Contig 005399:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018L16Sequence594008081 (3)ref|XP_009779551.1|1e-88PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Nicotiana sylvestr799005399 (3)ref|XP_010240996.1|2e-116PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 [Nelumbo nucifera]
JMFN032P09Sequence639005399 (3)gb|KHG06705.1|5e-105Indole-3-acetic acid-amido synthetase GH3.6 -like protein [Gossypium arboreum]
JMSF049I01Sequence695008081 (3)ref|XP_009779551.1|3e-99PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Nicotiana sylvestr713005399 (3)ref|XP_010240996.1|2e-106PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 [Nelumbo nucifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-                                         CACGAGGTAATGCTGTTGTGACAGGTGCCA
                      ____________________________________________________________
consensus                                           CACGAGGTAATGCTGTTGTGACAGGTGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           TGTCTCAGTATATCCCTACTCTCAATTATTTTGGCAATGATCTTCCCCTCGTCAGTACCT
                      ____________________________________________________________
consensus             TGTCTCAGTATATCCCTACTCTCAATTATTTTGGCAATGATCTTCCCCTCGTCAGTACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           CGTATGCATCTTCCGAGGGTTATTTCGGTGTAAACCTTAATCCTCTTTGCAAGCCCACCG
                      ____________________________________________________________
consensus             CGTATGCATCTTCCGAGGGTTATTTCGGTGTAAACCTTAATCCTCTTTGCAAGCCCACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           AGATTGCTTATACCATCATTCCTACCATGGCGTATTTCGAGTTCTTGCCTGTTTCTCGAG
                      ____________________________________________________________
consensus             AGATTGCTTATACCATCATTCCTACCATGGCGTATTTCGAGTTCTTGCCTGTTTCTCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           AAATCGGAGTGCCCGAACCCAGACCGGTTGAAGTTGTGGATCTTGTAGATGTTAAACTCG
rJMFF018L16+                                                   CTTGTAGATGTTAAACTCG
                      ____________________________________________________________
consensus             AAATCGGAGTGCCCGAACCCAGACCGGTTGAAGTTGTGGATCTTGTAGATGTTAAACTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           GGCAAGAATATGAGATGGTCGTCACCACTTACGCAGGGTTGTATCGTTATCGTGTTGGCG
rJMSF049I01+                                  CCACTTACGCAGGGTTGTATCGTTATCGTGTTGGTG
rJMFF018L16+          GNCAAGAATATGAGGTCGTCGTCACCACTTACGCAGGGTTGTATCGTTATCGTGTTGGTG
                      ____________________________________________________________
consensus             GGCAAGAATATGAGGTGGTCGTCACCACTTACGCAGGGTTGTATCGTTATCGTGTTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           ACATTCTTCGGGTTGCCGGATTCAAGAACAACACGCCGCAATTTAACTTCGTATGTCGGA
rJMSF049I01+          ACATTCTTCGGGTTGCGGGATTCAAGAACAACACGCCGCAATTTAACTTCGTATGTCGGA
rJMFF018L16+          ACATTCTTCGGGTTGCGGGATTCAAGAACAACACGCCGCAATTTAACTTCGTATGTCGGA
                      ____________________________________________________________
consensus             ACATTCTTCGGGTTGCGGGATTCAAGAACAACACGCCGCAATTTAACTTCGTATGTCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           AGAACGTGGCGCTGAGCATAGATTTCGACAAAACGGACGAGGTAGAGCTGCATAACGCCG
rJMSF049I01+          AGAACGTGGCGCTCAGCATAGATGCCGACAAAACGGACGAGGTAGAGCTGCATAACGCCG
rJMFF018L16+          AGAACGTGGCGCTCAGCATAGATGCCGACAAAACGGACGAGGTAGAGCTGCATAACGCCG
                      ____________________________________________________________
consensus             AGAACGTGGCGCTCAGCATAGATGCCGACAAAACGGACGAGGTAGAGCTGCATAACGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           TCAAGAATGCGTCCAACATTCTTCTGCCGTTTGATGCGTCCTTAATGGAGTACACCAGCC
rJMSF049I01+          TCAAGAATGCGTCCAACATTCTTCTGCCGTTTGATGCGTCCTTAATAGAGTACACCAGCC
rJMFF018L16+          TCAAGAATGCGTCCAACATTCTTCTGCCGTTTGATGCGTCCTTAATAGAGTACACCAGCC
                      ____________________________________________________________
consensus             TCAAGAATGCGTCCAACATTCTTCTGCCGTTTGATGCGTCCTTAATAGAGTACACCAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           ATGCAAACACGTCAACCATCCCCGGACACTACGTCCTCTACTGGGAAATCACCCAGTCGT
rJMSF049I01+          ATGCAAACACGTCCACCATCCCCGGACACTACGTCCTCTACTGGGAAATCACCCAGTCGT
rJMFF018L16+          ATGCAAACACGTCCACCATCCCCGGACACTACGTCCTCTACTGGGAAATCACCCAGTCGT
                      ____________________________________________________________
consensus             ATGCAAACACGTCCACCATCCCCGGACACTACGTCCTCTACTGGGAAATCACCCAGTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           CGGAAAACCCAATTCCTCCCTACATTTTCGAACGCTGCTGCATCGCCGTCGAAGAATCAC
rJMSF049I01+          CGGAAAACCCAATTCCTCCCTCCATTTTCGAGGACTGCTGCCTCGCCGTCGAAGAATCAC
rJMFF018L16+          CGGAAAACCCAATTCCTCCCTCCATTTTCGAGGACTGCTGCCTCGCCGTCGAAGAATCAC
                      ____________________________________________________________
consensus             CGGAAAACCCAATTCCTCCCTCCATTTTCGAGGACTGCTGCCTCGCCGTCGAAGAATCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032P09-           TCAACA                                                      
rJMSF049I01+          TCAACAGCGTTTACCGGGAGTGCCGCGTCTCCGACAAGTCCATCGGGCCGCTGGAAATCA
rJMFF018L16+          TCAACAGCGTTTACCGGGAGTGCCGCGTCTCCGACAAGTCCATCGGGCCGCTGGAAATCA
                      ____________________________________________________________
consensus             TCAACAGCGTTTACCGGGAGTGCCGCGTCTCCGACAAGTCCATCGGGCCGCTGGAAATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049I01+          GGATAGTGGAGAACGGCACGTTCGATAAGATGATGGACTACGCCATCGCTAACGGTGGCT
rJMFF018L16+          GGATAGTGGAGAACGGCACGTTCGATAAGATGATGGACTACGCCATCGCTAACGGTGGCT
                      ____________________________________________________________
consensus             GGATAGTGGAGAACGGCACGTTCGATAAGATGATGGACTACGCCATCGCTAACGGTGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049I01+          CGTCAATTAATCAGTACAAAGCGCCGCGCTGTGTGACGCACGCTCCGATCGTGGAGCTTC
rJMFF018L16+          CGTCAATTAATCAGTACAAAGCGCCGCGCTGTGTGACGCACGCTCCGATCGTGGAGCTTC
                      ____________________________________________________________
consensus             CGTCAATTAATCAGTACAAAGCGCCGCGCTGTGTGACGCACGCTCCGATCGTGGAGCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049I01+          TCGACTCGCGAGTTATGTCAAATTATTTCAGTCCTAAACCTCCCGAATGGGCTCCGGGTC
rJMFF018L16+          TCGACTCGCGAGTTATGTCAAATTATTTCAGTCCTAAACCTCCCGAATGGGCTCCGGGTC
                      ____________________________________________________________
consensus             TCGACTCGCGAGTTATGTCAAATTATTTCAGTCCTAAACCTCCCGAATGGGCTCCGGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049I01+          ACAAGCATTGGAACACCAACTAAAATCAAAATGGCCTGGAGACTTTACGGACCATATATT
rJMFF018L16+          ACAAGCATTGGAACACCAACTAAAATCAAAATGGCCTGGAGACTTTACGGACCATATATT
                      ____________________________________________________________
consensus             ACAAGCATTGGAACACCAACTAAAATCAAAATGGCCTGGAGACTTTACGGACCATATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049I01+          AATGTTGTGACTTAGCATGGATAATGTTTTGTCTTCTACAATTTGTGTTTCTGCATCCTA
rJMFF018L16+          AATGTTGTGACTTAGCATGGATAATGTTTTGTCTTCTACAATTTGTGTTTCTGCATCCTA
                      ____________________________________________________________
consensus             AATGTTGTGACTTAGCATGGATAATGTTTTGTCTTCTACAATTTGTGTTTCTGCATCCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049I01+          GCTATTATTCTAGCTCT                                           
rJMFF018L16+          GCTATTATTCTAGCTCTTGTATCATTGCATGTCCTTATCCAAGAATAATTAACCAATAAT
                      ____________________________________________________________
consensus             GCTATTATTCTAGCTCTTGTATCATTGCATGTCCTTATCCAAGAATAATTAACCAATAAT