clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF017C06 | Sequence | 477 | 000156 (5) | ref|NP_001240863.1| | 3e-26 | protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI | 783 | 005394 (7) | gb|ABK93253.1| | 1e-53 | unknown [Populus trichocarpa] |
JMFF017N23 | Sequence | 561 | 000156 (5) | ref|NP_001240863.1| | 7e-43 | protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI | 780 | 005394 (7) | gb|ABK93253.1| | 5e-52 | unknown [Populus trichocarpa] |
JMFF021O05 | Sequence | 563 | 000156 (5) | ref|NP_001240863.1| | 2e-43 | protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI | 759 | 005394 (7) | gb|ABK93253.1| | 5e-48 | unknown [Populus trichocarpa] |
JMFF028C15 | Sequence | 418 | 000156 (5) | 694 | 005394 (7) | gb|ABK93253.1| | 1e-57 | unknown [Populus trichocarpa] | |||
JMSF008C15 | Sequence | 257 | 005394 (7) | ref|XP_002314178.2| | 2e-48 | Protein kinase capable of phosphorylating tyrosine family protein [Populus tric | 253 | 005394 (7) | gb|ABK93253.1| | 6e-43 | unknown [Populus trichocarpa] |
JMSF020I01 | Sequence | 683 | 015733 | ref|NP_001240863.1| | 9e-31 | protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI | 768 | 005394 (7) | ref|XP_009590400.1| | 1e-78 | PREDICTED: protein kinase APK1A, chloroplastic [Nicotiana tomentosiformis] ref|X |
This contig is upended
. : . : . : . : . : . :
JMSF008C15- GACCAACAGGCGATAAAAGCCACGTCTCCACAAGGGTT
rJMSF020I01+ TTGGCCAAGNATGGACCAACAGGCGATAAAAGCCACGTCTCCACAAGGGTT
____________________________________________________________
consensus TTGGCCAAGNATGGACCAACAGGCGATAAAAGCCACGTCTCCACAAGGGTT
. : . : . : . : . : . :
rJMFF028C15+ GGGCATTTGTCTGCTAAG
JMSF008C15- ATGGGAACTTATGGATATGCTGCTCCGGAGTACTTATCCACTGGGCATTTGTCTGCTAAG
rJMSF008C15+ GGGCATTNGTCTGCTAAG
rJMSF020I01+ ATGGGAACTTATGGATATGCTGCTCCGGAGTACTTATCCACTGGGCATTTGTCTGCTAAG
rJMFF017C06+ TAAG
____________________________________________________________
consensus ATGGGAACTTATGGATATGCTGCTCCGGAGTACTTATCCACTGGGCATTTGTCTGCTAAG
. : . : . : . : . : . :
rJMFF028C15+ AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
JMSF008C15- AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMSF008C15+ AGCGACGTTTACAGTTTTGGAGTAGNTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMSF020I01+ AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMFF021O05+ GGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMFF017C06+ AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
rJMFF017N23+ AGCGACGTTTACAGTTTTGGAGTAGTTNTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
____________________________________________________________
consensus AGCGACGTTTACAGTTTTGGAGTAGTTCTTCTCGAGATGCTATCAGGGCGTAGAGTGATC
. : . : . : . : . : . :
rJMFF028C15+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
JMSF008C15- GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
rJMSF008C15+ GACTATAACAGACCATGNGGAGAACACAATCTGGTAGAATGGNCCAAACCTTACTTGGCT
rJMSF020I01+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
rJMFF021O05+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
rJMFF017C06+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
rJMFF017N23+ GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
____________________________________________________________
consensus GACTATAACAGACCATGTGGAGAACACAATCTGGTAGAATGGGCCAAACCTTACTTGGCT
. : . : . : . : . : . :
rJMFF028C15+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
JMSF008C15- AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTT
rJMSF008C15+ AACAAGCGTAAAGTCTTTCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
rJMSF020I01+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
rJMFF021O05+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
rJMFF017C06+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
rJMFF017N23+ AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
____________________________________________________________
consensus AACAAGCGTAAAGTCTTCCGCGTTTTGGACAGCCGTCTTGAAGGCCAGTACACTCTTGAG
. : . : . : . : . : . :
rJMFF028C15+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
rJMSF008C15+ GTATCCCAGAAAGTCGCTAAT
rJMSF020I01+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
rJMFF021O05+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
rJMFF017C06+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
rJMFF017N23+ GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
____________________________________________________________
consensus GTATCCCAGAAAGTCGCTAATCTTGCCTTGCACTGCCTGTCCAAGGATCCTAGGTTTAGG
. : . : . : . : . : . :
rJMFF028C15+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
rJMSF020I01+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
rJMFF021O05+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
rJMFF017C06+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
rJMFF017N23+ CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
____________________________________________________________
consensus CCAACCATGGATGATGTAGTTAAGGAACTAGAGCAACTAAAGGAGTCCAAGGATATGACA
. : . : . : . : . : . :
rJMFF028C15+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
rJMSF020I01+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
rJMFF021O05+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
rJMFF017C06+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
rJMFF017N23+ ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
____________________________________________________________
consensus ACTCTCAGCAATAAACACGATGGTTCAAGACATCATAGGCGAAGCGATGGGGCGGTTGAA
. : . : . : . : . : . :
rJMFF028C15+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
rJMSF020I01+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
rJMFF021O05+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
rJMFF017C06+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
rJMFF017N23+ GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
____________________________________________________________
consensus GAACTAGCGCAGCTCAAGGAGTCAGAGGATACGACAACCCTTGGATCAAGACGTCGTAGG
. : . : . : . : . : . :
rJMFF028C15+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
rJMSF020I01+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
rJMFF021O05+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
rJMFF017C06+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
rJMFF017N23+ CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
____________________________________________________________
consensus CGAAGTGACGGTGATGCTATTAGTAGAAACGCGACGGCTGCTTATCCAAGACCATCAACT
. : . : . : . : . : . :
rJMFF028C15+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
rJMSF020I01+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
rJMFF021O05+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
rJMFF017C06+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
rJMFF017N23+ TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
____________________________________________________________
consensus TCCCCTCTGTATGCCAAATAAATGAAGGATGCTTCTGATTTTTATACTTGGGGAAGTGGA
. : . : . : . : . : . :
rJMFF028C15+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
rJMSF020I01+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
rJMFF021O05+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
rJMFF017C06+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
rJMFF017N23+ GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
____________________________________________________________
consensus GATTGACATATATATGAGATCAGTTGACTGTACAGTTAGTTATGGTTAAGTTAGTTGACA
. : . : . : . : . : . :
rJMFF028C15+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAG
rJMSF020I01+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAAT
rJMFF021O05+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAATTCC
rJMFF017C06+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAATTCC
rJMFF017N23+ TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAATTCC
____________________________________________________________
consensus TGAACTCAGTGTGAAGATAGTGTTTTCTTAGGACAAAAGCTTGTTGTAATGCGAAATTCC
. : . : . : . : . : . :
rJMFF021O05+ CTCCATCAAGATTGCCATTAAATACTATGGGTGCATTATTCTCATTTTAATTGCCCATAG
rJMFF017C06+ CTCCATCAAGATTGCCATTAAATACTATGGGTGCATTATTCTCATTTTAATTGCCCATAG
rJMFF017N23+ CTCCATCAAGATTGCCATTAAATACTATGGGTGCATTATTCTCATTTTAATTGCCCATAG
____________________________________________________________
consensus CTCCATCAAGATTGCCATTAAATACTATGGGTGCATTATTCTCATTTTAATTGCCCATAG
. : . : . : . : . : . :
rJMFF021O05+ AATGCGAAATTTTCTCGTCCCTAGGAGAATCAATGTATAATGTTTACAAGAAGTCTA
rJMFF017C06+ AATGCGAAATTTTCTCGTCCCTAGGAGAATCAATGTATAATGTTTACAAGAAGTCTA
rJMFF017N23+ AATGCGAAATTTTCTCGTCCCTAGGAGAATCAATGTATAATGTTTACAAGAAGTCTATCA
____________________________________________________________
consensus AATGCGAAATTTTCTCGTCCCTAGGAGAATCAATGTATAATGTTTACAAGAAGTCTATCA