| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF023L12 | Sequence | 748 | 005419 (6) | ref|XP_009772578.1| | 5e-101 | PREDICTED: tetratricopeptide repeat protein 1 isoform X1 [Nicotiana sylvestris] | |||||
| JMFF037B08 | Sequence | 496 | 005419 (6) | ref|XP_009772579.1| | 9e-09 | PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris] | 686 | 005419 (6) | ref|XP_009772579.1| | 1e-89 | PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris] |
| JMFF040H15 | Sequence | 784 | 005419 (6) | ref|XP_009772579.1| | 5e-96 | PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris] | |||||
| JMSF013N18 | Sequence | 481 | 005419 (6) | ref|XP_009772579.1| | 5e-14 | PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris] | 695 | 005419 (6) | ref|XP_009772579.1| | 9e-97 | PREDICTED: tetratricopeptide repeat protein 1 isoform X2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFF037B08- GAAGCAACACTACAACCTTTTTACGCCCCGGTC
____________________________________________________________
consensus GAAGCAACACTACAACCTTTTTACGCCCCGGTC
. : . : . : . : . : . :
JMFF037B08- TACTCCAGGGGAAGACAATCAAACAGAGAAAAAGCAACGCAGCAATGGTGTTGATCGAAG
JMSF013N18- GGGGAAGACAATCAAACAGAGAAAAAGCAACGCAGCAATGGTGTTGATCGAAG
____________________________________________________________
consensus TACTCCAGGGGAAGACAATCAAACAGAGAAAAAGCAACGCAGCAATGGTGTTGATCGAAG
. : . : . : . : . : . :
JMFF037B08- CTGTGCCATCCTCTGACGAAACGTCAAAGCCAAAACCGCCTCCAGTCAAGGCGGCTGAAG
JMSF013N18- CTGTGCCATCCTCTGACGAAACGTCAAAGCCAAAACCGCCTCCAGTCAAGGCGGCTGAAG
____________________________________________________________
consensus CTGTGCCATCCTCTGACGAAACGTCAAAGCCAAAACCGCCTCCAGTCAAGGCGGCTGAAG
. : . : . : . : . : . :
JMFF037B08- CATCGACAGGCGCTGGTTCGTCCTCTGCGGCTGCGGCGCCGGCATCTGGATATGGTTCCG
JMSF013N18- CATCGACAGGCGCTGGTTCGTCCTCTGCGGCTGCGGCGCCGGCATCTGGATATGGTTCCG
____________________________________________________________
consensus CATCGACAGGCGCTGGTTCGTCCTCTGCGGCTGCGGCGCCGGCATCTGGATATGGTTCCG
. : . : . : . : . : . :
JMFF037B08- ATGGTTACGAGACTGCTAGCGATACCGAACTTAACGAGACCGATGAGGCGGAAGGGAAGA
JMSF013N18- ATGGTTACGAGACTGCTAGCGATACCGAACTTAACGAGACCGATGAGGCAGAAGGGAAGA
____________________________________________________________
consensus ATGGTTACGAGACTGCTAGCGATACCGAACTTAACGAGACCGATGAGGCGGAAGGGAAGA
. : . : . : . : . : . :
JMFF037B08- AAGAGGAACAAAACCTTAGTCACAGTAGTGTAAAGGACGAGAAAGCAAAAGAAGATTATG
JMSF013N18- AAGAGGAACAAAACCTTAGTCACAGTAGTGTAAAGGACGAGAAAGCAAAAGAAGATTATG
____________________________________________________________
consensus AAGAGGAACAAAACCTTAGTCACAGTAGTGTAAAGGACGAGAAAGCAAAAGAAGATTATG
. : . : . : . : . : . :
JMFF037B08- GGAGCCCTGCCACATCAACACCTTCGTCTTCTTCGGGTGGAAATGAAGAGGCGCCGAAAC
JMSF013N18- GGAGCCCTGCCACATCAACACCTTCGTCTTCTTCGGGTGGAAATGAAGAGGCGCCGAAAC
rJMSF013N18+ TTCGGGTGGAAATGAAGAGGCGCCGAAAC
rJMFF040H15+ C
____________________________________________________________
consensus GGAGCCCTGCCACATCAACACCTTCGTCTTCTTCGGGTGGAAATGAAGAGGCGCCGAAAC
. : . : . : . : . : . :
JMFF037B08- AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTCTGGCCAATGATT
JMSF013N18- AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTCTGGCCAATGATT
rJMSF013N18+ AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTCTGGCCAATGATT
rJMFF037B08+ CAATGATT
rJMFF040H15+ AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTNTGNCCAATGATT
rJMFF023L12+ CGAGAAAGCAATGGCTCTGGCCAATGA-T
____________________________________________________________
consensus AGAAAATGGAATCCGATATGGATCAACTTCACGAGAAAGCAATGGCTCTGGCCAATGATT
. : . : . : . : . : . :
JMFF037B08- TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGA
JMSF013N18- TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
rJMSF013N18+ TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
rJMFF037B08+ TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
rJMFF040H15+ TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
rJMFF023L12+ TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
____________________________________________________________
consensus TGAAGCTTGAAGGAAATACATTGTTTAGGGATGGGCTTCATGAAGAGGCGTTGTCCAAGT
. : . : . : . : . : . :
JMSF013N18- ATGAGCT
rJMSF013N18+ ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
rJMFF037B08+ ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
rJMFF040H15+ ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
rJMFF023L12+ ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
____________________________________________________________
consensus ATGAGCTAGCTTTGCAAGCTGTAAAAGATGCCCCTTCATCTAGTGAAATTCAATCAATAT
. : . : . : . : . : . :
rJMSF013N18+ GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
rJMFF037B08+ GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
rJMFF040H15+ GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
rJMFF023L12+ GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
____________________________________________________________
consensus GCCATGCAAACCGTGCAGCTTGTTTCTCTAAACTGGGAAAATATACAGAGACAATCAGTG
. : . : . : . : . : . :
rJMSF013N18+ AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
rJMFF037B08+ AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
rJMFF040H15+ AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
rJMFF023L12+ AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
____________________________________________________________
consensus AATGCACCAAGGCGTTAGAACTAAATCCTACATATGTGAAAGCATTGCTTAGAAGGGCAG
. : . : . : . : . : . :
rJMSF013N18+ AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
rJMFF037B08+ AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
rJMFF040H15+ AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
rJMFF023L12+ AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
____________________________________________________________
consensus AGACTAATGAAAAGCTTGAACATTATGATGAGGCTATCAAAGATATGACAAAAATCTTGG
. : . : . : . : . : . :
rJMSF013N18+ AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
rJMFF037B08+ AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
rJMFF040H15+ AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
rJMFF023L12+ AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
____________________________________________________________
consensus AGTTGGAACCTTCACATGATCAAGCTAGAAGAGCAATTGTTCGTTTGAAACCACTGGCAG
. : . : . : . : . : . :
rJMSF013N18+ ATGAAAAGCGTGAAAAGATGAAGGAAGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
rJMFF037B08+ ATGAAAAGCGTGAAAAGATGAAGGAAGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
rJMFF040H15+ ATGAAAAGCGTGAAAAGATGAAGGAAGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
rJMFF023L12+ ATGAGAAGCGTGAAAAGATGAAGGATGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
____________________________________________________________
consensus ATGAAAAGCGTGAAAAGATGAAGGAAGAAATGATTGGGAAGATGAAAGAAATGGGAAACT
. : . : . : . : . : . :
rJMSF013N18+ CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAAGATCCAAATA
rJMFF037B08+ CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAAGATCCAAATA
rJMFF040H15+ CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAAGATCCAAATA
rJMFF023L12+ CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAATATCCAAATA
____________________________________________________________
consensus CCATTTTGGGGAAATTTGGGATGAGTGTCGACAACTTCAAAGCTGTCAAAGATCCAAATA
. : . : . : . : . : . :
rJMSF013N18+ CAGGATCATATTCCATTTCATTTCAGAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
rJMFF037B08+ CAGGATCATATTCCATTTCATTTCAGAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
rJMFF040H15+ CAGGATCATATTCCATTTCATTTCAAAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
rJMFF023L12+ CAGGATCATATTCCATTTCATTTCAGAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
____________________________________________________________
consensus CAGGATCATATTCCATTTCATTTCAGAGGTAGTGGTGTGACAATTCTGGGATGCCTGTGG
. : . : . : . : . : . :
rJMSF013N18+ GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
rJMFF037B08+ GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
rJMFF040H15+ GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
rJMFF023L12+ GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
____________________________________________________________
consensus GATTATTTTTTGTTTTGTTTTTGGTTTTTAGTATATAAAACCATTTGCCCTTGTATACGT
. : . : . : . : . : . :
rJMSF013N18+ CACTAT
rJMFF037B08+ CACTATTGACTATTTGGGTCTCACCTGGGAAATGACATGGTCTTTTGGAACAGGGAAAAT
rJMFF040H15+ CACTATTGACTATTTGGGTCTCACCTGGGAAATGACATGGTCTTTTGGAACAGGGAAAAT
rJMFF023L12+ CACTATTGACTATTTGGGTCTCACCTGGGAAATGACATGGTCTTTTGGAACAGGGAAAAT
____________________________________________________________
consensus CACTATTGACTATTTGGGTCTCACCTGGGAAATGACATGGTCTTTTGGAACAGGGAAAAT
. : . : . : . : . : . :
rJMFF037B08+ CTTTAAAAAAATGGGAAT
rJMFF040H15+ CTTTAAAAAAATGGGAATGTTATTAGACACTTATTTTGTGGATTATTCTTGTGAAATGA
rJMFF023L12+ CTTTAAAAAAATGGGAATGTTATTAGACACTTATTTTGTGGATTATTCTTGTGAAATGAC
____________________________________________________________
consensus CTTTAAAAAAATGGGAATGTTATTAGACACTTATTTTGTGGATTATTCTTGTGAAATGAC