Contig 005425:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010C02Sequence568004485 (6)emb|CBI18223.3|5e-72unnamed protein product [Vitis vinifera]776005425 (6)emb|CDO97512.1|5e-140unnamed protein product [Coffea canephora]
JMFF025F16Sequence537004485 (6)emb|CBI18223.3|4e-76unnamed protein product [Vitis vinifera]832005425 (6)emb|CDO97512.1|4e-151unnamed protein product [Coffea canephora]
JMFF033F15Sequence598004485 (6)emb|CBI18223.3|5e-82unnamed protein product [Vitis vinifera]775005425 (6)ref|XP_009786904.1|2e-141PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris]
JMFF041G20Sequence629004485 (6)ref|XP_009786904.1|2e-101PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris]579005425 (6)ref|XP_010912010.1|2e-97PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis]
JMSF013F22Sequence215004485 (6)emb|CDY03839.1|8e-27BnaC01g29560D [Brassica napus]760005425 (6)emb|CDO97512.1|8e-141unnamed protein product [Coffea canephora]
JMSF017C17Sequence462004485 (6)ref|XP_010087922.1|3e-5760S ribosomal protein L3 [Morus notabilis] gb|EXB30757.1| 60S ribosomal protein 773005425 (6)emb|CDO97512.1|4e-135unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF010C02+ TCCAGGTT
rJMFF033F15+ GGAGATCCAGGTT
rJMSF013F22+ ATCCAGGTT
rJMSF017C17+ TGATGGAGATCCAGGTT
rJMFF025F16+ GAAAATGAAGGGGCTGAAGCAGAAGAAGGCTCATTTGATGGAGATCCAGGTT
                      ____________________________________________________________
consensus GAAAATGAAGGGGCTGAAGCAGAAGAAGGCTCATTTGATGGAGATCCAGGTT
 
. : . : . : . : . : . :
rJMFF010C02+ AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
rJMFF033F15+ AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
rJMSF013F22+ AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
rJMSF017C17+ AATGGTGGGACAA-TGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
rJMFF025F16+ AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
                      ____________________________________________________________
consensus AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
 
. : . : . : . : . : . :
rJMFF010C02+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
rJMFF033F15+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
rJMSF013F22+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
rJMSF017C17+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
rJMFF025F16+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
                      ____________________________________________________________
consensus CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
 
. : . : . : . : . : . :
rJMFF010C02+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
rJMFF033F15+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
rJMFF041G20+ TCCACGTAAAACTCAT
rJMSF013F22+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
rJMSF017C17+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
rJMFF025F16+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
                      ____________________________________________________________
consensus AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
 
. : . : . : . : . : . :
rJMFF010C02+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMFF033F15+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMFF041G20+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMSF013F22+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMSF017C17+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMFF025F16+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
                      ____________________________________________________________
consensus AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
 
. : . : . : . : . : . :
rJMFF010C02+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMFF033F15+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMFF041G20+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMSF013F22+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMSF017C17+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMFF025F16+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
                      ____________________________________________________________
consensus GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
 
. : . : . : . : . : . :
rJMFF010C02+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMFF033F15+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMFF041G20+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMSF013F22+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMSF017C17+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMFF025F16+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
                      ____________________________________________________________
consensus AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
 
. : . : . : . : . : . :
rJMFF010C02+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMFF033F15+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMFF041G20+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMSF013F22+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMSF017C17+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMFF025F16+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
                      ____________________________________________________________
consensus AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
 
. : . : . : . : . : . :
rJMFF010C02+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMFF033F15+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMFF041G20+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMSF013F22+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMSF017C17+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMFF025F16+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
                      ____________________________________________________________
consensus TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
 
. : . : . : . : . : . :
rJMFF010C02+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMFF033F15+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMFF041G20+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMSF013F22+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMSF017C17+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMFF025F16+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
                      ____________________________________________________________
consensus CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
 
. : . : . : . : . : . :
rJMFF010C02+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMFF033F15+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMFF041G20+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMSF013F22+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMSF017C17+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMFF025F16+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
                      ____________________________________________________________
consensus TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
 
. : . : . : . : . : . :
rJMFF010C02+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMFF033F15+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMFF041G20+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMSF013F22+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMSF017C17+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMFF025F16+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
                      ____________________________________________________________
consensus CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
 
. : . : . : . : . : . :
rJMFF010C02+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMFF033F15+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMFF041G20+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMSF013F22+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMSF017C17+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMFF025F16+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
                      ____________________________________________________________
consensus AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
 
. : . : . : . : . : . :
rJMFF010C02+ GAATTTATCTTTTATTGATTCTTAGAGGATATTTGTTTCCAT
rJMFF033F15+ GAATTTATCTTTTATTGATTCTTAGAGGATATT
rJMFF041G20+ GAATTTATCTTTTATTGATTCTT
rJMSF013F22+ GAATTTATCTTTTATTGATTCTTAGAGGATA
rJMSF017C17+ GAATTTATCTTTTATTGATTCTTAGAGGATATT
rJMFF025F16+ GAATTTATCTTTTATTGATTCTTAGAGGATATTTGTTTCCATTTCAATACTAATACAAGT
                      ____________________________________________________________
consensus GAATTTATCTTTTATTGATTCTTAGAGGATATTTGTTTCCATTTCAATACTAATACAAGT