Contig 005394:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017C06Sequence477000156 (5)ref|NP_001240863.1|3e-26protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI783005394 (7)gb|ABK93253.1|1e-53unknown [Populus trichocarpa]
JMFF017N23Sequence561000156 (5)ref|NP_001240863.1|7e-43protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI780005394 (7)gb|ABK93253.1|5e-52unknown [Populus trichocarpa]
JMFF021O05Sequence563000156 (5)ref|NP_001240863.1|2e-43protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI759005394 (7)gb|ABK93253.1|5e-48unknown [Populus trichocarpa]
JMFF028C15Sequence418000156 (5)694005394 (7)gb|ABK93253.1|1e-57unknown [Populus trichocarpa]
JMSF008C15Sequence257005394 (7)ref|XP_002314178.2|2e-48Protein kinase capable of phosphorylating tyrosine family protein [Populus tric253005394 (7)gb|ABK93253.1|6e-43unknown [Populus trichocarpa]
JMSF020I01Sequence683015733ref|NP_001240863.1|9e-31protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI768005394 (7)ref|XP_009590400.1|1e-78PREDICTED: protein kinase APK1A, chloroplastic [Nicotiana tomentosiformis] ref|X

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF008C15- GACCAACAGGCGATAAAAGCCACGTCTCCACAAGGGTT
rJMSF020I01+ TTGGCCAAGNATGGACCAACAGGCGATAAAAGCCACGTCTCCACAAGGGTT
                      ____________________________________________________________
consensus TTGGCCAAGNATGGACCAACAGGCGATAAAAGCCACGTCTCCACAAGGGTT
 
. : . : . : . : . : . :
rJMFF028C15+ GGGCATTTGTCTGCTAAG
JMSF008C15- ATGGGAACTTATGGATATGCTGCTCCGGAGTACTTATCCACTGGGCATTTGTCTGCTAAG
rJMSF008C15+ GGGCATTNGTCTGCTAAG
rJMSF020I01+ ATGGGAACTTATGGATATGCTGCTCCGGAGTACTTATCCACTGGGCATTTGTCTGCTAAG
rJMFF017C06+ TAAG
                      ____________________________________________________________
consensus ATGGGAACTTATGGATATGCTGCTCCGGAGTACTTATCCACTGGGCATTTGTCTGCTAAG
 
. : . : . : . : . : . :
rJMFF028C15+ AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
JMSF008C15- AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMSF008C15+ AGCGACGTTTACAGTTTTGGAGTAGNTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMSF020I01+ AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMFF021O05+ GGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMFF017C06+ AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMFF017N23+ AGCGACGTTTACAGTTTTGGAGTAGTTNTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
                      ____________________________________________________________
consensus AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
 
. : . : . : . : . : . :
rJMFF028C15+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
JMSF008C15- GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
rJMSF008C15+ GACTATAACAGACCATGNGGAGAACACAATCTGGTAGAATGGNCCAAACCTTACTTGGCT
rJMSF020I01+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
rJMFF021O05+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
rJMFF017C06+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
rJMFF017N23+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
                      ____________________________________________________________
consensus GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
 
. : . : . : . : . : . :
rJMFF028C15+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
JMSF008C15- AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTT
rJMSF008C15+ AACAAGCGTAAAGTCTTTCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
rJMSF020I01+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
rJMFF021O05+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
rJMFF017C06+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
rJMFF017N23+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
                      ____________________________________________________________
consensus AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
 
. : . : . : . : . : . :
rJMFF028C15+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
rJMSF008C15+ GTATCCCAGAAAGTCGCTAAT
rJMSF020I01+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
rJMFF021O05+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
rJMFF017C06+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
rJMFF017N23+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
                      ____________________________________________________________
consensus GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
 
. : . : . : . : . : . :
rJMFF028C15+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
rJMSF020I01+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
rJMFF021O05+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
rJMFF017C06+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
rJMFF017N23+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
                      ____________________________________________________________
consensus CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
 
. : . : . : . : . : . :
rJMFF028C15+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
rJMSF020I01+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
rJMFF021O05+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
rJMFF017C06+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
rJMFF017N23+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
                      ____________________________________________________________
consensus ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
 
. : . : . : . : . : . :
rJMFF028C15+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
rJMSF020I01+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
rJMFF021O05+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
rJMFF017C06+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
rJMFF017N23+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
                      ____________________________________________________________
consensus GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
 
. : . : . : . : . : . :
rJMFF028C15+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
rJMSF020I01+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
rJMFF021O05+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
rJMFF017C06+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
rJMFF017N23+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
                      ____________________________________________________________
consensus CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
 
. : . : . : . : . : . :
rJMFF028C15+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
rJMSF020I01+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
rJMFF021O05+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
rJMFF017C06+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
rJMFF017N23+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
                      ____________________________________________________________
consensus TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
 
. : . : . : . : . : . :
rJMFF028C15+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
rJMSF020I01+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
rJMFF021O05+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
rJMFF017C06+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
rJMFF017N23+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
                      ____________________________________________________________
consensus GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
 
. : . : . : . : . : . :
rJMFF028C15+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAG
rJMSF020I01+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAAT
rJMFF021O05+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAATTCC
rJMFF017C06+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAATTCC
rJMFF017N23+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAATTCC
                      ____________________________________________________________
consensus TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAATTCC
 
. : . : . : . : . : . :
rJMFF021O05+ CTCCATCAAGATTGCCATTAAATACTATGGGTGCATTATTCTCATTTTAATTGCCCATAG
rJMFF017C06+ CTCCATCAAGATTGCCATTAAATACTATGGGTGCATTATTCTCATTTTAATTGCCCATAG
rJMFF017N23+ CTCCATCAAGATTGCCATTAAATACTATGGGTGCATTATTCTCATTTTAATTGCCCATAG
                      ____________________________________________________________
consensus CTCCATCAAGATTGCCATTAAATACTATGGGTGCATTATTCTCATTTTAATTGCCCATAG
 
. : . : . : . : . : . :
rJMFF021O05+ AATGCGAAATTTTCTCGTCCCTAGGAGAATCAATGTATAATGTTTACAAGAAGTCTA
rJMFF017C06+ AATGCGAAATTTTCTCGTCCCTAGGAGAATCAATGTATAATGTTTACAAGAAGTCTA
rJMFF017N23+ AATGCGAAATTTTCTCGTCCCTAGGAGAATCAATGTATAATGTTTACAAGAAGTCTATCA
                      ____________________________________________________________
consensus AATGCGAAATTTTCTCGTCCCTAGGAGAATCAATGTATAATGTTTACAAGAAGTCTATCA