| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005O15 | Sequence | 523 | 005421 (8) | ref|XP_004235579.1| | 1e-59 | PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like | 674 | 005421 (8) | ref|XP_004235579.1| | 1e-71 | PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like |
| JMFF017P01 | Sequence | 527 | 005421 (8) | ref|XP_004235579.1| | 4e-82 | PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like | 617 | 005421 (8) | ref|XP_004235579.1| | 1e-55 | PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like |
| JMFF024J23 | Sequence | 495 | 005421 (8) | ref|XP_004235579.1| | 3e-74 | PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like | 678 | 005421 (8) | ref|XP_004235579.1| | 3e-72 | PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like |
| JMSF051L02 | Sequence | 657 | 005421 (8) | ref|XP_004235579.1| | 8e-97 | PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like | 702 | 005421 (8) | ref|XP_006342960.1| | 1e-89 | PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like |
This contig is upended
. : . : . : . : . : . :
JMFF024J23- ACC
JMFF017P01- CTCTACC
JMFF005O15- ACC
JMSF051L02- ACC
____________________________________________________________
consensus CTCTACC
. : . : . : . : . : . :
JMFF024J23- TGAGTTTCTCTTTCTGATTGCTCGAGCCAAACCCTAACCTTAGTACGAGAGGGGCGGAGC
JMFF017P01- TGAGTTTCTCTTTCTGATTGCTCGAGCCAAACCCTAACCTTAGTACGAGAGGGGCGGAGC
JMFF005O15- TGAGTTTCTCTTTCTGATTGCTCGAGCCAAACCCTAACCTTAGTACGAGAGGGGCGGAGC
JMSF051L02- TGAGTTTCTCTTTCTGATTGCTCGAGCCAAACCCTAACCTTAGTACGAGAGGGGCGGAGC
____________________________________________________________
consensus TGAGTTTCTCTTTCTGATTGCTCGAGCCAAACCCTAACCTTAGTACGAGAGGGGCGGAGC
. : . : . : . : . : . :
JMFF024J23- AGATCACAGCGAGTTTGTAAAATGGCGTATCAGGCCGGAGCTACGAATCACGCCGACGGA
JMFF017P01- AGATCACAGCGAGTTTGTAAAATGGCGTATCAGGCCGGAGCTACGAATCACGCCGACGGA
JMFF005O15- AGATCACAGCGAGTTTGTAAAATGGCGTATCAGGCCGGAGCTACGAATCACGCCGACGGA
JMSF051L02- AGATCACAGCGAGTTTGTAAAATGGCGTATCAGGCCGGAGCTACGAATCACGCCGACGGA
____________________________________________________________
consensus AGATCACAGCGAGTTTGTAAAATGGCGTATCAGGCCGGAGCTACGAATCACGCCGACGGA
. : . : . : . : . : . :
JMFF024J23- GATAACGACCAAGATCTTCAGAATCGACGGCTCTACAACCCTTACCACGACCTCCAAGTT
JMFF017P01- GATAACGACCAAGATCTTCAGAATCGACGGCTCTACAACCCTTACCACGACCTCCAAGTT
JMFF005O15- GATAACGACCAAGATCTTCAGAATCGACGGCTCTACAACCCTTACCACGACCTCCAAGTT
JMSF051L02- GATAACGACCAAGATCTTCAGAATCGACGGCTCTACAACCCTTACCACGACCTCCAAGTT
rJMSF051L02+ CTACAACCCTTACCACGACCTCCAAGTT
____________________________________________________________
consensus GATAACGACCAAGATCTTCAGAATCGACGGCTCTACAACCCTTACCACGACCTCCAAGTT
. : . : . : . : . : . :
JMFF024J23- CCAATACAGTCTCTTTACAAGCTCCCCACGTCCCCTGAATTCCTTTTTCAAGAGGAGTCC
JMFF017P01- CCAATACAGTCTCTTTACAAGCTCCCCACGTCCCCTGAATTCCTTTTTCAAGAGGAGTCC
JMFF005O15- CCAATACAGTCTCTTTACAAGCTCCCCACGTCCCCTGAATTCCTTTTTCAAGAGGAGTCC
JMSF051L02- CCAATACAGTCTCTTTACAAGCTCCCCACGTCCCCTGAATTCCTTTTTCAAGAGGAGTCC
rJMSF051L02+ CCAATACAGTCTCTTTACAAGCTCCCCACGTCCCCTGAATTCCTTTTTCAAGAGGAGTCC
rJMFF005O15+ TTTTTCAAGAGGAGTCC
rJMFF024J23+ CCTTTTTCAAGAGGAGTCC
____________________________________________________________
consensus CCAATACAGTCTCTTTACAAGCTCCCCACGTCCCCTGAATTCCTTTTTCAAGAGGAGTCC
. : . : . : . : . : . :
JMFF024J23- GTAGCGCAGCGCCGATCCTGGGGGGAGAACCTCACCTACTACACAGGCATCGGCTATCTC
JMFF017P01- GTAGCGCAGCGCCGATCCTGGGGGGAGAACCTCACCTACTACACAGGCATCGGCTATCTC
JMFF005O15- GTAGCGCAGCGCCGATCCTGGGGGGAGAACCTCACCTACTACACAGGCATCGGCTATCTC
JMSF051L02- GTAGCGCAGCGCCGATCCTGGGGGGAGAACCTCACCTACTACACAGGCATCGGCTATCTC
rJMSF051L02+ GTAGCGCAGCGCCGATCCTGGGGGGAGAACCTCACCTACTACACAGGCATCGGCTATCTC
rJMFF005O15+ GTAGCGCAGCGCCGATCCTGGGGGGAGAACCTCACNTACTACACAGGCATCGGCTATCTC
rJMFF017P01+ ACAGGCATCGGCTATCTC
rJMFF024J23+ GTAGCGCAGCGCCGATCCTGGGGGGAGAACCTCACCTACTACACAGGCATCGGCTATCTC
____________________________________________________________
consensus GTAGCGCAGCGCCGATCCTGGGGGGAGAACCTCACCTACTACACAGGCATCGGCTATCTC
. : . : . : . : . : . :
JMFF024J23- GCCGGCGCCACCGTCGGGGCGGGTAAAGGTTTCGTTGACGGCGTCAGAGCTTCGGAGGCT
JMFF017P01- GCCGGCGCCACCGTCGGGGCGGGTAAAGGTTTCGTTGACGGCGTCAGAGCTTCGGAGGCT
JMFF005O15- GCCGGCGCCACCGTCGGGGCGGGTAAAGGTTTCGTTGACGGCGTCAGAGCTTCGGAGGCT
JMSF051L02- GCCGGCGCCACCGTCGGGGCGGGTAAAGGTTTCGTTGACGGCGTCAGAGCTTCGGAGGCT
rJMSF051L02+ GCCGGCGCCACCGTCGGGGCGGGTAAAGGTTTCGTTGACGGCGTCAGAGCTTCGGAGGCT
rJMFF005O15+ GCCGGCGCCACCGTCGGGGCGGGTAAAGGTTTCGTTGACGGCGTCAGAGCTTCGGAGGCT
rJMFF017P01+ GCCGGCGCCACCGTCGGGGCGGGTAAAGGTTTCGTTGACGGCGTCAGAGCTTCGGAGGCT
rJMFF024J23+ GCCGGCGCCACCGTCGGGGCGGGTAAAGGTTTCGTTGACGGCGTCAGAGCTTCGGAGGCT
____________________________________________________________
consensus GCCGGCGCCACCGTCGGGGCGGGTAAAGGTTTCGTTGACGGCGTCAGAGCTTCGGAGGCT
. : . : . : . : . : . :
JMFF024J23- GGAGACACCATGAAACTCCGGGTCAACAGAATCCTCAACGGGTCGGGCCACAC-GGGCCG
JMFF017P01- GGAGACACCATGAAACTCCGGGTCAACAGAATCCTCAACGGGTCGGGCCACAC-GGGCCG
JMFF005O15- GGAGACACCATGAAACTCCGGGTCAACAGAATCCTCAACGGGTCGGGCCACACGGGGCCG
JMSF051L02- GGAGACACCATGAAACTCCGGGTCAACAGAATCCTCAACGGGTCGGGCCACAC-GGGCCG
rJMSF051L02+ GGAGACACCATGAAACTCCGGGTCAACAGAATCCTCAACGGGTCGGGCCACAC-GGGCCG
rJMFF005O15+ GGAGACACCATGAAACTCCGGGTCAACAGAATCCTCAACGGGTCGGGCCACAC-GGGCCG
rJMFF017P01+ GGAGACACCATGAAACTCCGGGTCAACAGAATCCTCAACGGGTCGGGCCACAC-GGGCCG
rJMFF024J23+ GGAGACACCATGAAACTCCGGGTCAACAGAATCCTCAACGGGTCGGGCCACAC-GGGCCG
____________________________________________________________
consensus GGAGACACCATGAAACTCCGGGTCAACAGAATCCTCAACGGGTCGGGCCACAC-GGGCCG
. : . : . : . : . : . :
JMFF024J23- GAAGTTCGGGAACCGGGCGGGCGTTATCGGGCTGCTTTATGCTGGGATGGAGAGCGGCAT
JMFF017P01- GAAGTTCGGGAACCGGGCGGGCGTTATCGGGCTGCTTTATGCTGGGATGGAGAGCGGCAT
JMFF005O15- GAAGTTCGGGAACCGGGCGGGCGTTATCGGGCTGCTTTATGCTGGGATGGAGAGCGGCAT
JMSF051L02- GAAGTTCGGGAACCGGGCGGGCGTTATCGGGCTGCTTTATGCTGGGATGGAGAGCGGCAT
rJMSF051L02+ GAAGTTCGGGAACCGGGCGGGCGTTATCGGGCTGCTTTATGCTGGGATGGAGAGCGGCAT
rJMFF005O15+ GAAGTTCGGGAACCGGGCGGGCGTTATCGGGCTGCTTTATGCTGGGATGGAGAGCGGCAT
rJMFF017P01+ GAAGTTCGGGAACCGGGCGGGCGTTATCGGGCTGCTTTATGCTGGGATGGAGAGCGGCAT
rJMFF024J23+ GAAGTTCGGGAACCGGGCGGGCGTTATCGGGCTGCTTTATGCTGGGATGGAGAGCGGCAT
____________________________________________________________
consensus GAAGTTCGGGAACCGGGCGGGCGTTATCGGGCTGCTTTATGCTGGGATGGAGAGCGGCAT
. : . : . : . : . : . :
JMFF024J23- GGTCGCGGC
JMFF017P01- GGTCGCGGCCAGGGATACGGATGACGTCATCAACAGCGTAG
JMFF005O15- GGTCGCGGCCAGGGATACGGATGACGTCATCAACAGCGTA
JMSF051L02- GGTCGCGGCCAGGGATACGGATGACGTCATCAACAGCGTAGTGGCGGGATTGGGCACTGG
rJMSF051L02+ GGTCGCGGCCAGGGATACGGATGACGTCATCAACAGCGTAGTGGCGGGATTGGGCACTGG
rJMFF005O15+ GGTCGCGGCCAGGGATACGGATGACGTCATCAACAGCGTAGTGGCGGGATTGGGCACTGG
rJMFF017P01+ GGTCGCGGCCAGGGATACGGATGACGTCATCAACAGCGTAGTGGCGGGATTGGGCACTGG
rJMFF024J23+ GGTCGCGGCCAGGGATACGGATGACGTCATCAACAGCGTAGTGGCGGGATTGGGCACTGG
____________________________________________________________
consensus GGTCGCGGCCAGGGATACGGATGACGTCATCAACAGCGTAGTGGCGGGATTGGGCACTGG
. : . : . : . : . : . :
JMSF051L02- CGCGCTCTACAGGGCGGCGTCGGGGCTGAGGTCTGCAGCAGTCGCCGGAGTCATCGGCGG
rJMSF051L02+ CGCGCTCTACAGGGCGGCGTCGGGGCTGAGGTCTGCAGCAGTCGCCGGAGTCATCGGCGG
rJMFF005O15+ CGCGCTCTACAGGGCGGCGTCGGGGCTGAGGTCTGCAGCAGTCGCCGGAGTCATCGGCGG
rJMFF017P01+ CGCGCTCTACAGGGCGGCGTCGGGGCTGAGGTCTGCAGCAGTCGCCGGAGTCATCGGCGG
rJMFF024J23+ CGCGCTCTACAGGGCGGCGTCGGGGCTGAGGTCTGCAGCAGTCGCCGGAGTCATCGGCGG
____________________________________________________________
consensus CGCGCTCTACAGGGCGGCGTCGGGGCTGAGGTCTGCAGCAGTCGCCGGAGTCATCGGCGG
. : . : . : . : . : . :
JMSF051L02- CGTGGTTGTTGGATTGGGAGTCACCGCAAAACAGGCAATGAAACGCTATGTTCC
rJMSF051L02+ CGTGGTTGTTGGATTGGGAGTCACCGCAAAACAGGCAATGAAACGCTATGTTCCAATCTG
rJMFF005O15+ CGTGGTTGTTGGATTGGGAGTCACCGCAAAACAGGCAATGAAACGCTATGTTCCAATCTG
rJMFF017P01+ CGTGGTTGTTGGATTGGGAGTCACCGCAAAACAGGCAATGAAACGCTATGTTCCAATCTG
rJMFF024J23+ CGTGGTTGTTGGATTGGGAGTCACCGCAAAACAGGCAATGAAACGCTATGTTCCAATCTG
____________________________________________________________
consensus CGTGGTTGTTGGATTGGGAGTCACCGCAAAACAGGCAATGAAACGCTATGTTCCAATCTG
. : . : . : . : . : . :
rJMSF051L02+ AGAATTTTCTTCTTTGTCTTGTTTGTTGCCTTTCACGTTTTACATCAGTAGAGAAAAAAA
rJMFF005O15+ AGAATTTTCTTCTTTGTCTTGTTTGTTGCCTTTCACGTTTTACATCAGTAGAGAAAAAAA
rJMFF017P01+ AGAATTTTCTTCTTTGTCTTGTTTGTTGCCTTTCACGTTTTACATCAGTAGAGAAAAAAA
rJMFF024J23+ AGAATTTTCTTCTTTGTCTTGTTTGTTGCCTTTCACGTTTTACATCAGTAGAGAAAAAAA
____________________________________________________________
consensus AGAATTTTCTTCTTTGTCTTGTTTGTTGCCTTTCACGTTTTACATCAGTAGAGAAAAAAA
. : . : . : . : . : . :
rJMSF051L02+ TTTTGATCAACCGTTTGAGAAATTGATTGTCATATTGATCAACAATGTAGTTGGGGCATG
rJMFF005O15+ TTTTGATCAACCGTTTGAGAAATTGATTGTCATATTGATCAACAATGTAGTTGGGGCATG
rJMFF017P01+ TTTTGATCAACCGTTTGAGAAATTGATTGTCATATTGATCAACAATGTAGTTGGGGCATG
rJMFF024J23+ TTTTGATCAACCGTTTGAGAAATTGATTGTCATATTGATCAACAATGTAGTTGGGGCATG
____________________________________________________________
consensus TTTTGATCAACCGTTTGAGAAATTGATTGTCATATTGATCAACAATGTAGTTGGGGCATG
. : . : . : . : . : . :
rJMSF051L02+ AAGGGTGCATGCTTTACCAGACATGTCTACATTTTTTTCTGATATACTCTTTAGTAGTTG
rJMFF005O15+ AAGGGTGCATGCTTTACCAGACATGTCTACATTTTTTTCTGATATACTCTTTAGTAGTTG
rJMFF017P01+ AAGGGTGCATGCTTTACCAGACATGTCTACATTTTTTTCTGATATACTCTTTAGTAGTTG
rJMFF024J23+ AAGGGTGCATGCTTTACCAGACATGTCTACATTTTTTTCTGATATACTCTTTAGTAGTTG
____________________________________________________________
consensus AAGGGTGCATGCTTTACCAGACATGTCTACATTTTTTTCTGATATACTCTTTAGTAGTTG
. : . : . : . : . : . :
rJMSF051L02+ TAGTAGC
rJMFF005O15+ TAGTAGCATAGTGCTATTCAATAAATTTTGCAGAAAAAACCAGGTGATGAGTATACAA
rJMFF017P01+ TAGTAGCATAGTGCTATTCAATAAATTTTGCAGAAAAAACCAGGTGATGAGTATACAA
rJMFF024J23+ TAGTAGCATAGTGCTATTCAATAAATTTTGCAGAAAAAACCAGGTGATGAGTATACAATT
____________________________________________________________
consensus TAGTAGCATAGTGCTATTCAATAAATTTTGCAGAAAAAACCAGGTGATGAGTATACAATT