Contig 005390:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009G20+            GGAAGTAAAAGAATAAATAAAACTTTCCAAACAACTCCTTATCATATGAATGGGTCTT
rJMFF017J17+          CAGGAAGTAAAAGAATAAATAAAACTTTCCAAACAACTCCTTATCATATGAATGGGTCTT
                      ____________________________________________________________
consensus             CAGGAAGTAAAAGAATAAATAAAACTTTCCAAACAACTCCTTATCATATGAATGGGTCTT
 
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rJMSF009G20+          TAAATACAAAAAAAGATTTCTAATGGTAGATATGTCAAGGAAATCCATCATTCTTGTACT
rJMFF017J17+          TAAATACAAAAAAAGATTTCTAATGGTAGATATGTCAAGGAAATCCATCATTCTTGTACT
                      ____________________________________________________________
consensus             TAAATACAAAAAAAGATTTCTAATGGTAGATATGTCAAGGAAATCCATCATTCTTGTACT
 
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rJMSF009G20+          CTTTAACAAAGTAGAATGAAAAAATTATGTCTCTTAAAACTGCTATAAAAATTATGCCAT
rJMFF017J17+          CTTTAACAAAGTAGAATGAAAAAATTATGTCTCTTAAAACTGCTATAAAAATTATGCCAT
                      ____________________________________________________________
consensus             CTTTAACAAAGTAGAATGAAAAAATTATGTCTCTTAAAACTGCTATAAAAATTATGCCAT
 
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rJMSF009G20+          GAACATAGGTGCCCTTAAAAAAGAAAACAGACATTTAGAAAGATAGTATAGCTGAAAATT
rJMFF017J17+          GAACATAGGTGCCCTTAAAAAAGAAAACAGACATTTAGAAAGATAGTATAGCTGAAAATT
                      ____________________________________________________________
consensus             GAACATAGGTGCCCTTAAAAAAGAAAACAGACATTTAGAAAGATAGTATAGCTGAAAATT
 
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rJMSF009G20+          AAGAACTGAAAAATAGTATTTAGAACCCTAAACCCTTACCTCAGAATCATGGTAGGTAGA
rJMFF017J17+          AAGAACTGAAAAATAGTATTTAGAACCCTAAACCCTTACCTCAGAATCATGGTAGGTAGA
                      ____________________________________________________________
consensus             AAGAACTGAAAAATAGTATTTAGAACCCTAAACCCTTACCTCAGAATCATGGTAGGTAGA
 
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rJMSF009G20+          GACTCTCTTTATTAGAATTGTGTTTCGACCTTCAGGGACAAATGTAGGTTCGCACTAACC
rJMFF017J17+          GACTCTCTTTATTAGAATTGTGTTTCGACCTTCAGGGACAAATGTAGGTTCGCACTAACC
                      ____________________________________________________________
consensus             GACTCTCTTTATTAGAATTGTGTTTCGACCTTCAGGGACAAATGTAGGTTCGCACTAACC
 
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rJMSF009G20+          TTAACCTTGTAGCTTTTTTGGTATAATGGTGCCATTTTAGGTTTTGCAAATGTTTAAACA
rJMFF017J17+          TTAACCTTGTAGCTTTTTTGGTATAATGGTGCCATTTTAGGTTTTGCAAATGTTTAAACA
                      ____________________________________________________________
consensus             TTAACCTTGTAGCTTTTTTGGTATAATGGTGCCATTTTAGGTTTTGCAAATGTTTAAACA
 
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rJMSF009G20+          AATTTGTTGATCAAAGCTTAGAAGAGATTCAAAGAAGAAGGATGTGGCAACAACAAAGAA
rJMFF017J17+          AATTTGTTGATCAAAGCTTAGAAGAGATTCAAAGAAGAAGGATGTGGCAACAACAAAGAA
                      ____________________________________________________________
consensus             AATTTGTTGATCAAAGCTTAGAAGAGATTCAAAGAAGAAGGATGTGGCAACAACAAAGAA
 
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rJMSF009G20+          GAAGGAGGTGGCTTTAGTTGCTGCTCCCTGCTGGTAGTGTACTATTTATAGCAGAAGTAT
rJMFF017J17+          GAAGGAGGTGGCTTTAGTTGCTGCTCCCTGCTGGTAGTGTACTATTTATAGCAGAAGTAT
                      ____________________________________________________________
consensus             GAAGGAGGTGGCTTTAGTTGCTGCTCCCTGCTGGTAGTGTACTATTTATAGCAGAAGTAT
 
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rJMSF009G20+          GAAGCAGATGGAGTTCTAAAAAGTATACAATATTAATGAAATTGGATCATTGTGTTGCAC
rJMFF017J17+          GAAGCAGATGGAGTTCTAAAAAGTATACAATATTAATGAAATTGGATCATTGTGTTGCAC
                      ____________________________________________________________
consensus             GAAGCAGATGGAGTTCTAAAAAGTATACAATATTAATGAAATTGGATCATTGTGTTGCAC
 
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rJMSF009G20+          CGGTTATCCAAACGCCAAAAGTAAAGGCTGCTGCTTTGAAAAACTTAATTTGTATTAAGT
rJMFF017J17+          CGGTTATCCAAACGCCAAAAGTAAAGGCTGCTGCTTTGAAAAACTTAATTTGTATTAAGT
                      ____________________________________________________________
consensus             CGGTTATCCAAACGCCAAAAGTAAAGGCTGCTGCTTTGAAAAACTTAATTTGTATTAAGT
 
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rJMSF009G20+          AGTGTTTTATTAGTCTTCTAATTTTAAGCCTTCAGATTTTAAAAAAATTGTAATTCATGT
rJMFF017J17+          AGTGTTTTATTAGTCTTCTAATTTTAAGCCTTCAGATTTT-AAAAAATTGTAATTCATGT
                      ____________________________________________________________
consensus             AGTGTTTTATTAGTCTTCTAATTTTAAGCCTTCAGATTTTAAAAAAATTGTAATTCATGT
 
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rJMSF009G20+          TGTGTGTATTATGTAGACAATGCATTAACT                              
rJMFF017J17+          TGTGTGTATTATGTAGACAATGCATTAACTTGGAACAATTTCCAATGAGCCAATTAAAAG
                      ____________________________________________________________
consensus             TGTGTGTATTATGTAGACAATGCATTAACTTGGAACAATTTCCAATGAGCCAATTAAAAG