Contig 005408:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021M19Sequence530005408 (2)ref|XP_009589972.1|7e-67PREDICTED: DNA repair helicase XPB1, partial [Nicotiana tomentosiformis]
JMSF010E20Sequence454009228 (2)ref|XP_009601664.1|1e-54PREDICTED: DNA repair helicase XPB1-like [Nicotiana tomentosiformis]698005408 (2)ref|XP_009589972.1|6e-111PREDICTED: DNA repair helicase XPB1, partial [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF010E20+                          CGGTGATAATTCTATAGATATTCCTGAAGCAAATGTTATAATAC
                      ____________________________________________________________
consensus                             CGGTGATAATTCTATAGATATTCCTGAAGCAAATGTTATAATAC
 
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rJMSF010E20+          AAATTTCATCTCATGCTGGTTCGAGACGACAGGAAGCACAACGTCTTGGGCGTATTCTTA
                      ____________________________________________________________
consensus             AAATTTCATCTCATGCTGGTTCGAGACGACAGGAAGCACAACGTCTTGGGCGTATTCTTA
 
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rJMSF010E20+          GGGCAAAGGGACGTCTTCAAGACAGGATGGCGGGAGGTAAAGAGGAGTATAATGCTTTCT
                      ____________________________________________________________
consensus             GGGCAAAGGGACGTCTTCAAGACAGGATGGCGGGAGGTAAAGAGGAGTATAATGCTTTCT
 
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rJMSF010E20+          TTTACTCTCTTGTATCAACAGATACTCATGAGATGTATTACTCAACTAAAAGACAACAAT
rJMFF021M19+                    TGTATCAACAGATACTCATGAGATGTATTACTCAACTAAAAGACAACAAT
                      ____________________________________________________________
consensus             TTTACTCTCTTGTATCAACAGATACTCATGAGATGTATTACTCAACTAAAAGACAACAAT
 
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rJMSF010E20+          TCTTGATTGATCAAGGTTATAGCTTCAAGGTCATCACAAGCTTGCCACCTTCTGATTCAG
rJMFF021M19+          TCTTGATTGATCAAGGTTATAGCTTCAAGGTCATCACAAGCTTGCCACCTTCTGATTCAG
                      ____________________________________________________________
consensus             TCTTGATTGATCAAGGTTATAGCTTCAAGGTCATCACAAGCTTGCCACCTTCTGATTCAG
 
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rJMSF010E20+          GACCTGAATTGAATTACCATCGTCTTGATGACCAACTTTCGCTTCTTGGAAAAGTACTAA
rJMFF021M19+          GACCTGAATTGAATTACCATCGTCTTGATGACCAACTTTCGCTTCTTGGAAAAGTACTAA
                      ____________________________________________________________
consensus             GACCTGAATTGAATTACCATCGTCTTGATGACCAACTTTCGCTTCTTGGAAAAGTACTAA
 
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rJMSF010E20+          GTGCTGGTGACGATGCTGTTGGTTTGGAGCAACTGGAAGAAGATACAGATGATATAGCCC
rJMFF021M19+          GTGCTGGTGACGATGCTGTTGGTTTGGAGCAACTGGAAGAAGATACAGATGATATAGCCC
                      ____________________________________________________________
consensus             GTGCTGGTGACGATGCTGTTGGTTTGGAGCAACTGGAAGAAGATACAGATGATATAGCCC
 
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rJMSF010E20+          TTCAGAGAGCCCGTCGCACCATGGGATCTATGAGCGCAATGTCAGGAGCACACGGGATGG
rJMFF021M19+          TTCAGAGAGCCCGTCGCACCATGGGATCTATGAGCGCAATGTCAGGAGCACACGGGATGG
                      ____________________________________________________________
consensus             TTCAGAGAGCCCGTCGCACCATGGGATCTATGAGCGCAATGTCAGGAGCACACGGGATGG
 
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rJMSF010E20+          TTTATATGGAATAC                                              
rJMFF021M19+          TTTATATGGNATACCATAATGGAAAGAGGGTGATGCAAAAGAGCAAACCAAAAGATCCAG
                      ____________________________________________________________
consensus             TTTATATGGAATACCATAATGGAAAGAGGGTGATGCAAAAGAGCAAACCAAAAGATCCAG
 
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rJMFF021M19+          CCAAGAGACACCATTTATTCAAGAAGCGTTTTGGCTGAGTTGAGTGTATCCAAGAACTTG
                      ____________________________________________________________
consensus             CCAAGAGACACCATTTATTCAAGAAGCGTTTTGGCTGAGTTGAGTGTATCCAAGAACTTG
 
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rJMFF021M19+          CATCATTTAATTTTTTAGCATATTGATTTCCTGTTTTTGTGTGATTGAGTGAATATAAAT
                      ____________________________________________________________
consensus             CATCATTTAATTTTTTAGCATATTGATTTCCTGTTTTTGTGTGATTGAGTGAATATAAAT
 
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rJMFF021M19+          GCTTCCCTTATACAAGTGCAAAAATGAGAGCACTTGGAAATGGCAAGCAAAATAAGAATC
                      ____________________________________________________________
consensus             GCTTCCCTTATACAAGTGCAAAAATGAGAGCACTTGGAAATGGCAAGCAAAATAAGAATC