GGCAGTCTCNGNTCAAAGAGAGAAGAGANANCCGGTTTTTGCAAANCTATAGAGTNNGNC
rJMFF025P03+          GGCAGTCTCNGNTCAAAGAGAGAAGAGAAANCCGGTTTTTGCAAANCTATAGAGTTTGNC
                      ____________________________________________________________
consensus             GGCAGTCTCNGNTCAAAGAGAGAAGAGAAANCCGGTTTTTGCAAANCTATAGAGTTTGNC
 
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rJMFF021H09+          TGAAGGCTATACGCCCAGAAAAAGGATTGCACCCTAATTNTNNCGCCAAACCGCCCTTNC
rJMFF025P03+          TGAAGGCTATACGCCCAGAAAAAGGATTGCNCCCTAATTNTNNCGCCAAACCGCCCTTNC
                      ____________________________________________________________
consensus             TGAAGGCTATACGCCCAGAAAAAGGATTGCACCCTAATTNTNNCGCCAAACCGCCCTTNC
 
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rJMFF021H09+          CNTGGTGCTTGGCGGGTTTGTGTGCAGAGAAGAACGTTCAAGGATGGTGGGCATTNTGCA
rJMFF025P03+          CNTGNTGCTTGGCGGGTTTGTGTGCAGAGAAGAACGTTCAAGGATGGTGGGCATTNTGCA
                      ____________________________________________________________
consensus             CNTGGTGCTTGGCGGGTTTGTGTGCAGAGAAGAACGTTCAAGGATGGTGGGCATTNTGCA
 
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rJMFF021H09+          AGNCATGAATGAATGTCTATCNTAGGATNGACAGATTGGACAACTGTGTAAAATTCTTAG
rJMFF025P03+          AGNCATGAATGAATGTCTATCNTAGGATTGACAGATTGGACAACTGTGTAAAATTNTTAG
                      ____________________________________________________________
consensus             AGNCATGAATGAATGTCTATCNTAGGATTGACAGATTGGACAACTGTGTAAAATTCTTAG
 
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rJMFF021H09+          TTTCATACTTATCCTTNGTAGCATCAAATGCCAGGTNTACAATNGAATAATGGATATTTC
rJMFF025P03+          TTTCATACTTATCCTTNGTAGCATCAAATGCCAGGTNTACAATNGAATAATGGATATTTC
                      ____________________________________________________________
consensus             TTTCATACTTATCCTTNGTAGCATCAAATGCCAGGTNTACAATNGAATAATGGATATTTC
 
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rJMFF021H09+          NTACTTAAATGAGACATGNAATTTCTTATGTTAGCTGAAATATNGTCATTCATACAAA  
rJMFF025P03+          CTACTTAAATGAGACATGNAATTTCTTATGTTAGCTGAAATATNGTCATTCATACAAAAA
                      ____________________________________________________________
consensus             CTACTTAAATGAGACATGNAATTTCTTATGTTAGCTGAAATATNGTCATTCATACAAAAA