Contig 005413:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023A22Sequence518005413 (4)ref|XP_006351959.1|8e-24PREDICTED: MYB-like transcription factor ETC1-like [Solanum tuberosum]668005413 (4)ref|XP_006351959.1|2e-23PREDICTED: MYB-like transcription factor ETC1-like [Solanum tuberosum]
JMSF016C11Sequence512005413 (4)ref|XP_006351959.1|1e-24PREDICTED: MYB-like transcription factor ETC1-like [Solanum tuberosum]625005413 (4)ref|XP_006351959.1|3e-24PREDICTED: MYB-like transcription factor ETC1-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF016C11-            GACGTTGTTTGGGCTTCCTTCGATCTATCTGTTCGATCCTTTTTAGGATTTCTACTGCA
JMFF023A22-             ACGTTGTTTGGGCTTCCTTCGATCTATCTGTTCGATCCTTTTTACGATTTCTACTGCA
rJMSF016C11+            ACGTTGTTTGGGCTTCCTTCGATCTATCTGTTCGATCCTTTTTAGGATTTCTACTGCA
rJMFF023A22+                                                              CTACTGCA
                      ____________________________________________________________
consensus              GACGTTGTTTGGGCTTCCTTCGATCTATCTGTTCGATCCTTTTTAGGATTTCTACTGCA
 
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JMSF016C11-           ACTTCCTTCCATGGCAGATTTGGATAATTCCAGTACCTGTGGAGAAGCAGAAGCTTGTGT
JMFF023A22-           ACTTCCTTCCNTGGCAGATTTGGATAATTCCAGTACCTGTGGAGAAGCAGAAGCTTGTGT
rJMSF016C11+          ACTTCCTTCCATGGCAGATTTGGATAATTCCAGTACCTGTGGAGAAGCAGAAGCTTGTGT
rJMFF023A22+          ACTTCCTTCCATGGCAGATTTGGATAATTCCAGTACCTGTGGAGAAGCAGAAGCTTGTGT
                      ____________________________________________________________
consensus             ACTTCCTTCCATGGCAGATTTGGATAATTCCAGTACCTGTGGAGAAGCAGAAGCTTGTGT
 
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JMSF016C11-           GGAAATTACAGAAGTGGAGGTCACTAGCCAAGATTCAAATAAGCTAGTTTTCTCGGTGGA
JMFF023A22-           GGAAATTACAGAAGTGGAGGTCACTAGCCAAGATTCAAATAAGCTAGTTTTCTCGGTGGA
rJMSF016C11+          GGAAATTACAGAAGTGGAGGTCACTAGCCAAGATTCAAATAAGCTAGTTTTCTCGGTGGA
rJMFF023A22+          GGAAATTACAGAAGTGGAGGTCACTAGCCAAGATTCAAATAAGCTAGTTTTCTCGGTGGA
                      ____________________________________________________________
consensus             GGAAATTACAGAAGTGGAGGTCACTAGCCAAGATTCAAATAAGCTAGTTTTCTCGGTGGA
 
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JMSF016C11-           TGAGGAAGCTCTGGTAGTCAGAATGTATAACTTGGTGGGAGAGAGGTGGTCACTAATTGC
JMFF023A22-           TGAGGAAGCTCTGGTAGTCAGAATGTATAACTTGGTGGGAGAGAGGTGGTCACTAATTGC
rJMSF016C11+          TGAGGAAGCTCTGGTAGTCAGAATGTATAACTTGGTGGGAGAGAGGTGGTCACTAATTGC
rJMFF023A22+          NGAGGAAGCTCTGGTAGTCAGAATGTATAACTTGGTGGGAGAGAGGTGGTCACTAATTGC
                      ____________________________________________________________
consensus             TGAGGAAGCTCTGGTAGTCAGAATGTATAACTTGGTGGGAGAGAGGTGGTCACTAATTGC
 
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JMSF016C11-           TGGGAGAATCCCAGGAAGAAGTGCGGAGGAAATTGAGAAGTACTGGAACTCAACACACTC
JMFF023A22-           TGGGAGAATCCCAGGAAGAAGTGCGGAGGAAATTGAGAAGTACTGGAACTCNACACACTC
rJMSF016C11+          TGGGAGAATCCCAGGAAGAAGTGCGGAGGAAATTGAGAAGTACTGGAACTCAACACACTC
rJMFF023A22+          TGGGAGAATCCCAGGAAGAAGTGCGGAGGAAATTGAGAAGTACTGGAACTCAACACACTC
                      ____________________________________________________________
consensus             TGGGAGAATCCCAGGAAGAAGTGCGGAGGAAATTGAGAAGTACTGGAACTCAACACACTC
 
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JMSF016C11-           AACTAGTCATCAATGAGAAAATAAGGTTTGATCTAGATTGTGGGCAAGAATAAAAGGTTT
JMFF023A22-           AACTAGTCATCAATGAGAAAATAAGGTTTGATCTAGATTGTGGGCAAGAATAAAAGGTTT
rJMSF016C11+          AACTAGTCATCAATGAGAAAATAAGGTTTGATCTAGATTGTGGGCAAGAATAAAAGGTTT
rJMFF023A22+          AACTAGTCATCAATGAGAAAATAAGGTTTGATCTAGATTGTGGGCAAGAATAAAAGGTTT
                      ____________________________________________________________
consensus             AACTAGTCATCAATGAGAAAATAAGGTTTGATCTAGATTGTGGGCAAGAATAAAAGGTTT
 
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JMSF016C11-           GCAAGTTAAAATTAATTAATATTAGTAAAATGTTGGCGATGGCCACCGAAAGCAAAATAA
JMFF023A22-           GCAAGTTAAAATTAATTAATATTANTAAAATGTTGGCGATGGCCACCGAAAGCAAAATAA
rJMSF016C11+          GCAAGTTAAAATTAATTAATATTAGTAAAATGTTGGCGATGGCCACCGAAAGCAAAATAA
rJMFF023A22+          GCAAGTTAAAATTAATTAATATTAGTAAAATGTTGGCGATGGCCACCGAAAGCAAAATAA
                      ____________________________________________________________
consensus             GCAAGTTAAAATTAATTAATATTAGTAAAATGTTGGCGATGGCCACCGAAAGCAAAATAA
 
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JMSF016C11-           TGTTATGCCTGGGGCTATGTATGTACAGTTAAGAGGATTGCGTATTTATTATGATAAGTT
JMFF023A22-           TGTTATGCCTGGGGCTATGTATGTACAGTTAAGAGGATTGCGTATTTATTATGATAAGTT
rJMSF016C11+          TGTTATGCCTGGGGCTATGTATGTACAGTTAAGAGGATTGCGTATTTATTATGATAAGTT
rJMFF023A22+          TGTTATGCCTGGGGCTATGTATGTACAGTTAAGAGGATTGCGTATTTATTATGATAAGTT
                      ____________________________________________________________
consensus             TGTTATGCCTGGGGCTATGTATGTACAGTTAAGAGGATTGCGTATTTATTATGATAAGTT
 
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JMSF016C11-           TCATGGGATAATGTATTTGTTATTTATCATTTT                           
JMFF023A22-           TCATGGGATAATGTATTTGTTATTTATCATTTT                           
rJMSF016C11+          TCATGGGATAATGTATTTGTTATTTATCATTTTTATTTCTCAAGTTTAGAGAAATATTAG
rJMFF023A22+          TCATGGGATAATGTATTTGTTATTTATCATTTTTATTTCTCAAGTTTAGAGAAATANTAG
                      ____________________________________________________________
consensus             TCATGGGATAATGTATTTGTTATTTATCATTTTTATTTCTCAAGTTTAGAGAAATATTAG
 
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rJMSF016C11+          AATCGTGTATAAATTAGTAGAGATGGCTATTGAGCATTATGAAATTAAGTAGCCAAACTG
rJMFF023A22+          AATCGTGTATAAATTAGTAGAGATGGCTATTGAGCATTATGAAATTAAGTAGCCAAACTG
                      ____________________________________________________________
consensus             AATCGTGTATAAATTAGTAGAGATGGCTATTGAGCATTATGAAATTAAGTAGCCAAACTG
 
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rJMSF016C11+          CCTAAGATGGATTAGTTATCCTCGTG                                  
rJMFF023A22+          CCTAAGATGGATTAGTTATCCTCGTGTTTTCTNGTCTAAGATTTTAAGAGAGGATAAGGT
                      ____________________________________________________________
consensus             CCTAAGATGGATTAGTTATCCTCGTGTTTTCTNGTCTAAGATTTTAAGAGAGGATAAGGT
 
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rJMFF023A22+          TGGTCTNAACATANGAGTTAGTCTAGATTTCTGTCTAGAGNGAAAATCTAAGTTTTATCG
                      ____________________________________________________________
consensus             TGGTCTNAACATANGAGTTAGTCTAGATTTCTGTCTAGAGNGAAAATCTAAGTTTTATCG