Contig 005419:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023L12Sequence748005419 (6)ref|XP_009772578.1|5e-101PREDICTED: tetratricopeptide repeat protein 1 isoform X1 [Nicotiana sylvestris]
JMFF037B08Sequence496005419 (6)ref|XP_009772579.1|9e-09PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris]686005419 (6)ref|XP_009772579.1|1e-89PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris]
JMFF040H15Sequence784005419 (6)ref|XP_009772579.1|5e-96PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris]
JMSF013N18Sequence481005419 (6)ref|XP_009772579.1|5e-14PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris]695005419 (6)ref|XP_009772579.1|9e-97PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF037B08- GAAGCAACACTACAACCTTTTTACGCCCCGGTC
                      ____________________________________________________________
consensus GAAGCAACACTACAACCTTTTTACGCCCCGGTC
 
. : . : . : . : . : . :
JMFF037B08- TACTCCAGGGGAAGACAATCAAACAGAGAAAAAGCAACGCAGCAATGGTGTTGATCGAAG
JMSF013N18- GGGGAAGACAATCAAACAGAGAAAAAGCAACGCAGCAATGGTGTTGATCGAAG
                      ____________________________________________________________
consensus TACTCCAGGGGAAGACAATCAAACAGAGAAAAAGCAACGCAGCAATGGTGTTGATCGAAG
 
. : . : . : . : . : . :
JMFF037B08- CTGTGCCATCCTCTGACGAAACGTCAAAGCCAAAACCGCCTCCAGTCAAGGCGGCTGAAG
JMSF013N18- CTGTGCCATCCTCTGACGAAACGTCAAAGCCAAAACCGCCTCCAGTCAAGGCGGCTGAAG
                      ____________________________________________________________
consensus CTGTGCCATCCTCTGACGAAACGTCAAAGCCAAAACCGCCTCCAGTCAAGGCGGCTGAAG
 
. : . : . : . : . : . :
JMFF037B08- CATCGACAGGCGCTGGTTCGTCCTCTGCGGCTGCGGCGCCGGCATCTGGATATGGTTCCG
JMSF013N18- CATCGACAGGCGCTGGTTCGTCCTCTGCGGCTGCGGCGCCGGCATCTGGATATGGTTCCG
                      ____________________________________________________________
consensus CATCGACAGGCGCTGGTTCGTCCTCTGCGGCTGCGGCGCCGGCATCTGGATATGGTTCCG
 
. : . : . : . : . : . :
JMFF037B08- ATGGTTACGAGACTGCTAGCGATACCGAACTTAACGAGACCGATGAGGCGGAAGGGAAGA
JMSF013N18- ATGGTTACGAGACTGCTAGCGATACCGAACTTAACGAGACCGATGAGGCAGAAGGGAAGA
                      ____________________________________________________________
consensus ATGGTTACGAGACTGCTAGCGATACCGAACTTAACGAGACCGATGAGGCGGAAGGGAAGA
 
. : . : . : . : . : . :
JMFF037B08- AAGAGGAACAAAACCTTAGTCACAGTAGTGTAAAGGACGAGAAAGCAAAAGAAGATTATG
JMSF013N18- AAGAGGAACAAAACCTTAGTCACAGTAGTGTAAAGGACGAGAAAGCAAAAGAAGATTATG
                      ____________________________________________________________
consensus AAGAGGAACAAAACCTTAGTCACAGTAGTGTAAAGGACGAGAAAGCAAAAGAAGATTATG
 
. : . : . : . : . : . :
JMFF037B08- GGAGCCCTGCCACATCAACACCTTCGTCTTCTTCGGGTGGAAATGAAGAGGCGCCGAAAC
JMSF013N18- GGAGCCCTGCCACATCAACACCTTCGTCTTCTTCGGGTGGAAATGAAGAGGCGCCGAAAC
rJMSF013N18+ TTCGGGTGGAAATGAAGAGGCGCCGAAAC
rJMFF040H15+ C
                      ____________________________________________________________
consensus GGAGCCCTGCCACATCAACACCTTCGTCTTCTTCGGGTGGAAATGAAGAGGCGCCGAAAC
 
. : . : . : . : . : . :
JMFF037B08- AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTCTGGCCAATGATT
JMSF013N18- AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTCTGGCCAATGATT
rJMSF013N18+ AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTCTGGCCAATGATT
rJMFF037B08+ CAATGATT
rJMFF040H15+ AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTNTGNCCAATGATT
rJMFF023L12+ CGAGAAAGCAATGGCTCTGGCCAATGA-T
                      ____________________________________________________________
consensus AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTCTGGCCAATGATT
 
. : . : . : . : . : . :
JMFF037B08- TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGA
JMSF013N18- TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
rJMSF013N18+ TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
rJMFF037B08+ TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
rJMFF040H15+ TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
rJMFF023L12+ TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
                      ____________________________________________________________
consensus TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
 
. : . : . : . : . : . :
JMSF013N18- ATGAGCT
rJMSF013N18+ ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
rJMFF037B08+ ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
rJMFF040H15+ ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
rJMFF023L12+ ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
                      ____________________________________________________________
consensus ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
 
. : . : . : . : . : . :
rJMSF013N18+ GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
rJMFF037B08+ GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
rJMFF040H15+ GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
rJMFF023L12+ GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
                      ____________________________________________________________
consensus GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
 
. : . : . : . : . : . :
rJMSF013N18+ AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
rJMFF037B08+ AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
rJMFF040H15+ AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
rJMFF023L12+ AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
                      ____________________________________________________________
consensus AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
 
. : . : . : . : . : . :
rJMSF013N18+ AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
rJMFF037B08+ AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
rJMFF040H15+ AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
rJMFF023L12+ AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
                      ____________________________________________________________
consensus AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
 
. : . : . : . : . : . :
rJMSF013N18+ AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
rJMFF037B08+ AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
rJMFF040H15+ AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
rJMFF023L12+ AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
                      ____________________________________________________________
consensus AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
 
. : . : . : . : . : . :
rJMSF013N18+ ATGAAAAGCGTGAAAAGATGAAGGAAGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
rJMFF037B08+ ATGAAAAGCGTGAAAAGATGAAGGAAGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
rJMFF040H15+ ATGAAAAGCGTGAAAAGATGAAGGAAGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
rJMFF023L12+ ATGAGAAGCGTGAAAAGATGAAGGATGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
                      ____________________________________________________________
consensus ATGAAAAGCGTGAAAAGATGAAGGAAGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
 
. : . : . : . : . : . :
rJMSF013N18+ CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAAGATCCAAATA
rJMFF037B08+ CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAAGATCCAAATA
rJMFF040H15+ CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAAGATCCAAATA
rJMFF023L12+ CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAATATCCAAATA
                      ____________________________________________________________
consensus CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAAGATCCAAATA
 
. : . : . : . : . : . :
rJMSF013N18+ CAGGATCATATTCCATTTCATTTCAGAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
rJMFF037B08+ CAGGATCATATTCCATTTCATTTCAGAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
rJMFF040H15+ CAGGATCATATTCCATTTCATTTCAAAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
rJMFF023L12+ CAGGATCATATTCCATTTCATTTCAGAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
                      ____________________________________________________________
consensus CAGGATCATATTCCATTTCATTTCAGAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
 
. : . : . : . : . : . :
rJMSF013N18+ GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
rJMFF037B08+ GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
rJMFF040H15+ GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
rJMFF023L12+ GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
                      ____________________________________________________________
consensus GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
 
. : . : . : . : . : . :
rJMSF013N18+ CACTAT
rJMFF037B08+ CACTATTGACTATTTGGGTCTCACCTGGGAAATGACATGGTCTTTTGGAACAGGGAAAAT
rJMFF040H15+ CACTATTGACTATTTGGGTCTCACCTGGGAAATGACATGGTCTTTTGGAACAGGGAAAAT
rJMFF023L12+ CACTATTGACTATTTGGGTCTCACCTGGGAAATGACATGGTCTTTTGGAACAGGGAAAAT
                      ____________________________________________________________
consensus CACTATTGACTATTTGGGTCTCACCTGGGAAATGACATGGTCTTTTGGAACAGGGAAAAT
 
. : . : . : . : . : . :
rJMFF037B08+ CTTTAAAAAAATGGGAAT
rJMFF040H15+ CTTTAAAAAAATGGGAATGTTATTAGACACTTATTTTGTGGATTATTCTTGTGAAATGA
rJMFF023L12+ CTTTAAAAAAATGGGAATGTTATTAGACACTTATTTTGTGGATTATTCTTGTGAAATGAC
                      ____________________________________________________________
consensus CTTTAAAAAAATGGGAATGTTATTAGACACTTATTTTGTGGATTATTCTTGTGAAATGAC