Contig 005402:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014A23Sequence553003119 (8)ref|XP_002313768.2|4e-41hypothetical protein POPTR_0009s12520g [Populus trichocarpa] gb|EEE87723.2| hypo795005402 (9)ref|XP_006362719.1|2e-88PREDICTED: uncharacterized protein LOC102595504 isoform X2 [Solanum tuberosum]
JMFF019P03Sequence566003119 (8)ref|XP_009618616.1|6e-46PREDICTED: uncharacterized protein LOC104110774 isoform X1 [Nicotiana tomentosi713005402 (9)ref|XP_006362719.1|3e-51PREDICTED: uncharacterized protein LOC102595504 isoform X2 [Solanum tuberosum]
JMFF021N11Sequence549003119 (8)ref|XP_002313768.2|2e-41hypothetical protein POPTR_0009s12520g [Populus trichocarpa] gb|EEE87723.2| hypo750005402 (9)ref|XP_006362719.1|7e-87PREDICTED: uncharacterized protein LOC102595504 isoform X2 [Solanum tuberosum]
JMFF029M10Sequence588003119 (8)ref|XP_002313768.2|2e-47hypothetical protein POPTR_0009s12520g [Populus trichocarpa] gb|EEE87723.2| hypo687005402 (9)ref|XP_006362719.1|3e-51PREDICTED: uncharacterized protein LOC102595504 isoform X2 [Solanum tuberosum]
JMFF040A24Sequence609003119 (8)ref|XP_002313768.2|1e-51hypothetical protein POPTR_0009s12520g [Populus trichocarpa] gb|EEE87723.2| hypo688005402 (9)ref|XP_006362719.1|3e-51PREDICTED: uncharacterized protein LOC102595504 isoform X2 [Solanum tuberosum]
JMFF043K19Sequence620003119 (8)ref|XP_009618616.1|9e-52PREDICTED: uncharacterized protein LOC104110774 isoform X1 [Nicotiana tomentosi618005402 (9)ref|XP_006362719.1|8e-35PREDICTED: uncharacterized protein LOC102595504 isoform X2 [Solanum tuberosum]
JMFN035A14Sequence545005402 (9)ref|XP_006362719.1|2e-22PREDICTED: uncharacterized protein LOC102595504 isoform X2 [Solanum tuberosum]
JMFN035C14Sequence545005402 (9)ref|XP_006362719.1|2e-22PREDICTED: uncharacterized protein LOC102595504 isoform X2 [Solanum tuberosum]
JMSF052G12Sequence702003119 (8)ref|XP_009618616.1|7e-65PREDICTED: uncharacterized protein LOC104110774 isoform X1 [Nicotiana tomentosi935005402 (9)ref|XP_006362719.1|8e-107PREDICTED: uncharacterized protein LOC102595504 isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF052G12+                                                       AGGAGGACNTGAGAA
                      ____________________________________________________________
consensus                                                          AGGAGGACNTGAGAA
 
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rJMFF014A23+                                                            AGCGTAGCGG
rJMSF052G12+          GACTTTATGGGTTCCCGCAAGATTGTGTTGTGTGCACTGGGACTACGGATAGCGTAGCGG
                      ____________________________________________________________
consensus             GACTTTATGGGTTCCCGCAAGATTGTGTTGTGTGCACTGGGACTACGGATAGCGTAGCGG
 
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rJMFF021N11+                                           AAAGCGGTTACATCTTTGGGTTCAACT
rJMFF014A23+          CAGTCATAGCAACACGTGCTTCCCCANCCTGGAAAAGCGGTTACATCTTTGGGTTCAACT
rJMSF052G12+          CAGTCATAGCAACACGTGCTT-CCCAACCTGGAAAAGCGGTTACATCTTTGGGTTCAACT
                      ____________________________________________________________
consensus             CAGTCATAGCAACACGTGCTTCCCCAACCTGGAAAAGCGGTTACATCTTTGGGTTCAACT
 
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rJMFF021N11+          GTAGCTTTAAAACTACTAAGTACTAAAAAGGTGGAAGATGTTCGGTTTGGAGTGTATAGC
rJMFF014A23+          GTAGCTTTAAAACTACTAAGTACTAAAAAGGTGGAAGATGTTCGGTTTGGAGTGTATAGC
rJMSF052G12+          GTAGCTTTAAAACTACTAAGTACTAAAAAGGTGGAAGATGTTCGGTTTGGAGTGTATAGC
                      ____________________________________________________________
consensus             GTAGCTTTAAAACTACTAAGTACTAAAAAGGTGGAAGATGTTCGGTTTGGAGTGTATAGC
 
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rJMFF021N11+          CACCGGCTCGGTGATAAATGGCTCGTCGGAGGGGCTTCCAACACCGGCGGAGCTGTTCTA
rJMFF014A23+          CACCGGCTCGGTGATAAATGGCTCGTCGGAGGGGCTTCCAACACCGGCGGAGCTGTTCTA
rJMSF052G12+          CACCGGCTCGGTGATAAATGGCTCGTCGGAGGGGCTTCCAACACCGGCGGAGCTGTTCTA
                      ____________________________________________________________
consensus             CACCGGCTCGGTGATAAATGGCTCGTCGGAGGGGCTTCCAACACCGGCGGAGCTGTTCTA
 
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rJMFF021N11+          CGGCATCTCTTCAGTGACGAGGAGCTTTATAAATTGAGTGAGCGGATCAATCCCCTTGTG
rJMFF014A23+          CGGCATCTCTTCAGTGACGAGGAGCTTTATAAATTGAGTGAGCGGATCAATCCCCTTGTG
rJMSF052G12+          CGGCATCTCTTCAGTGACGAGGAGCTTTATAAATTGAGTGAGCGGATCAATCCCCTTGTG
rJMFF040A24+                   TTCAGTGACGAGGAGCTTTATAAATTGAGTGAGCGGATCAATCCCCTTGTG
rJMFF029M10+                   TTCAGTGACGAGGAGCTTTATAAATTGAGTGAGCGGATCAATCCCCTTGTG
rJMFF019P03+                 TCTTCAGTGACGAGGAGCTTTATAAATTGAGTGAGCGGATCAATCCCCTTGTG
                      ____________________________________________________________
consensus             CGGCATCTCTTCAGTGACGAGGAGCTTTATAAATTGAGTGAGCGGATCAATCCCCTTGTG
 
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rJMFF021N11+          CCCTCCCCTCTTGATTACTATCCCTTGAAAGTACCCGGTGAAAGATTCCCCTTGGCAGAT
rJMFF014A23+          CCCTCCCCTCTTGATTACTATCCCTTGAAAGTACCCGGTGAAAGATTCCCCTTGGCAGAT
rJMSF052G12+          CCCTCCCCTCTTGATTACTATCCCTTGAAAGTACCCGGTGAAAGATTCCCCTTGGCAGAT
rJMFF040A24+          CCCTCCCCTCTTGATTACTATCCCTTGAAAGTACCCGGTGAAAGATTCCCCTTGGCAGAT
rJMFF029M10+          CCCTCCCCTCTTGATTACTATCCCTTGAAAGTACCCGGTGAAAGATTCCCCTTGGCAGAT
rJMFF043K19+                                                   AAGATTCCCCTTGGCAGAT
rJMFF019P03+          CCCTCCCCTCTTGATTACTATCCCTTGAAAGTACCCGGTGAAAGATTCCCCTTGGCAGAT
                      ____________________________________________________________
consensus             CCCTCCCCTCTTGATTACTATCCCTTGAAAGTACCCGGTGAAAGATTCCCCTTGGCAGAT
 
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rJMFF021N11+          CCAACAAAAGAGCCTAGGATGCACCCGCGGCCGGAAGATGACGTGGAATACTTGTATGGT
rJMFF014A23+          CCAACAAAAGAGCCTAGGATGCACCCGCGGCCGGAAGATGACGTGGAATACTTGTATGGT
rJMSF052G12+          CCAACAAAAGAGCCTAGGATGCACCCGCGGCCGGAAGATGACGTGGAATACTTGTATGGT
rJMFF040A24+          CCAACAAAAGAGCCTAGGATGCACCCGCGGCCGGAAGATGACGTGGAATACTTGTATGGT
rJMFF029M10+          CCAACAAAAGAGCCTAGGATGCACCCGCGGCCGGAAGATGACGTGGAATACTTGTATGGT
rJMFF043K19+          CCAACAAAAGAGCCTAGGATGCACCCGCGGCCGGAAGATGACGTGGAATACTTGTATGGT
JMFN035C14-                                                        GAATACTTGTATGGT
JMFN035A14-                                                        GAATACTTGTATGGT
rJMFF019P03+          CCAACAAAAGAGCCTAGGATGCACCCGCGGCCGGAAGATGACGTGGAATACTTGTATGGT
                      ____________________________________________________________
consensus             CCAACAAAAGAGCCTAGGATGCACCCGCGGCCGGAAGATGACGTGGAATACTTGTATGGT
 
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rJMFF021N11+          ATTCTTGAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
rJMFF014A23+          ATTCTTGAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
rJMSF052G12+          ATTCTTGAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
rJMFF040A24+          ATTCTTGAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
rJMFF029M10+          ATTCTTGAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
rJMFF043K19+          ATTCTGNAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
JMFN035C14-           ATTCTTGAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
JMFN035A14-           ATTCTTGAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
rJMFF019P03+          ATTCTTGAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
                      ____________________________________________________________
consensus             ATTCTTGAATCGATGGCTCGTATTGAGGCAAAGGGGTACAGTTTGCTAAAGAGTCTTGGG
 
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rJMFF021N11+          GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
rJMFF014A23+          GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
rJMSF052G12+          GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
rJMFF040A24+          GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
rJMFF029M10+          GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
rJMFF043K19+          GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
JMFN035C14-           GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
JMFN035A14-           GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
rJMFF019P03+          GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
                      ____________________________________________________________
consensus             GCAGCCCCGGTTGAGGAAATACTGACATCTGGAGGCGGGTCAAGGAATGAAATATGGACA
 
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rJMFF021N11+          AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
rJMFF014A23+          AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
rJMSF052G12+          AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
rJMFF040A24+          AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
rJMFF029M10+          AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
rJMFF043K19+          AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
JMFN035C14-           AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
JMFN035A14-           AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
rJMFF019P03+          AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
                      ____________________________________________________________
consensus             AAGATCCGAGCGAGGGTCCTGGGTATACCGGTACGCTGCGCAGATCAAACTGAAGCTGCC
 
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rJMFF021N11+          TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
rJMFF014A23+          TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
rJMSF052G12+          TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
rJMFF040A24+          TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
rJMFF029M10+          TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
rJMFF043K19+          TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
JMFN035C14-           TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
JMFN035A14-           TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
rJMFF019P03+          TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
                      ____________________________________________________________
consensus             TATGGAGCCGCATTGCTAGCACTAAAAGGTGCCTGTCAAAACAAGGTTCTTCTAACTCCG
 
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rJMFF021N11+          TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
rJMFF014A23+          TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
rJMSF052G12+          TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
rJMFF040A24+          TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
rJMFF029M10+          TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
rJMFF043K19+          TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
JMFN035C14-           TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
JMFN035A14-           TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
rJMFF019P03+          TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
                      ____________________________________________________________
consensus             TATTAATAAGGCTATGTCTTATAATTCTAGGCAATCAAGTTGTGTTCAAAACTGCAAAAA
 
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rJMFF021N11+          TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
rJMFF014A23+          TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
rJMSF052G12+          TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
rJMFF040A24+          TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
rJMFF029M10+          TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
rJMFF043K19+          TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
JMFN035C14-           TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
JMFN035A14-           TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
rJMFF019P03+          TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
                      ____________________________________________________________
consensus             TAAAAGGAAAAAAACGTGTGATGTTTACGCTTGTTTGCAATTTGCCAAGTTGTGATGCCG
 
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rJMFF021N11+          ACGTACAAGTATCTTGGGGTAGTGGCACAAAGCCTCTTTTGTGTTGAGCATATAATATAT
rJMFF014A23+          ACGTACAAGTATCTTGGGGTAGTGGCACAAAGCCTCTTTTGTGTTGAGCATATAATATAT
rJMSF052G12+          ACGTACAAGTATCTTGGGGTAGTGGCACAAAGCCTCTTTTGTGTTGAGCATATAATATAT
rJMFF040A24+          ACGTACAAGTATCTTGGGGTAGTGGCACAAAGCCTCTTTTGTGTTGAGCATATAATATAT
rJMFF029M10+          ACGTACAAGTATCTTGGGGTAGTGGCACAAAGC--CTTTTGTGTTGAGCATATAATATAT
rJMFF043K19+          ACGTACAAGTATCTTGGGGTAGTGGCACAAAGCCTCTTTTGTGTTGAGCATATAATATAT
JMFN035C14-           ACGTACAAGTATCTTGGGGTAGTGGCACAAAGCCTCTTTTGTGTTGAGCATATAATATAT
JMFN035A14-           ACGTACAAGTATCTTGGGGTAGTGGCACAAAGCCTCTTTTGTGTTGAGCATATAATATAT
rJMFF019P03+          ACGTACAAGTATCTTGGGGTAGTGGCACAAAGCCTCTTTTGTGTTGAGCATATAATATAT
                      ____________________________________________________________
consensus             ACGTACAAGTATCTTGGGGTAGTGGCACAAAGCCTCTTTTGTGTTGAGCATATAATATAT
 
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rJMFF021N11+          AAA                                                         
rJMFF014A23+          AAAAT                                                       
rJMSF052G12+          AAAATTAATATGCAGTTCAACTATTAGTTCAGAATTTTAGTTAAAATGGATCACATGTTT
rJMFF040A24+          AAAATTAATATGCAGTTCAACTATTAGTTCAGAATTTTAGTTAAAATGGATCACATGTTT
rJMFF029M10+          AAAATTAATATGCAGTTCAACTATTAGTTCAGAATTTTAGTTAAAATGGATCACATGTTT
rJMFF043K19+          AAAATTAATATGCAGTTCAACTATTAGTTCAGAATTTTAGTTAAAATGGATCACATGTTT
JMFN035C14-           AAAATTAATATGCAGTTCAACTATTAGTTCAGAATTTTAGTTAAAATGGATCACATGTTT
JMFN035A14-           AAAATTAATATGCAGTTCAACTATTAGTTCAGAATTTTAGTTAAAATGGATCACATGTTT
rJMFF019P03+          AAAATTAATATGCAGTTCAACTATTAGTTCAGAATTTTAGTTAAAATGGATCACATGTTT
                      ____________________________________________________________
consensus             AAAATTAATATGCAGTTCAACTATTAGTTCAGAATTTTAGTTAAAATGGATCACATGTTT
 
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rJMSF052G12+          TAATTTGTATTAGAGTCAATT                                       
rJMFF040A24+          TAATTTGTATTAGAGTCAATTTCATGTGAAATTTCAA                       
rJMFF029M10+          TAATTTGTATTAGAGTCAATTTCATGTGAAATTTCAAT                      
rJMFF043K19+          TAATTTGTATTAGAGTCAATTTCATGTGAAATTTCAATGTAATTGCC             
JMFN035C14-           TAATTTGTATTAGAGTCAATTTCATGTGAAATTTCAATGTAATTGCC             
JMFN035A14-           TAATTTGTATTAGAGTCAATTTCATGTGAAATTTCAATGTAATTGCC             
rJMFF019P03+          TAATTTGTATTAGAGTCAATTTCATGTGAAATTTCAATGTAATTGCCCTTGTGTGGGAGT
                      ____________________________________________________________
consensus             TAATTTGTATTAGAGTCAATTTCATGTGAAATTTCAATGTAATTGCCCTTGTGTGGGAGT