Contig 005417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002J14Sequence547005417 (5)gb|AFK36986.1|2e-59unknown [Lotus japonicus]605005417 (5)gb|AFK36986.1|4e-59unknown [Lotus japonicus]
JMFF023J11Sequence538005417 (5)gb|AFK36986.1|2e-59unknown [Lotus japonicus]623005417 (5)gb|AFK36986.1|5e-59unknown [Lotus japonicus]
JMSF045D04Sequence808010880 (2)ref|XP_009623841.1|9e-129PREDICTED: AP-1 complex subunit mu-2 [Nicotiana tomentosiformis]727005417 (5)ref|XP_010682420.1|9e-140PREDICTED: AP-1 complex subunit mu-2 [Beta vulgaris subsp. vulgaris]

Alignment

This contig is upended


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rJMSF045D04+                                                  AGTGTAAACTTGGTCTGAAT
                      ____________________________________________________________
consensus                                                     AGTGTAAACTTGGTCTGAAT
 
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rJMSF045D04+          GACAGAGTTTTTACTGGAGGCTCAAGGACGATCTACTAAGGGAAAAGCCATTGATTTAGA
                      ____________________________________________________________
consensus             GACAGAGTTTTTACTGGAGGCTCAAGGACGATCTACTAAGGGAAAAGCCATTGATTTAGA
 
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rJMSF045D04+          TGACATCAAGTTTCATCAATGTGTTCGCTTGGCCCGATTTGAAAATGATCGAACAATATC
                      ____________________________________________________________
consensus             TGACATCAAGTTTCATCAATGTGTTCGCTTGGCCCGATTTGAAAATGATCGAACAATATC
 
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rJMSF045D04+          CTTCATACCTCCTGATGGATCTTTTGATCTCATGACCTACAGACTCACTACTCAGGTAAA
                      ____________________________________________________________
consensus             CTTCATACCTCCTGATGGATCTTTTGATCTCATGACCTACAGACTCACTACTCAGGTAAA
 
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rJMSF045D04+          GCCTTTGATATGGGTAGAAGCTCAAGTGGAAAGACACTCTAGGAGCCGCATAGAATTTAT
                      ____________________________________________________________
consensus             GCCTTTGATATGGGTAGAAGCTCAAGTGGAAAGACACTCTAGGAGCCGCATAGAATTTAT
 
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rJMSF045D04+          GGTGAAAGCACGGAGCCAATTTAAAGAACGCAGCACTGCAGGTAATGTTGAGATTGAGGT
                      ____________________________________________________________
consensus             GGTGAAAGCACGGAGCCAATTTAAAGAACGCAGCACTGCAGGTAATGTTGAGATTGAGGT
 
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rJMSF045D04+          ACCTGTACCAGTTGATGCTACTAATCCAAATGTCCGCACATCCATGGGATCATCTACTTA
JMFF002J14-                                               CACATCCATGGGATCATCTACTTA
rJMFF002J14+                                              CACATCCATGGGATCATCTACTTA
JMFF023J11-                                               CACATCCATGGGATCATCTACTTA
rJMFF023J11+                                              CACATCCATGGGATCATCTACTTA
                      ____________________________________________________________
consensus             ACCTGTACCAGTTGATGCTACTAATCCAAATGTCCGCACATCCATGGGATCATCTACTTA
 
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rJMSF045D04+          TGCTCCTGAAAAGGATGCATTGATTTGGAAAATCAAATCTTTTCCAGGTGGCAAGGAATA
JMFF002J14-           TGCTCCTGAAAAGGATGCATTGATTTGGAAAATCAAATCTTTTCCAGGTGGCAAGGAATA
rJMFF002J14+          TGCTCCTGAAAAGGATGCATTGATTTGGAAAATCAAATCTTTTCCAGGTGGCAAGGAATA
JMFF023J11-           TGCTCCTGAAAAGGATGCATTGATTTGGAAAATCAAATCTTTTCCAGGTGGCAAGGAATA
rJMFF023J11+          TGCTCCTGAAAAGGATGCATTGATTTGGAAAATCAAATCTTTTCCAGGTGGCAAGGAATA
                      ____________________________________________________________
consensus             TGCTCCTGAAAAGGATGCATTGATTTGGAAAATCAAATCTTTTCCAGGTGGCAAGGAATA
 
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rJMSF045D04+          TATGCTGAGAGCAGAGTTTCGTCTTCCCAGTATTACCTCTGAGGAAACAACCCCTGAAAG
JMFF002J14-           TATGCTGAGAGCAGAGTTTCGTCTTCCCAGTATTACCTCTGAGGAAACAACCCCTGAAAG
rJMFF002J14+          TATGCTGAGAGCAGAGTTTCGTCTTCCCAGTATTACCTCTGAGGAAACAACCCCTGAAAG
JMFF023J11-           TATGCTGAGAGCAGAGTTTCGTCTTCCCAGTATTACCTCTGAGGAAACAACCCCTGAAAG
rJMFF023J11+          TATGCTGAGAGCAGAGTTTCGTCTTCCCAGTATTACCTCTGAGGAAACAACCCCTGAAAG
                      ____________________________________________________________
consensus             TATGCTGAGAGCAGAGTTTCGTCTTCCCAGTATTACCTCTGAGGAAACAACCCCTGAAAG
 
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rJMSF045D04+          AAAAGCTCCTATAAGGGTGAAGTTTGAAATACCATATTTTACTGTTTCAGGAATACAAGT
JMFF002J14-           AAAAGCTCCTATAAGGGTGAAGTTTGAAATACCATATTTTACTGTTTCAGGAATACAAGT
rJMFF002J14+          AAAAGCTCCTATAAGGGTGAAGTTTGAAATACCATATTTTACTGTTTCAGGAATACAAGT
JMFF023J11-           AAAAGCTCCTATAAGGGTGAAGTTTGAAATACCATATTTTACTGTTTCAGGAATACAAGT
rJMFF023J11+          AAAAGCTCCTATAAGGGTGAAGTTTGAAATACCATATTTTACTGTTTCAGGAATACAAGT
                      ____________________________________________________________
consensus             AAAAGCTCCTATAAGGGTGAAGTTTGAAATACCATATTTTACTGTTTCAGGAATACAAGT
 
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rJMSF045D04+          TCGATATTTGAAGATCATTGAAAAAAGTGGGTACCAGGCTCTTCCTTGGGTGAGATATAT
JMFF002J14-           TCGATATTTGAAGATCATTGAAAAAAGTGGGTACCAGGCTCTTCCTTGGGTGAGATATAT
rJMFF002J14+          TCGATATTTGAAGATCATTGAAAAAAGTGGGTACCAGGCTCTTCCTTGGGTGAGATATAT
JMFF023J11-           TCGATATTTGAAGATCATTGAAAAAAGTGGGTACCAGGCTCTTCCTTGGGTGAGATATAT
rJMFF023J11+          TCGATATTTGAAGATCATTGAAAAAAGTGGGTACCAGGCTCTTCCTTGGGTGAGATATAT
                      ____________________________________________________________
consensus             TCGATATTTGAAGATCATTGAAAAAAGTGGGTACCAGGCTCTTCCTTGGGTGAGATATAT
 
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rJMSF045D04+          CACTATGGCTGGCGAATACGAGTTAAGACTGATGTAAAAGCTGGCTGGTCCCTCCCTTTG
JMFF002J14-           CACTATGGCTGGCGAATACGAGTTAAGACTGATGTAAAAGCTGGCTGGTCCCTCCCTTTG
rJMFF002J14+          CACTATGGCTGGCGAATACGAGTTAAGACTGATGTAAAAGCTGGCTGGTCCCTCCCTTTG
JMFF023J11-           CACTATGGCTGGCGAATACGAGTTAAGACTGATGTAAAAGCTGGCTGGTCCCTCCCTTTG
rJMFF023J11+          CACTATGGCTGGCGAATACGAGTTAAGACTGATGTAAAAGCTGGCTGGTCCCTCCCTTTG
                      ____________________________________________________________
consensus             CACTATGGCTGGCGAATACGAGTTAAGACTGATGTAAAAGCTGGCTGGTCCCTCCCTTTG
 
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rJMSF045D04+          TTGTTACCGGAGCCATTGAAGTTTTTGTATAACATTTTTAATCGGAC             
JMFF002J14-           TTGTTACCGGAGCCATTGAAGTTTTTGTATAACATTTTTAATCGGACTGAGCTGCCTCCT
rJMFF002J14+          TTGTTACCGGAGCCATTGAAGTTTTTGTATAACATTTTTAATCGGACTGAGCTGCCTCCT
JMFF023J11-           TTGTTACCGGAGCCATTGAAGTTTTTGTATAACATTTTTAATCGGACTGAGCTGCCTCCT
rJMFF023J11+          TTGTTACCGGAGCCATTGAAGTTTTTGTATAACATTTTTAATCGGACTGAGCTGCCTCCT
                      ____________________________________________________________
consensus             TTGTTACCGGAGCCATTGAAGTTTTTGTATAACATTTTTAATCGGACTGAGCTGCCTCCT
 
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JMFF002J14-           GAAATTAATGGTTGTTGTGATGGTTTTTAATGAAACAATATAATCTCTTGCACATTTTTT
rJMFF002J14+          GAAATTAATGGTTGTTGTGATGGTTTTTAATGAAACAATATAATCTCTTGCACATTTTTT
JMFF023J11-           GAAATTAATGGTTGTTGTGATGGTTTTTAATGAAACAATATAATCTCTTGCACATTTTTT
rJMFF023J11+          GAAATTAATGGTTGTTGTGATGGTTTTTAATGAAACAATATAATCTCTTGCACATTTTTT
                      ____________________________________________________________
consensus             GAAATTAATGGTTGTTGTGATGGTTTTTAATGAAACAATATAATCTCTTGCACATTTTTT
 
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JMFF002J14-           TTTCTCTTCTAGTTTTTTAATTGTACCGATACA-TTTAAGGGTTGTGTCAAAGGAGTTTT
rJMFF002J14+          TTTCTCTTCTAGTTTTTTAATTGTACCGATACA-TTTAAGGGTTGTGTCAAAGGAGTTTT
JMFF023J11-           TTTCTCTTCTAGTTTTTTAATTGTACCGATACATTTTAAGGGTTGTGTCAAAGGAGTTTT
rJMFF023J11+          TTTCTCTTCTAGTTTTTTAATTGTACCGATACA-TTTAAGGGTTGTGTCAAAGGAGTTTT
                      ____________________________________________________________
consensus             TTTCTCTTCTAGTTTTTTAATTGTACCGATACA-TTTAAGGGTTGTGTCAAAGGAGTTTT
 
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JMFF002J14-           GTTGCTTGTAACAAAACTAGTATGCGTTACCAAAGGCCATACAT                
rJMFF002J14+          GTTGCTTGTAACAAAACTAGTATGCGTTACCAAAGGCCATACATGTAAGGGTTGTTATAT
JMFF023J11-           GTTGCTTGTAACAAAACTAGTATGCGTTACCAAA                          
rJMFF023J11+          GTTGCTTGTAACAAAACTAGTATGCGTTACCAAAGGCCATACATGTAAGGGTTGTTATAT
                      ____________________________________________________________
consensus             GTTGCTTGTAACAAAACTAGTATGCGTTACCAAAGGCCATACATGTAAGGGTTGTTATAT
 
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rJMFF002J14+          TCTGATCGAGTCTTCCTTTCCAATATGTTACGTTGGCTATCT                  
rJMFF023J11+          TCTGATCGAGTCTTCCTTTCCAATATGTTACGTTGGCTATCTATTTTGATTACATTACAT
                      ____________________________________________________________
consensus             TCTGATCGAGTCTTCCTTTCCAATATGTTACGTTGGCTATCTATTTTGATTACATTACAT