Contig 005422:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024N20Sequence499005422 (2)gb|EYU17566.1|1e-40hypothetical protein MIMGU_mgv1a004597mg [Erythranthe guttata]684005422 (2)emb|CDP07348.1|4e-29unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF024N20-                                                             AGTCAAAGCT
                      ____________________________________________________________
consensus                                                               AGTCAAAGCT
 
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JMFF024N20-           TGTCTAAGCTCCTCTCTTGTGATGTATCTGGCAAATTTAATGTCAGATTATTATCGCACC
                      ____________________________________________________________
consensus             TGTCTAAGCTCCTCTCTTGTGATGTATCTGGCAAATTTAATGTCAGATTATTATCGCACC
 
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JMFF024N20-           CACCTGAAAACAAAAAAGCAGAAAAAAGAAAAAACGAGTACATACCCACTGTCATCCTTG
                      ____________________________________________________________
consensus             CACCTGAAAACAAAAAAGCAGAAAAAAGAAAAAACGAGTACATACCCACTGTCATCCTTG
 
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JMFF024N20-           TCAAAGTGTTGAAAAGCTTTGTACAAGTTCTCTTCTTTCTCAAGCTTATGCCGATGCATG
rJMFF024N20+                                              TTCTCAAGCTTATGCCGATGCATG
                      ____________________________________________________________
consensus             TCAAAGTGTTGAAAAGCTTTGTACAAGTTCTCTTCTTTCTCAAGCTTATGCCGATGCATG
 
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JMFF024N20-           GTAGCAGTGATGAACTCAAAGTAGTCGAGAGTTCCATTCTTGTCAACATCAGCCTAGGAG
rJMFF024N20+          GTAGCAGTGATGAACTCAAAGTAGTCGAGAGTTCCATTCTTGTCAACATCAGCCTAGGAG
                      ____________________________________________________________
consensus             GTAGCAGTGATGAACTCAAAGTAGTCGAGAGTTCCATTCTTGTCAACATCAGCCTAGGAG
 
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JMFF024N20-           GAAAGACGGAAGTAATGAGATGAATGCTGCAGTTGAAATTTCGGAGTAGTAAAATTCTTA
rJMFF024N20+          GAAAGACGGAAGTAATGAGATGAATGCTGCAGTTGAAATTTCGGAGTAGTAAAATTCTTA
                      ____________________________________________________________
consensus             GAAAGACGGAAGTAATGAGATGAATGCTGCAGTTGAAATTTCGGAGTAGTAAAATTCTTA
 
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JMFF024N20-           CTGCTTCCATCAGCTGTTGTATTTCCGTTTCTGGAAGTTTAGATCCAAGCTTAGCTAACC
rJMFF024N20+          CTGCTTCCATCAGCTGTTGTATTTCCGTTTCTGGAAGTTTAGATCCAAGCTTAGCTAACC
                      ____________________________________________________________
consensus             CTGCTTCCATCAGCTGTTGTATTTCCGTTTCTGGAAGTTTAGATCCAAGCTTAGCTAACC
 
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JMFF024N20-           CGGTCTTGAGTTCTTCATATGTGATAGTGCCACTCCTATCAGTGTCCATATTGTTGAACA
rJMFF024N20+          CGGTCTTGAGTTCTTCATATGTGATAGTGCCACTCCTATCAGTGTCCATATTGTTGAACA
                      ____________________________________________________________
consensus             CGGTCTTGAGTTCTTCATATGTGATAGTGCCACTCCTATCAGTGTCCATATTGTTGAACA
 
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JMFF024N20-           TCTCTCTCAGCCCCTTGATTTCCTCTTCTGATAAGGTCTTTGCTATGACCTTCAAGGAAT
rJMFF024N20+          TCTCTCTCAGCCCCTTGATTTCCTCTTCTGATAAGGTCTTTGCTATGACCTTCAAGGAAT
                      ____________________________________________________________
consensus             TCTCTCTCAGCCCCTTGATTTCCTCTTCTGATAAGGTCTTTGCTATGACCTTCAAGGAAT
 
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JMFF024N20-           ACACATTTC                                                   
rJMFF024N20+          ACACATTTCAGGCATCAAAAGAGTGCAGAAATAGACAGAAAACTGGACAAAGGTGCAGGA
                      ____________________________________________________________
consensus             ACACATTTCAGGCATCAAAAGAGTGCAGAAATAGACAGAAAACTGGACAAAGGTGCAGGA
 
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rJMFF024N20+          AAATGATGCGGTGCAAATACCAGAAACTCAGAAAGTGATTAGAGCTTCATGAAAAAAATC
                      ____________________________________________________________
consensus             AAATGATGCGGTGCAAATACCAGAAACTCAGAAAGTGATTAGAGCTTCATGAAAAAAATC
 
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rJMFF024N20+          AGGTTTGCAAGAAACTTAGCATTATAACCGTATTACTGATACCTTCAGAGCAAGCTGCTT
                      ____________________________________________________________
consensus             AGGTTTGCAAGAAACTTAGCATTATAACCGTATTACTGATACCTTCAGAGCAAGCTGCTT
 
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rJMFF024N20+          CATCTTGTTCATTGCTCTGAATTGCTTCATCCTGTTTAGAACAGCACTATCAATAGGTCT
                      ____________________________________________________________
consensus             CATCTTGTTCATTGCTCTGAATTGCTTCATCCTGTTTAGAACAGCACTATCAATAGGTCT
 
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rJMFF024N20+          GTCTGATGCATTGCCATCTTCCTTGAGCCATGGATGTTCTAGTTCATATATCACGTTCCA
                      ____________________________________________________________
consensus             GTCTGATGCATTGCCATCTTCCTTGAGCCATGGATGTTCTAGTTCATATATCACGTTCCA
 
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rJMFF024N20+          AATTTTAACGATGCTTTACAAAAATGAATACACACACTCACACAGACACAGTATATGCTT
                      ____________________________________________________________
consensus             AATTTTAACGATGCTTTACAAAAATGAATACACACACTCACACAGACACAGTATATGCTT