clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF015O24 | Sequence | 660 | 002214 (4) | ref|XP_009630311.1| | 3e-39 | PREDICTED: protein HGV2 [Nicotiana tomentosiformis] | 786 | 005388 (4) | ref|XP_010646387.1| | 2e-51 | PREDICTED: protein HGV2 isoform X1 [Vitis vinifera] |
JMFF017A04 | Sequence | 551 | 002214 (4) | ref|XP_009630311.1| | 3e-39 | PREDICTED: protein HGV2 [Nicotiana tomentosiformis] | 754 | 005388 (4) | ref|XP_010646388.1| | 5e-41 | PREDICTED: protein HGV2 isoform X2 [Vitis vinifera] |
JMSF003H18 | Sequence | 444 | 002214 (4) | ref|XP_009630311.1| | 6e-27 | PREDICTED: protein HGV2 [Nicotiana tomentosiformis] | 755 | 005388 (4) | ref|XP_010646387.1| | 3e-45 | PREDICTED: protein HGV2 isoform X1 [Vitis vinifera] |
JMSF021L07 | Sequence | 636 | 002214 (4) | ref|XP_009630311.1| | 2e-29 | PREDICTED: protein HGV2 [Nicotiana tomentosiformis] | 782 | 005388 (4) | ref|XP_010646388.1| | 9e-55 | PREDICTED: protein HGV2 isoform X2 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF003H18+ GACAGTCGGCATATTGCTGAGCTAAACTTCAGG
rJMSF021L07+ GTCGGCATATTGNTGAGNTAAACTTCAGG
____________________________________________________________
consensus GACAGTCGGCATATTGCTGAGCTAAACTTCAGG
. : . : . : . : . : . :
rJMSF003H18+ ATATGCCTGTGTT-GGAAATTGGTTCTAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
rJMSF021L07+ ATATGCCTGTGTTNGGAAATTGGTTCTAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
rJMFF015O24+ TTGGAAATTGGTTCTAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
rJMFF017A04+ TAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
____________________________________________________________
consensus ATATGCCTGTGTTTGGAAATTGGTTCTAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
. : . : . : . : . : . :
rJMSF003H18+ GCTATTTCAGTTTGCAAGTCAAGGGTGCAACGGCTCACAATGCCATCATCAGAGTCTACT
rJMSF021L07+ GCTATTTCAGTTTGCAAGTCAAGGGTGCAACGGCTCACAATGCCATCATCAGAGTCTACT
rJMFF015O24+ GCTATTTCAGTTTGCAAGTCAAGGGTGCAACGGCTCACAATGCCATCATCAGAGTCTACT
rJMFF017A04+ GCTATCTCAGTTTGCAAGTCAAGGGTGCANCGGCTCACAATGCCATCATCAGAGTCTACT
____________________________________________________________
consensus GCTATTTCAGTTTGCAAGTCAAGGGTGCAACGGCTCACAATGCCATCATCAGAGTCTACT
. : . : . : . : . : . :
rJMSF003H18+ GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
rJMSF021L07+ GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
rJMFF015O24+ GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
rJMFF017A04+ GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
____________________________________________________________
consensus GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
. : . : . : . : . : . :
rJMSF003H18+ ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
rJMSF021L07+ ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
rJMFF015O24+ ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
rJMFF017A04+ ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
____________________________________________________________
consensus ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
. : . : . : . : . : . :
rJMSF003H18+ CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
rJMSF021L07+ CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
rJMFF015O24+ CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
rJMFF017A04+ CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
____________________________________________________________
consensus CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
. : . : . : . : . : . :
rJMSF003H18+ AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGAGCTCTTCACAAGTCGCCACTATT
rJMSF021L07+ AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGAGCTCTTCACAAGTCGCCACTATT
rJMFF015O24+ AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGAGCTCTTCACAAGTCGCCACTATT
rJMFF017A04+ AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGANCTCTTCACAAGTCGCCACTATT
____________________________________________________________
consensus AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGAGCTCTTCACAAGTCGCCACTATT
. : . : . : . : . : . :
rJMSF003H18+ AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
rJMSF021L07+ AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
rJMFF015O24+ AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
rJMFF017A04+ AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
____________________________________________________________
consensus AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
. : . : . : . : . : . :
rJMSF003H18+ TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
rJMSF021L07+ TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
rJMFF015O24+ TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
rJMFF017A04+ TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
____________________________________________________________
consensus TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
. : . : . : . : . : . :
rJMSF003H18+ ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
rJMSF021L07+ ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
rJMFF015O24+ ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
rJMFF017A04+ ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
____________________________________________________________
consensus ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
. : . : . : . : . : . :
rJMSF003H18+ GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
rJMSF021L07+ GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
rJMFF015O24+ GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
rJMFF017A04+ GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
____________________________________________________________
consensus GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
. : . : . : . : . : . :
rJMSF003H18+ TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
rJMSF021L07+ TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
rJMFF015O24+ TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
rJMFF017A04+ TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
____________________________________________________________
consensus TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
. : . : . : . : . : . :
rJMSF003H18+ ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAAC
rJMSF021L07+ ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAACGG
rJMFF015O24+ ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAACGG
rJMFF017A04+ ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAACGG
____________________________________________________________
consensus ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAACGG
. : . : . : . : . : . :
rJMSF021L07+ CCCAAAACAGTATTCTGCACTTATGTCTACTCT
rJMFF015O24+ CCCAAAACAGTATTCTGCACTTATGTCTACTCTGCAATATTTCTACTCCGTTCTCTCGGT
rJMFF017A04+ CCCAAAACAGTATTCTGCACTTATGTCTACTCTGCAATATTTCTACTCCGTTCTCTCGGT
____________________________________________________________
consensus CCCAAAACAGTATTCTGCACTTATGTCTACTCTGCAATATTTCTACTCCGTTCTCTCGGT