Contig 005418:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023J20Sequence746005418 (3)ref|XP_010066541.1|6e-72PREDICTED: protein BASIC PENTACYSTEINE2 [Eucalyptus grandis] gb|KCW64449.1| hypo
JMSF001H18Sequence427023092ref|XP_009608500.1|5e-45PREDICTED: protein BASIC PENTACYSTEINE2 [Nicotiana tomentosiformis] gb|ADV59383.723005418 (3)ref|NP_001266117.1|1e-75GAGA-binding transcriptional activator [Solanum lycopersicum] gb|ADV59386.1| GAG
JMSF035H05Sequence665005418 (3)gb|KDP38181.1|2e-72hypothetical protein JCGZ_04824 [Jatropha curcas]

Alignment

This contig is upended


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rJMSF001H18+                 TATGCAAATGCTACAGACTGATTCAACTAAGGAGGAAGTTGGTACTGTGGAGG
rJMFF023J20+                                            TAAGGAGGAAGTTGGTNCTGTGGAGG
                      ____________________________________________________________
consensus                    TATGCAAATGCTACAGACTGATTCAACTAAGGAGGAAGTTGGTACTGTGGAGG
 
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rJMSF001H18+          ATCCAAGTGTTGGTAAGGATAGTTGCCCTTCAAAGAAGAGGCCGGGTGCTGCAGCCTCAT
rJMFF023J20+          ATCCAAGTGTTGGTAAGGATAGTTGCCCTTCAAAGAAGAGGCCGGGTGCTGCAGCCTCAT
                      ____________________________________________________________
consensus             ATCCAAGTGTTGGTAAGGATAGTTGCCCTTCAAAGAAGAGGCCGGGTGCTGCAGCCTCAT
 
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rJMSF001H18+          CACCGAAAGCAAAGAAGCCAAAGAAAGGTCCGTCTGCACCGAAGAAAAATGACAACCCTC
rJMFF023J20+          CACCGAAAGCAAAGAAGCCAAAGAAAGGTCCGTCTGCACCGAAGAAAAATGACAACCCTC
                      ____________________________________________________________
consensus             CACCGAAAGCAAAGAAGCCAAAGAAAGGTCCGTCTGCACCGAAGAAAAATGACAACCCTC
 
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rJMSF001H18+          CTGCTCAACGGGCAAAACCAGCAAAGAAGAGTATAGATGTTGTAATAAGTGGAATTGATA
rJMSF035H05+                     GCAAAGCCAGCAAAGAAGAGTATAGACGTGGTTATAAGCGGGGTCGATA
rJMFF023J20+          CTGCTCAACGGGCAAAACCAGCAAAGAAGAGTATAGATGTTGTAATAAGTGGAATTGATA
                      ____________________________________________________________
consensus             CTGCTCAACGGGCAAAACCAGCAAAGAAGAGTATAGATGTTGTAATAAGTGGAATTGATA
 
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rJMSF001H18+          TGGATATATCGAGCATCCCAACTCCCGTTTGTACCTGCACCGGGACACCTCAACAGTGTT
rJMSF035H05+          TGGATATCTNGAGCATCCCAACTCCCGTGTGTACTTGCACCGGGACACCCCAACAGTGCT
rJMFF023J20+          TGGATATATCGAGCATCCCAACTCCCGTTTGTACCTGCACCGGGACACCTCAACAGTGTT
                      ____________________________________________________________
consensus             TGGATATATCGAGCATCCCAACTCCCGTTTGTACCTGCACCGGGACACCTCAACAGTGTT
 
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rJMSF001H18+          ACCGTTGGGGATGTGGAGGCTGGCAGTCAGCATGTTGCACCACAACTATATCGATGTACC
rJMSF035H05+          ACCGGTGGGGGTGTGGAGGCTGGCAGTCGGCATGTTGCACCACGACTATATCAATGTACC
rJMFF023J20+          ACCGTTGGGGATGTGGAGGCTGGCAGTCAGCATGTTGCACCACAACTATATCGATGTACC
                      ____________________________________________________________
consensus             ACCGTTGGGGATGTGGAGGCTGGCAGTCAGCATGTTGCACCACAACTATATCGATGTACC
 
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rJMSF001H18+          CCTTGCCTATGAATAACAAAAGGCGGGGAGCCAGGATTGCTGGTAGGAAGATGAGTCAAG
rJMSF035H05+          CTTTGCCTATGAACAACAAGAGACGCGGGGCAAGGATTGCTGGACGGAAGATGAGCCAGG
rJMFF023J20+          CCTTGCCTATGAATAACAAAAGGCGGGGAGCCAGGATTGCTGGTAGGAAGATGAGTCAAG
                      ____________________________________________________________
consensus             CCTTGCCTATGAATAACAAAAGGCGGGGAGCCAGGATTGCTGGTAGGAAGATGAGTCAAG
 
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rJMSF001H18+          GTGCATTTAAAAAGGTTTTGGAGAAGCTTGCTTCTGAAGGCTATAATTTTTCTGACCCAA
rJMSF035H05+          GTGCATTCAAAAAGGTCTTGGAGAAACTTGCGGGTGAAGGGTATAACTTCGCTAACCCTA
rJMFF023J20+          GTGCATTTAAAAAGGTTTTGGAGAAGCTTGCTTCTGAAGGCTATAATTTTTCTGACCCAA
                      ____________________________________________________________
consensus             GTGCATTTAAAAAGGTTTTGGAGAAGCTTGCTTCTGAAGGCTATAATTTTTCTGACCCAA
 
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rJMSF001H18+          TCGATCTAAGGACTTACTGGGCTAAGCATGGTACTAACAAATTCGTGACAATCAGGTAAA
rJMSF035H05+          TCGATCTAAGGACTCACTGGGNTAAGCATGGAACTAACAAGTTTGTGACCATCAGGTAAA
rJMFF023J20+          TCGATCTAAGGACTTACTGGGCTAAGCATGGTACTAACAAATTCGTGACAATCAGGTAAA
                      ____________________________________________________________
consensus             TCGATCTAAGGACTTACTGGGCTAAGCATGGTACTAACAAATTCGTGACAATCAGGTAAA
 
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rJMSF001H18+          ACTCGCATCAATGGTATCAGTTCTTGACAGTCATTGCCATGCTCTCTGTTTTTTGTTGTA
rJMFF023J20+          ACTCGCATCAATGGTATCAGTTCTTGACAGTCATTGCCATGCTCTCTGTTTTTTGTTGTA
                      ____________________________________________________________
consensus             ACTCGCATCAATGGTATCAGTTCTTGACAGTCATTGCCATGCTCTCTGTTTTTTGTTGTA
 
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rJMSF001H18+          TATACTTCGATGGCCATGGCCAAGGCCAAGATTTAATTTGTACTTTCTAGTCCATTTTAC
rJMFF023J20+          TATACTTCGATGGCCATGGCCAAGGCCAAGATTTAATTTGTACTTTCTAGTCCATTTTAC
                      ____________________________________________________________
consensus             TATACTTCGATGGCCATGGCCAAGGCCAAGATTTAATTTGTACTTTCTAGTCCATTTTAC
 
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rJMSF001H18+          AGCGATTATACTTATGACTTTGACATTTGAGATTAAACTTCTCTTCTGTTTCTTTAATGG
rJMFF023J20+          AGCGATTATACTTATGACTTTGACATTTGAGATTAAACTTCTCTTCTGTTTCTTTAATGG
                      ____________________________________________________________
consensus             AGCGATTATACTTATGACTTTGACATTTGAGATTAAACTTCTCTTCTGTTTCTTTAATGG
 
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rJMSF001H18+          CCATTAATGT                                                  
rJMFF023J20+          CCATTAATGTTTCTTGGCCACATAAAGTAGCAGTCATGACTCATGAATATTTCTCTTTTA
                      ____________________________________________________________
consensus             CCATTAATGTTTCTTGGCCACATAAAGTAGCAGTCATGACTCATGAATATTTCTCTTTTA