Contig 005400:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018N23Sequence532005400 (4)emb|CDY64220.1|3e-13BnaAnng19250D [Brassica napus]774005400 (4)ref|XP_006466408.1|1e-50PREDICTED: homeobox-leucine zipper protein HAT22-like [Citrus sinensis]
JMFF028D03Sequence551005400 (4)emb|CDY64220.1|7e-23BnaAnng19250D [Brassica napus]706005400 (4)ref|XP_006426160.1|5e-51hypothetical protein CICLE_v10026197mg [Citrus clementina] gb|ESR39400.1| hypoth

Alignment

This contig is upended


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JMFF018N23-            ATCACCACTACAAACACCTCAAAAGTTGCATTAAAAAATAAAATGGGATTAGAGGACAT
JMFF028D03-            ATCACCACTACAAACACCTCAAAAGTTGCATTAAAAAATAAAATGGGATTAGAGGACAT
                      ____________________________________________________________
consensus              ATCACCACTACAAACACCTCAAAAGTTGCATTAAAAAATAAAATGGGATTAGAGGACAT
 
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JMFF018N23-           CTACAGCACCAGACTCACTCTCAGCCTAGGATCCGATGATCTTCATCGCCAGGTTTATCG
JMFF028D03-           CTACAGCACCAGACTCACTCTCAGCCTAGGATCCGATGATCTTCATCGCCAGGTTTATCG
                      ____________________________________________________________
consensus             CTACAGCACCAGACTCACTCTCAGCCTAGGATCCGATGATCTTCATCGCCAGGTTTATCG
 
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JMFF018N23-           GCAAAACAAGAGATCAAAGCCGCCTTCCCCGATATCCGACAACTATCTGCCGTCCCTCTC
JMFF028D03-           GCAAAACAAGAGATCAAAGCCGCCTTCCCCGATATCCGACAACTATCTGCCGTCCCTCTC
                      ____________________________________________________________
consensus             GCAAAACAAGAGATCAAAGCCGCCTTCCCCGATATCCGACAACTATCTGCCGTCCCTCTC
 
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JMFF018N23-           GCTGGGATTGCCGTGGGAAGTGAAGTTTGAAGCTATGAACGACGGGAGCACTGCGATGAT
JMFF028D03-           GCTGGGATTGCCGTGGGAAGTGAAGTTTGAAGCTATGAACGACGGGAGCACTGCGATGAT
rJMFF028D03+                                                              GCGATGAT
rJMFF018N23+               GATTGCCGTGGGAAGTGAAGTTTGAAGCTATGAACGACGGGAGCACTGCGATGAT
                      ____________________________________________________________
consensus             GCTGGGATTGCCGTGGGAAGTGAAGTTTGAAGCTATGAACGACGGGAGCACTGCGATGAT
 
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JMFF018N23-           GATGAACTGTTGCCTGCAGCAGGCTTCTCCGGCGGCGGCGCCGTCGTCGTTCTCGGACTC
JMFF028D03-           GATGAACTGTTGCCTGCAGCAGGCTTCTCCGGCGGCGGCGCCGTCGTCGTTCTCGGACTC
rJMFF028D03+          GATGAACTGTTGCCTGCAGCAGGCTTNTCCGGCGGCGGCGCCGTCGTCGTTCTCGGACTC
rJMFF018N23+          GATGAACTGTTGCCTGCAGCAGGCTTCTCCGGCGGCGGCGCCGTCGTCGTTCTCGGACTC
                      ____________________________________________________________
consensus             GATGAACTGTTGCCTGCAGCAGGCTTCTCCGGCGGCGGCGCCGTCGTCGTTCTCGGACTC
 
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JMFF018N23-           GAGTTTGAAGAGGGAACGAGAGATCAGCGGCGGCGAAGAAGATGAACTTGAGGCGGCGGA
JMFF028D03-           GAGTTTGAAGAGGGAACGAGAGATCAGCGGCGGCGAAGAAGATGAACTTGAGGCGGCGGA
rJMFF028D03+          GAGTTTGAAGAGGGAACGAGAGATCAGCGGCGGCGAAGAAGATGAACTTGAGGCGGCGGA
rJMFF018N23+          GAGTTTGAAGAGGGAACGAGAGATCAGCGGCGGCGAAGAAGATGAACTTGAGGCGGCGGA
                      ____________________________________________________________
consensus             GAGTTTGAAGAGGGAACGAGAGATCAGCGGCGGCGAAGAAGATGAACTTGAGGCGGCGGA
 
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JMFF018N23-           GAAAGGGTCTCCCTGCAGGGATGAGTACCAGGATGATGAAGAGGTTGTCGGTACGAGGAA
JMFF028D03-           GAAAGGGTCTCCCTGCAGGGATGAGTACCAGGATGATGAAGAGGTTGTCGGTACGAGGAA
rJMFF028D03+          GAAAGGGTCTCCCTGCAGGGATGAGTACCAGGATGATGAAGAGGTTGTCGGTACGAGGAA
rJMFF018N23+          GAAAGGGTCTCCCTGCAGGGATGAGTACCAGGATGATGAAGAGGTTGTCGGTACGAGGAA
                      ____________________________________________________________
consensus             GAAAGGGTCTCCCTGCAGGGATGAGTACCAGGATGATGAAGAGGTTGTCGGTACGAGGAA
 
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JMFF018N23-           GAAACTTAGGCTCACCAAACAACAGTCGATTGTCTTGGAAGACAGCTTCAAACAACACAC
JMFF028D03-           GAAACTTAGGCTCACCAAACAACAGTCGATTGTCTTGGAAGACAGCTTCAAACAACACAC
rJMFF028D03+          GAAACTTAGGCTCACCAAACAACAGTCGATTGTCTTGGAAGACAGCTTCAAACAACACAC
rJMFF018N23+          GAAACTTAGGCTCACCAAACAACAGTCGATTGTCTTGGAAGACAGCTTCAAACAACACAC
                      ____________________________________________________________
consensus             GAAACTTAGGCTCACCAAACAACAGTCGATTGTCTTGGAAGACAGCTTCAAACAACACAC
 
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JMFF018N23-           CACTCTCAATTCTAAACAGGAAGCAAGAATTGGCGAGAAGGCTAAATTTACGG       
JMFF028D03-           CACTCTCAATTCTAAACA-GAAGCAAGAATTGGCGAGAAGGCTAAATTTACGGCCGCGAC
rJMFF028D03+          CACTCTCAATTCTAAACA-GAAGCAAGAATTGGCGAGAAGGCTAAATTTACGGCCGCGAC
rJMFF018N23+          CACTCTCAATTCTAAACA-GAAGCAAGAATTGGCGAGAAGGCTAAATTTACGGCCGCGAC
                      ____________________________________________________________
consensus             CACTCTCAATTCTAAACA-GAAGCAAGAATTGGCGAGAAGGCTAAATTTACGGCCGCGAC
 
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JMFF028D03-           AAGTGGAAGTGTG                                               
rJMFF028D03+          AAGTGGAAGTGTGGTTCCAGAATCGAAGAGCGAGGACGAAACTGAAGCAGACAGAAGTGG
rJMFF018N23+          AAGTGGAAGTGTGGTTCCAGAATCGAAGAGCGAGGACGAAACTGAAGCAGACAGAAGTGG
                      ____________________________________________________________
consensus             AAGTGGAAGTGTGGTTCCAGAATCGAAGAGCGAGGACGAAACTGAAGCAGACAGAAGTGG
 
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rJMFF028D03+          ACTATGAAGTACTAAGGAAGTGCTACGAAACCCTCACGGATGAGAACAGAAGGCTGCAGA
rJMFF018N23+          ACTATGAAGTACTAAGGAAGTGCTACGAAACCCTCACGGATGAGAACAGAAGGCTGCAGA
                      ____________________________________________________________
consensus             ACTATGAAGTACTAAGGAAGTGCTACGAAACCCTCACGGATGAGAACAGAAGGCTGCAGA
 
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rJMFF028D03+          AGGAACTGCTGGAGCTCAAAGCAGCCGCCAACCAGACAACGACGGCGGCGCCGCCGTTTC
rJMFF018N23+          AGGAACTGCTGGAGCTCAAAGCAGCCGCCAACCAGACAACGACGGCGGCGCCGCCGTTTC
                      ____________________________________________________________
consensus             AGGAACTGCTGGAGCTCAAAGCAGCCGCCAACCAGACAACGACGGCGGCGCCGCCGTTTC
 
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rJMFF028D03+          ACATGGCGGCGACGCTCACCATGTGCCCTTCCTGCGAGAGGACTTACGGTGGCTCCACCG
rJMFF018N23+          ACATGGCGGCGACGCTCACCATGTGCCCTTCCTGCGAGAGGACTTACGGTGGCTCCACCG
                      ____________________________________________________________
consensus             ACATGGCGGCGACGCTCACCATGTGCCCTTCCTGCGAGAGGACTTACGGTGGCTCCACCG
 
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rJMFF028D03+          ACAGCTCTGCCAAATTTTCTATCTCGGCCGGAGGAAAATCTCACCTTTTCCGATCATTCT
rJMFF018N23+          ACAGCTCTGCCAAATTTTCTATCTCGGCCGGAGGAAAATCTCACCTTTTCCGATCATTCT
                      ____________________________________________________________
consensus             ACAGCTCTGCCAAATTTTCTATCTCGGCCGGAGGAAAATCTCACCTTTTCCGATCATTCT
 
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rJMFF028D03+          TGAATCCCTCCGAGGCTTGTTAGAAAGATCATATCAGAGGTCGACTTCTGTAAAATTATA
rJMFF018N23+          TGAATCCCTCCGAGGCTTGTTAGAAAGATCATATCAGAGGTCGACTTCTGTAAAATTATA
                      ____________________________________________________________
consensus             TGAATCCCTCCGAGGCTTGTTAGAAAGATCATATCAGAGGTCGACTTCTGTAAAATTATA
 
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rJMFF028D03+          TTATGTTTATATATGTGTAGAGAATATCGTATTGTAAAC                     
rJMFF018N23+          TTATGTTTATATATGTGTAGAGAATATCGTATTGTAAACTCGAATTGATTAATTCAAAGA
                      ____________________________________________________________
consensus             TTATGTTTATATATGTGTAGAGAATATCGTATTGTAAACTCGAATTGATTAATTCAAAGA