Contig 005389:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010L04Sequence620009235 (9)ref|XP_011080124.1|3e-101PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch808005389 (8)ref|XP_011080124.1|3e-81PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMFF016E09Sequence546009235 (9)ref|XP_011080124.1|2e-85PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch717005389 (8)emb|CDP03802.1|3e-43unnamed protein product [Coffea canephora]
JMFF016E10Sequence550009235 (9)ref|XP_011080124.1|7e-87PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch778005389 (8)ref|XP_009586626.1|1e-58PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMFF017B05Sequence594009235 (9)ref|XP_011080124.1|6e-92PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch781005389 (8)emb|CDP03802.1|1e-43unnamed protein product [Coffea canephora]
JMSF001A21Sequence270009235 (9)ref|XP_002301843.1|2e-21hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo670005389 (8)emb|CDP03802.1|5e-44unnamed protein product [Coffea canephora]
JMSF011C08Sequence265009235 (9)ref|XP_002301843.1|3e-08hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo784005389 (8)ref|XP_011080124.1|8e-83PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMSF026D02Sequence664009235 (9)ref|XP_011080124.1|2e-105PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch719005389 (8)ref|XP_009586626.1|2e-45PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMSF040O20Sequence675009235 (9)ref|XP_011080124.1|3e-102PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch755005389 (8)ref|XP_011080124.1|2e-90PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch

Alignment

This contig is upended


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rJMSF040O20+                                     AATTGGAGATGGCTCTACAAAAATCCAACCTGT
rJMSF011C08+                                                                    GT
                      ____________________________________________________________
consensus                                        AATTGGAGATGGCTCTACAAAAATCCAACCTGT
 
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rJMSF040O20+          ATATGTTACTGATGTTGCATCTGCAGTTATTGCATCACTGAAAGATGATGGTTCCAGCAT
rJMSF011C08+          ATATGTTACTGATGTTGCATCTGCAGTTATTGCATCACTGAAAGATGATGGTTCCAGCAT
rJMFF010L04+              GTTACTGATGTTGCATCTGCAGTTATTGCATCACTGAAAGATGATGGTTCCAGCAT
                      ____________________________________________________________
consensus             ATATGTTACTGATGTTGCATCTGCAGTTATTGCATCACTGAAAGATGATGGTTCCAGCAT
 
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rJMSF040O20+          GGGAAAAGTTTATGAACTTGGTGGACCGGAAATTTACACTATGCACCAATTGGCAGAGCT
rJMSF011C08+          GGGAAAAGTTTATGAACTTGGTGGACCGGAAATTTACACTATGCACCAATTGGCAGAGCT
rJMFF010L04+          GGGAAAAGTTTATGAACTTGGTGGACCGGAAATTTACACTATGCACCAATTGGCAGAGCT
rJMFF016E10+                                                  ATGCACCAATTGGCAGAGCT
                      ____________________________________________________________
consensus             GGGAAAAGTTTATGAACTTGGTGGACCGGAAATTTACACTATGCACCAATTGGCAGAGCT
 
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rJMSF040O20+          TATGTATGACGTGATCCGTGAATGGCCTCGCTATGTTAAGGTTCCTTTCCCTATTGCTAA
rJMSF011C08+          TATGTATGACGTGATCCGTGAATGGCCTCGCTATGTTAAGGTTCCTTTCCCTATTGCTAA
rJMFF010L04+          TATGTATGACGTGATCCGTGAATGGCCTCGCTATGTTAAGGTTCCTTTCCCTATTGCTAA
rJMSF026D02+                                                AGGTTCCTTTCCCTATTGCTAA
rJMFF016E10+          TATGTATGACGTGATCCGTGAATGGCCTCGCTATGNTAAGGTTCCTTTCCCTATTGCTAA
rJMFF017B05+                                                                     A
                      ____________________________________________________________
consensus             TATGTATGACGTGATCCGTGAATGGCCTCGCTATGTTAAGGTTCCTTTCCCTATTGCTAA
 
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rJMSF040O20+          GGCAATTGCTACACCTCGAGAAGTACTGCTCAAGAAAGTTCCCTTTCCATTGCCAACTCC
rJMSF011C08+          GGCAATTGCTACACCTCGAGAAGTATTGCTCAAGAAAGTTCCCTTTCCATTGCCAACTCC
rJMFF010L04+          GGCAATTGCTACACCTCGAGAAGTACTGCTCAAGAAAGTTCCCTTTCCATTGCCAACTCC
rJMSF001A21+          GGCAATTGCTACACCTCGAGAAGTACTGCTCAAGAAAGTTCCCTTTCCATTGCCAACTCC
rJMSF026D02+          GGCAATTGCTACACCTCGAGAAGTACTGCTCAAGAAAGTTCCCTTTCCATTGCCAACTCC
rJMFF016E10+          GGCAATTGCTACACCTCGAGAAGTACTGCTCAAGAAAGTTCCCTTTCCATTGCCAACTCC
rJMFF016E09+            CAATTGCTACACCTCGAGAAGTACTGCTCAAGAAAGTTCCCTTTCCATTGCCAACTCC
rJMFF017B05+          GGCAATTGCTACACCTCGAGAAGTACTGCTCAAGAAAGTTCCCTTTCCATTGCCAACTCC
                      ____________________________________________________________
consensus             GGCAATTGCTACACCTCGAGAAGTACTGCTCAAGAAAGTTCCCTTTCCATTGCCAACTCC
 
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rJMSF040O20+          CTCAATATTTAACCTGGATTTGATTGAAGCCCTTACCACTGATACTGTTGTGTCAAAAGA
rJMSF011C08+          CTCAATATTTAACCTGGATTTGATTGAAGCCCTTACCACTGATACTGTTGTGTCAAAAGA
rJMFF010L04+          CTCAATATTTAACCTGGATTTGATTGAAGCCCTTACCACTGATACTGTTGTGTCAAAAGA
rJMSF001A21+          CTCAATATTTAACCTGGATTTGATTGAAGCCCTTACCACTGATACTGTTGTGTCAAAAGA
rJMSF026D02+          CTCAATATTTAACCTGGATTTGATTGAAGCCCTTACCACTGATACTGTTGTGTCAAAAGA
rJMFF016E10+          CTCAATATTTAACCTGGATTTGATTGAAGCCCTTACCACTGATACTGTTGTGTCAAAAGA
rJMFF016E09+          CTCAATATTTAACCTGGATTTGATTGAAGCCCTTACCACTGATACTGTTGTGTCAAAAGA
rJMFF017B05+          CTCAATATTTAACCTGGATTTGATTGAAGCCCTTACCACTGATACTGTTGTGTCAAAAGA
                      ____________________________________________________________
consensus             CTCAATATTTAACCTGGATTTGATTGAAGCCCTTACCACTGATACTGTTGTGTCAAAAGA
 
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rJMSF040O20+          TGCTCTGACATTTGATGATCTTGGGATTGTCCCCCATAAGCTGAAGGGCTATCCAGTTGA
rJMSF011C08+          TGCTCTGACATTTGATGATCTTGGGATTGTCCCCCATAAGCTGAAGGGCTATCCAGTTGA
rJMFF010L04+          TGCTCTGACATTTGATGATCTTGGGATTGTCCCCCATAAGCTGAAGGGCTATCCAGTTGA
rJMSF001A21+          TGCTCTGACATTTGATGATCTTGGGATTGTCCCCCATAAGCTGAAGGGCTATCCAGTTGA
rJMSF026D02+          TGCTCTGACATTTGATGATCTTGGGATTGTCCCCCATAAGCTGAAGGGCTATCCAGTTGA
rJMFF016E10+          TGCTCTGACATTTGATGATCTTGGGATTGTCCCCCATAAGCTGAAGGGCTATCCAGTTGA
rJMFF016E09+          TGCTCTGACATTTGATGATCTTGGGATTGTCCCCCATAAGCTGAAGGGCTATCCAGTTGA
rJMFF017B05+          TGCTCTGACATTTGATGATCTTGGGATTGTCCCCCATAAGCTGAAGGGCTATCCAGTTGA
                      ____________________________________________________________
consensus             TGCTCTGACATTTGATGATCTTGGGATTGTCCCCCATAAGCTGAAGGGCTATCCAGTTGA
 
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rJMSF040O20+          GTATCTTATCCAATATCGTAAAGGTGGACCTCAATATGGTTCAACAGTTAGTGAAAGAGT
rJMSF011C08+          GTATCTTATCCAATATCGTAAAGGTGGACCTCAATATGGTTCAACAGTTAGTGAAAGAGT
rJMFF010L04+          GTATCTTATCCAATATCGTAAAGGTGGACCTCAATATGGTTCAACAGTTAGTGAAAGAGT
rJMSF001A21+          GTATCTTATCCAATATCGTAAAGGTGGACCTCAATATGGTTCAACAGTTAGTGAAAGAGT
rJMSF026D02+          GTATCTTATCCAATATCGTAAAGGTGGACCTCAATATGGTTCAACAGTTAGTGAAAGAGT
rJMFF016E10+          GTATCTTATCCAATATCGTAAAGGTGGACCTCAATATGGTTCANCAGTTAGTGAAAGAGT
rJMFF016E09+          GTATCTTATCCAATATCGTAAAGGTGGACCTCAATATGGTTCAACAGTTAGTGAAAGAGT
rJMFF017B05+          GTATCTTATCCAATATCGTAAAGGTGGACCTCAATATGGTTCAACAGTTAGTGAAAGAGT
                      ____________________________________________________________
consensus             GTATCTTATCCAATATCGTAAAGGTGGACCTCAATATGGTTCAACAGTTAGTGAAAGAGT
 
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rJMSF040O20+          ATCCCCCGAGTCTTATCCATGAGGTCCTTCACATCTTCAGTTTGAACATTTTCCGTTGTT
rJMSF011C08+          ATCCCCCGAGTCTTATCCATGAGGTCCTTCACATCTTCAGTTTGAACATTTTCCGTTGTT
rJMFF010L04+          ATCCCCCGAGTCTTATCCATGAGGTCCTTCACATCTTCAGTTTGAACATTTTCCGTTGTT
rJMSF001A21+          ATCCCCCGAGTCTTATCCATGAGGTCCTTCACATCTTCAGTTTGAACATTTTCCGTTGTT
rJMSF026D02+          ATCCCCCGAGTCTTATCCATGAGGTCCTTCACATCTTCAGTTTGAACATTTTCCGTTGTT
rJMFF016E10+          ATCCCCCGAGTCTTATCCATGAGGTCCTTCACATCTTCAGTTTGAACATTTTCCGTTGTT
rJMFF016E09+          ATCCCCCGAGTCTTATCCATGAGGTCCTTCACATCTTCAGTTTGAACATTTTCCGTTGTT
rJMFF017B05+          ATCCCCCGAGTCTTATCCATGAGGTCCTTCACATCTTCAGTTTGAACATTTTCCGTTGTT
                      ____________________________________________________________
consensus             ATCCCCCGAGTCTTATCCATGAGGTCCTTCACATCTTCAGTTTGAACATTTTCCGTTGTT
 
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rJMSF040O20+          AGAACAGAACTCTTCCCTGTTTGCTCGAGTCAAACAAGGGAATAATAAAGACATGGAGAA
rJMSF011C08+          AGAACAGAACTCTTCCCTGTTTGCTCGAGTCAAACAAGGGAATAATAAAGACATGGAGAA
rJMFF010L04+          AGAACAGAACTCTTCCCTGTTTGCTCGAGTCAAACAAGGGAATAATAAAGACATGGAGAA
rJMSF001A21+          AGAACAGAACTCTTCCCTGTTTGCTCGAGTCAAACAAGGGAATAATAAAGACATGGAGAA
rJMSF026D02+          AGAACAGAACTCTTCCCTGTTTGCTCGAGTCAAACAAGGGAATAATAAAGACATGGAGAA
rJMFF016E10+          AGAACAGAACTCTTCCCTGTTTGCTCGAGTCAAACAAGGGAATAATAAAGACATGGAGAA
rJMFF016E09+          AGAACAGAACTCTTCCCTGTTTGCTCGAGTCAAACAAGGGAATAATAAAGACATGGAGAA
rJMFF017B05+          AGAACAGAACTCTTCCCTGTTTGCTCGAGTCAAACAAGGGAATAATAAAGACATGGAGAA
                      ____________________________________________________________
consensus             AGAACAGAACTCTTCCCTGTTTGCTCGAGTCAAACAAGGGAATAATAAAGACATGGAGAA
 
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rJMSF040O20+          TTCTTCTTCTTCAGCAACCTGATAACCCGTACAGCGCTGATAAACTCTCTACCTAGCTGT
rJMSF011C08+          TTCTTCTTCTTCAGCAACCTGATAACCCGTACAGCGCTGATAAACTCTCTACCTAGCTGT
rJMFF010L04+          TTCTTCTTCTTCAGCAACCTGATAACCCGTACAGCGCTGATAAACTCTCTACCTAGCTGT
rJMSF001A21+          TTCTTCTTCTTCAGCAACCTGATAACCCGTACAGCGCTGATAAACTCTCTACCTAGCTGT
rJMSF026D02+          TTCTTCTTCTTCAGCAACCTGATAACCCGTACAGCGCTGATAAACTCTCTACCTAGCTGT
rJMFF016E10+          TTCTTCTTCTTCAGCAACCTGATAACCCGTACAGCGCTGATAAACTCTCTACCTAGCTGT
rJMFF016E09+          TTCTTCTTCTTCAGCAACCTGATAACCCGTACAGCGCTGATAAACTCTCTACCTAGCTGT
rJMFF017B05+          TTCTTCTTCTTCAGCAACCTGATAACCCGTACAGCGCTGATAAACTCTCTACCTAGCTGT
                      ____________________________________________________________
consensus             TTCTTCTTCTTCAGCAACCTGATAACCCGTACAGCGCTGATAAACTCTCTACCTAGCTGT
 
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rJMSF040O20+          GTGGTGCTTGACCAACACCGAGGACTTTTAGAGAAATGAATGTATAATTGCGCCTAACGT
rJMSF011C08+          GTGGTGCTTGACCAACACCGAGGACTTTTAGAGAAATGAATGTATAATTGCGCCTAACGT
rJMFF010L04+          GTGGTGCTTGACCAACACCGAGGAC-TTTAGAGAAATGAATGTATAATTGCGCCTAACGT
rJMSF001A21+          GTGGTGCTTGACCAACACCGAGGACTTTTAGAGAAATGAATGTATAATTGCGCCTAACGT
rJMSF026D02+          GTGGTGCTTGACCAACACCGAGGACTTTTAGAGAAATGAATGTATAATTGCGCCTAACGT
rJMFF016E10+          GTGGTGCTTGACCAACACCGAGGACTTTTAGAGAAATGAATGTATAATTGCGCCTAACGT
rJMFF016E09+          GTGGTGCTTGACCAACACCGAGGACTTTTAGAGAAATGAATGTATAATTGCGCCTAACGT
rJMFF017B05+          GTGGTGCTTGACCAACACCGAGGACTTTTAGAGAAATGAATGTATAATTGCGCCTAACGT
                      ____________________________________________________________
consensus             GTGGTGCTTGACCAACACCGAGGACTTTTAGAGAAATGAATGTATAATTGCGCCTAACGT
 
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rJMSF040O20+          TTTGATGGCTATTGTACCTTCTTCCATTTAATTTCCTCTGCATTATTTCCCTTTT     
rJMSF011C08+          TTTGATGGCTATTGTACCTTCTTCCATTTAATTTCCTCTGCATTATTTCCTTTTTGACGA
rJMFF010L04+          TTTGATGGCTATTGTACCTTCTTCCATTTAATTTCCTCTGCATTATTTCCTTTTTGACGA
rJMSF001A21+          TTTGATGGCTATTGTACCTTCTTCCATTTAATTTCCTCTGCATTATTTCCTTTTTGACGA
rJMSF026D02+          TTTGATGGCTATTGTACCTTCTTCCATTTAATTTCCTCTGCATTATTTCCTTTTTGACGA
rJMFF016E10+          TTTGATGGCTATTGTACCTTCTTCCATTTAATTTCCTCTGCATTATTTCCTTTTTGACGA
rJMFF016E09+          TTTGATGGCTATTGTACCTTCTTCCATTTAATTTCCTCTGCATTATTTCCTTTTTGACGA
rJMFF017B05+          TTTGATGGCTATTGTACCTTCTTCCATTTAATTTCCTCTGCATTATTTCCTTTTTGACGA
                      ____________________________________________________________
consensus             TTTGATGGCTATTGTACCTTCTTCCATTTAATTTCCTCTGCATTATTTCCTTTTTGACGA
 
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rJMSF011C08+          TCTGTGCATGAAGGTCACATGGGGAACAAAATGATATCCCTTCTCTTACAAGTTTGCTAT
rJMFF010L04+          TCTGTGCATGAAGGTCACATGGGGAACAAAATGATATCCCTTCTCTTACAAGTTTGCTAT
rJMSF001A21+          TCTGTGCATGAAGGTCACATGGGGAACAAAATGATATCCCTTCTCTTACAAGTTTGCTAT
rJMSF026D02+          TCTGTGCATGAAGGTCACATGGGGAACAAAATGATATCCCTTCTCTTACAAGTTTGCTAT
rJMFF016E10+          TCTGTGCATGAAGGTCACATGGGGAACAAAATGATATCCCTTCTCTTACAAGTTTGCTAT
rJMFF016E09+          TCTGTGCATGAAGGTCACATGGGGAACAAAATGATATCCCTTCTCTTACAAGTTTGCTAT
rJMFF017B05+          TCTGTGCATGAAGGTCACATGGGGAACAAAATGATATCCCTTCTCTTACAAGTTTGCTAT
                      ____________________________________________________________
consensus             TCTGTGCATGAAGGTCACATGGGGAACAAAATGATATCCCTTCTCTTACAAGTTTGCTAT
 
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rJMSF011C08+          GC                                                          
rJMFF010L04+          GCTGTCACTGTTGTTATGCCAATTGAGATTCAT                           
rJMSF001A21+          GCTGTCACTGTTGTTATGCCAATTGAGATTCATATTTATGTTTGCATTTGCTAGGGTTCA
rJMSF026D02+          GCTGTCACTGTTGTTATGCCAATTGAGATTCATATTTATGTTTGCATTTGCTAGGGTTCA
rJMFF016E10+          GCTGTCACTGTTGTTATGCCAATTGAGATTCATATTTATGTTTGCATTTGCTAGGGTTCA
rJMFF016E09+          GCTGTCACTGTTGTTATGCCAATTGAGATTCATATTTATGTTTGCATTTGCTAGGGTTCA
rJMFF017B05+          GCTGTCACTGTTGTTATGCCAATTGAGATTCATATTTATGTTTGCATTTGCTAGGGTTCA
                      ____________________________________________________________
consensus             GCTGTCACTGTTGTTATGCCAATTGAGATTCATATTTATGTTTGCATTTGCTAGGGTTCA
 
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rJMSF001A21+          ATGGGACT                                                    
rJMSF026D02+          ATGGGACTTGCCTCATGGCTAAAATGTTCACCTTT                         
rJMFF016E10+          ATGGGACTTGCCTCATGGCTAAAATGTTCACCTTT                         
rJMFF016E09+          ATGGGACTTGCCTCATGGCTAAAATGTTCACCTTTTCTTTTGAAATTCT           
rJMFF017B05+          ATGGGACTTGCCTCATGGCTAAAATGTTCACCTTTTCTTTTGAAATTCTTGAAATAAATA
                      ____________________________________________________________
consensus             ATGGGACTTGCCTCATGGCTAAAATGTTCACCTTTTCTTTTGAAATTCTTGAAATAAATA
 
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rJMFF017B05+          TATCCATTGTGTTGACTGTTGAGGGAGCTCTTACTTAATATTATCCAAATAGAGAAGGCA
                      ____________________________________________________________
consensus             TATCCATTGTGTTGACTGTTGAGGGAGCTCTTACTTAATATTATCCAAATAGAGAAGGCA