Contig 005414:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF023D22+                                                     TCACCTCAGTTTACCCA
                      ____________________________________________________________
consensus                                                        TCACCTCAGTTTACCCA
 
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rJMFF023D22+          AAAGCTCCGAGGAGTTATCGTCCATATTGCAGGATTCTGTGCCTTGCAGGGTCCGGGCAA
                      ____________________________________________________________
consensus             AAAGCTCCGAGGAGTTATCGTCCATATTGCAGGATTCTGTGCCTTGCAGGGTCCGGGCAA
 
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rJMFF023D22+          AGAGAGGTTGCGCTACTCACCCTCGCAGCATTGCCGAGAGGGTTAGAAGAACTNGAATAA
                      ____________________________________________________________
consensus             AGAGAGGTTGCGCTACTCACCCTCGCAGCATTGCCGAGAGGGTTAGAAGAACTNGAATAA
 
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rJMSF012P18+                                                                   GGT
rJMFF023D22+          GCGACAGAATGAGGAAGCTGCAAGAGCTCGTCCCGAACATGGACAAGGTAAAACCTATAT
                      ____________________________________________________________
consensus             GCGACAGAATGAGGAAGCTGCAAGAGCTCGTCCCGAACATGGACAAGGTAAAACCTATGT
 
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rJMSF012P18+          TAGAAGAACTCGAATAAGCGACAGAATG--AGGAAGCTGCAAGAGCTCGTCCCG----AA
rJMFF023D22+          TTTATCAACGCGATATATCGTCGTAATGTATGGAAGGTTAAGTTACGCGTTGCGTTTCGA
                      ____________________________________________________________
consensus             TTTATGAACTCGATTTATCGTCGTAATGTATGGAAGGTTCAGTTGCTCGTTGCGTTTCGA
 
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rJMSF012P18+          CATGGACAAGCAAACAAACNCAGCAGATATGTTGGACCTGGCAGTGGATTACNTTAAAGA
rJMFF023D22+          TGTTTGACAGCAAACAAACACAGCAGATATGTTGGACCTGGCAGTGGATTACATTAAAGA
                      ____________________________________________________________
consensus             TGTTTGCCAGCAAACAAACACAGCAGATATGTTGGACCTGGCAGTGGATTACATTAAAGA
 
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rJMSF012P18+          TCTAGAGCAGAAAGTGAAGGTTTATCTTATAAGTCAATTGTGTCACATTATTCCCNCCAT
rJMFF023D22+          TNTAGAGCAGAAAGTGAAGGTTTATNTTATAAGTCAATTGTGTCACATTATTCCCNCCAT
                      ____________________________________________________________
consensus             TCTAGAGCAGAAAGTGAAGGTTTATCTTATAAGTCAATTGTGTCACATTATTCCCNCCAT
 
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rJMSF012P18+          ATTNTTAGACTAACACACTTTTTTTTTTATCTTTCCAGAGGTTAGCTGATAATCGTGCCA
rJMFF023D22+          ATTNTTAGACTAACACACTTTTTTTTTTATCTTTCCAGAGGTTAGCTGATAATCGTGCCA
                      ____________________________________________________________
consensus             ATTNTTAGACTAACACACTTTTTTTTTTATCTTTCCAGAGGTTAGCTGATAATCGTGCCA
 
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rJMSF012P18+          AGTGTAGATGCTCGAATAAGTAGTAGGGCAGGGATGTACCGATGAATGTAACGTGGAAAG
rJMFF023D22+          AGTGTAGATGCTCGAATAAGTAGTAGGGCAGGGATGTACCGATGAATGTAACGTGGAAAG
                      ____________________________________________________________
consensus             AGTGTAGATGCTCGAATAAGTAGTAGGGCAGGGATGTACCGATGAATGTAACGTGGAAAG
 
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rJMSF012P18+          TTGATGAACATTGTGGGATTCCTCCTGGCACTAAATTAATCACAGATCAAAAGAAGAAAA
rJMFF023D22+          TTGATGAACATTGTGGGATTCCTCCTGGCACTAAATTAATCACAGATCAAAAGAAGAAAA
                      ____________________________________________________________
consensus             TTGATGAACATTGTGGGATTCCTCCTGGCACTAAATTAATCACAGATCAAAAGAAGAAAA
 
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rJMSF012P18+          TGGGATGGGAGTGCCACAAAAACAATTTCATTTGATGTAACATATGAAGCGCTGTTGAAC
rJMFF023D22+          TGGGATGGGAGTGCCACAAAAACAATTTCATTTGATGTAACATATGAAGCGCTGTTGAAC
                      ____________________________________________________________
consensus             TGGGATGGGAGTGCCACAAAAACAATTTCATTTGATGTAACATATGAAGCGCTGTTGAAC
 
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rJMSF012P18+          ATAAAAGCATTAATGTTTGTGTTGGG                                  
rJMFF023D22+          ATAAAAGCATTAATGTTTGTGTTGGGTGTACCCCTCTTTTTGTCCATAAATAANAAAAGA
                      ____________________________________________________________
consensus             ATAAAAGCATTAATGTTTGTGTTGGGTGTACCCCTCTTTTTGTCCATAAATAANAAAAGA