Contig 005393:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017N09Sequence575005393 (2)ref|XP_009794397.1|150PREDICTED: uncharacterized protein LOC104241180 [Nicotiana sylvestris]753005393 (2)ref|XP_009794397.1|179PREDICTED: uncharacterized protein LOC104241180 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF017N09-                                      AAAAATTCATTTCCAATTTCATGTTCATAACGT
rJMFF017N09+                                     AAAAATTCATTTCCAATTTCATGTTCATAACGT
                      ____________________________________________________________
consensus                                        AAAAATTCATTTCCAATTTCATGTTCATAACGT
 
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JMFF017N09-           TCCCAGCTTCCACAAATATATAGATACAGAATTGTGTATATGTGTATATAGCCCTCCTTC
rJMFF017N09+          TCCCAGCTTCCACAAATATATAGATACAGAATTGTGTATATGTGTATATAGCCCTCCTTC
                      ____________________________________________________________
consensus             TCCCAGCTTCCACAAATATATAGATACAGAATTGTGTATATGTGTATATAGCCCTCCTTC
 
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JMFF017N09-           AACTCTTCCATTCCAAGAGGCCAAAACACGGAATCAAAAGAGCGTTTTTGTGGAATCGCT
rJMFF017N09+          AACTCTTCCATTCCAAGAGGCCAAAACACGGAATCAAAAGAGCGTTTTTGTGGAATCGCT
                      ____________________________________________________________
consensus             AACTCTTCCATTCCAAGAGGCCAAAACACGGAATCAAAAGAGCGTTTTTGTGGAATCGCT
 
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JMFF017N09-           TCCGAAAACCGAAGAAAAATTCGGATCACGAAAATGGGTCAAAACACAGGGGCCAACAGT
rJMFF017N09+          TCCGAAAACCGAAGAAAAATTCGGATCACGAAAATGGGTCAAAACACAGGGGCCAACAGT
                      ____________________________________________________________
consensus             TCCGAAAACCGAAGAAAAATTCGGATCACGAAAATGGGTCAAAACACAGGGGCCAACAGT
 
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JMFF017N09-           AAAGGTAAGAAGGAAGAGGTGAAAAGGGAGCAGGTCGAGGAGGAGGAGGAGGAAGAAGAA
rJMFF017N09+          AAAGGTAAGAAGGAAGAGGTGAAAAGGGAGCAGGTCGAGGAGGAGGAGGAGGAAGAAGAA
                      ____________________________________________________________
consensus             AAAGGTAAGAAGGAAGAGGTGAAAAGGGAGCAGGTCGAGGAGGAGGAGGAGGAAGAAGAA
 
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JMFF017N09-           GAGCAGGAAGAACAGGACGGCGTGTCCGTACATTCTCCTTGCAAGCCTCCATCTTCATCT
rJMFF017N09+          GAGCAGGAAGAACAGGACGGCGTGTCCGTACATTCTCCTTGCAAGCCTCCATCTTCATCT
                      ____________________________________________________________
consensus             GAGCAGGAAGAACAGGACGGCGTGTCCGTACATTCTCCTTGCAAGCCTCCATCTTCATCT
 
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JMFF017N09-           CTCCGCAAGGAGCAATCGCAGGTGGAATTGGAGCTGAGGTTGCTGGAAGCTCTTGAAATC
rJMFF017N09+          CTCCGCAAGGAGCAATCGCAGGTGGAATTGGAGCTGAGGTTGCTGGAAGCTCTTGAAATC
                      ____________________________________________________________
consensus             CTCCGCAAGGAGCAATCGCAGGTGGAATTGGAGCTGAGGTTGCTGGAAGCTCTTGAAATC
 
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JMFF017N09-           TATCCTCCCGCCAAATTAAGAGGAGTTCATCGTCACTTTGTCCTTTATGGGTTAACAGAA
rJMFF017N09+          TATCCTCCCGCCAAATTAAGAGGAGTTCATCGTCACTTTGTCCTTTATGGGTTAACAGAA
                      ____________________________________________________________
consensus             TATCCTCCCGCCAAATTAAGAGGAGTTCATCGTCACTTTGTCCTTTATGGGTTAACAGAA
 
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JMFF017N09-           TATCTGCGAAGGAGTTTTAATAAGCACTTCACTGCCGCTGATGAATTGAAGTTGTTGGAT
rJMFF017N09+          TATCTGCGAAGGAGTTTTAATAAGCACTTCACTGCCGCTGATGAATTGAAGTTGTTGGAT
                      ____________________________________________________________
consensus             TATCTGCGAAGGAGTTTTAATAAGCACTTCACTGCCGCTGATGAATTGAAGTTGTTGGAT
 
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JMFF017N09-           CGCTTCTACAACTTGGAAATGCTGAAAGCAGACGATGATGAGGGAGAAATTCTGAATCAA
rJMFF017N09+          CGCTTCTACAACTTGGAAATGCTGAAAGCAGACGATGATGAGGGAGAAATTCTGAATCAA
                      ____________________________________________________________
consensus             CGCTTCTACAACTTGGAAATGCTGAAAGCAGACGATGATGAGGGAGAAATTCTGAATCAA
 
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JMFF017N09-           GA                                                          
rJMFF017N09+          GAGGAAGAATTTAGCTTGCCTCAAAGCTATTTCTCCAAGGAAGAATCTTAAATGTGTATG
                      ____________________________________________________________
consensus             GAGGAAGAATTTAGCTTGCCTCAAAGCTATTTCTCCAAGGAAGAATCTTAAATGTGTATG
 
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rJMFF017N09+          ACAAAGCTAGGATCAAGTTTGTCTTTTTGTTTCCTTGATCGTTATCTTCAGACTACCTTT
                      ____________________________________________________________
consensus             ACAAAGCTAGGATCAAGTTTGTCTTTTTGTTTCCTTGATCGTTATCTTCAGACTACCTTT
 
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rJMFF017N09+          TGTAGATTGTGATAACTTGGCAGGGAAACTGAATTTTGTCTTCAATATCCTAAATAAACA
                      ____________________________________________________________
consensus             TGTAGATTGTGATAACTTGGCAGGGAAACTGAATTTTGTCTTCAATATCCTAAATAAACA