| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010C02 | Sequence | 568 | 004485 (6) | emb|CBI18223.3| | 5e-72 | unnamed protein product [Vitis vinifera] | 776 | 005425 (6) | emb|CDO97512.1| | 5e-140 | unnamed protein product [Coffea canephora] |
| JMFF025F16 | Sequence | 537 | 004485 (6) | emb|CBI18223.3| | 4e-76 | unnamed protein product [Vitis vinifera] | 832 | 005425 (6) | emb|CDO97512.1| | 4e-151 | unnamed protein product [Coffea canephora] |
| JMFF033F15 | Sequence | 598 | 004485 (6) | emb|CBI18223.3| | 5e-82 | unnamed protein product [Vitis vinifera] | 775 | 005425 (6) | ref|XP_009786904.1| | 2e-141 | PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris] |
| JMFF041G20 | Sequence | 629 | 004485 (6) | ref|XP_009786904.1| | 2e-101 | PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris] | 579 | 005425 (6) | ref|XP_010912010.1| | 2e-97 | PREDICTED: 60S ribosomal protein L3-like isoform X2 [Elaeis guineensis] |
| JMSF013F22 | Sequence | 215 | 004485 (6) | emb|CDY03839.1| | 8e-27 | BnaC01g29560D [Brassica napus] | 760 | 005425 (6) | emb|CDO97512.1| | 8e-141 | unnamed protein product [Coffea canephora] |
| JMSF017C17 | Sequence | 462 | 004485 (6) | ref|XP_010087922.1| | 3e-57 | 60S ribosomal protein L3 [Morus notabilis] gb|EXB30757.1| 60S ribosomal protein | 773 | 005425 (6) | emb|CDO97512.1| | 4e-135 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF010C02+ TCCAGGTT
rJMFF033F15+ GGAGATCCAGGTT
rJMSF013F22+ ATCCAGGTT
rJMSF017C17+ TGATGGAGATCCAGGTT
rJMFF025F16+ GAAAATGAAGGGGCTGAAGCAGAAGAAGGCTCATTTGATGGAGATCCAGGTT
____________________________________________________________
consensus GAAAATGAAGGGGCTGAAGCAGAAGAAGGCTCATTTGATGGAGATCCAGGTT
. : . : . : . : . : . :
rJMFF010C02+ AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
rJMFF033F15+ AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
rJMSF013F22+ AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
rJMSF017C17+ AATGGTGGGACAA-TGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
rJMFF025F16+ AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
____________________________________________________________
consensus AATGGTGGGACAATTGCACAGAAGGTTGACTATGCATATGGTTTCTTTGAGAAGCATGTG
. : . : . : . : . : . :
rJMFF010C02+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
rJMFF033F15+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
rJMSF013F22+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
rJMSF017C17+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
rJMFF025F16+ CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
____________________________________________________________
consensus CCAGTCGATGCTGTTTTCCAGAAGGATGAGATGATTGATATCATTGGTGTCACCAAGGGT
. : . : . : . : . : . :
rJMFF010C02+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
rJMFF033F15+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
rJMFF041G20+ TCCACGTAAAACTCAT
rJMSF013F22+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
rJMSF017C17+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
rJMFF025F16+ AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
____________________________________________________________
consensus AAGGGTTATGAAGGTGTTGTGACTCGATGGGGTGTCACTCGTCTTCCACGTAAAACTCAT
. : . : . : . : . : . :
rJMFF010C02+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMFF033F15+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMFF041G20+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMSF013F22+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMSF017C17+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
rJMFF025F16+ AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
____________________________________________________________
consensus AGAGGTCTTCGTAAAGTTGCCTGTATTGGTGCCTGGCATCCAGCTAGAGTTTCATTCACA
. : . : . : . : . : . :
rJMFF010C02+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMFF033F15+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMFF041G20+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMSF013F22+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMSF017C17+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
rJMFF025F16+ GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
____________________________________________________________
consensus GTTGCCCGTGCTGGTCAAAATGGATACCATCACCGAACTGAGTTGAACAAAAAGATTTAT
. : . : . : . : . : . :
rJMFF010C02+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMFF033F15+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMFF041G20+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMSF013F22+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMSF017C17+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
rJMFF025F16+ AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
____________________________________________________________
consensus AAGCTTGGCAAGGTTGGACAAGAGTCGCATGAAGCCATAACTGAGTTTGACAGGACTGAG
. : . : . : . : . : . :
rJMFF010C02+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMFF033F15+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMFF041G20+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMSF013F22+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMSF017C17+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
rJMFF025F16+ AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
____________________________________________________________
consensus AAAGACATTACCCCCATGGGTGGGTTTCCTCACTATGGTGTGGTGAAGGACGACTACATC
. : . : . : . : . : . :
rJMFF010C02+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMFF033F15+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMFF041G20+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMSF013F22+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMSF017C17+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
rJMFF025F16+ TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
____________________________________________________________
consensus TTGATCAAGGGATGCTGTGTTGGCCCTAAGAAAAGAGTGGTTACCCTTCGTCAAACTCTG
. : . : . : . : . : . :
rJMFF010C02+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMFF033F15+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMFF041G20+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMSF013F22+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMSF017C17+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
rJMFF025F16+ CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
____________________________________________________________
consensus CTCAACCAGACCTCTCGTGTTGCTCTTGAGGAGATTAAGCTCAAGTTCATTGACACTTCA
. : . : . : . : . : . :
rJMFF010C02+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMFF033F15+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMFF041G20+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMSF013F22+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMSF017C17+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
rJMFF025F16+ TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
____________________________________________________________
consensus TCAAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAATTCTACGGTCGT
. : . : . : . : . : . :
rJMFF010C02+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMFF033F15+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMFF041G20+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMSF013F22+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMSF017C17+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
rJMFF025F16+ CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
____________________________________________________________
consensus CTCAAGGCTTAAGTATTCCCTTAGGTTTCTTGGTGTTCCAACCATTGTCAGTTGTTTTGT
. : . : . : . : . : . :
rJMFF010C02+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMFF033F15+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMFF041G20+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMSF013F22+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMSF017C17+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
rJMFF025F16+ AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
____________________________________________________________
consensus AGACATATTCCTAAGTGTTTCATTTACTGGATTTTGTGGAAATTTTGTTGCTTGCCTTAG
. : . : . : . : . : . :
rJMFF010C02+ GAATTTATCTTTTATTGATTCTTAGAGGATATTTGTTTCCAT
rJMFF033F15+ GAATTTATCTTTTATTGATTCTTAGAGGATATT
rJMFF041G20+ GAATTTATCTTTTATTGATTCTT
rJMSF013F22+ GAATTTATCTTTTATTGATTCTTAGAGGATA
rJMSF017C17+ GAATTTATCTTTTATTGATTCTTAGAGGATATT
rJMFF025F16+ GAATTTATCTTTTATTGATTCTTAGAGGATATTTGTTTCCATTTCAATACTAATACAAGT
____________________________________________________________
consensus GAATTTATCTTTTATTGATTCTTAGAGGATATTTGTTTCCATTTCAATACTAATACAAGT