Contig 005388:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015O24Sequence660002214 (4)ref|XP_009630311.1|3e-39PREDICTED: protein HGV2 [Nicotiana tomentosiformis]786005388 (4)ref|XP_010646387.1|2e-51PREDICTED: protein HGV2 isoform X1 [Vitis vinifera]
JMFF017A04Sequence551002214 (4)ref|XP_009630311.1|3e-39PREDICTED: protein HGV2 [Nicotiana tomentosiformis]754005388 (4)ref|XP_010646388.1|5e-41PREDICTED: protein HGV2 isoform X2 [Vitis vinifera]
JMSF003H18Sequence444002214 (4)ref|XP_009630311.1|6e-27PREDICTED: protein HGV2 [Nicotiana tomentosiformis]755005388 (4)ref|XP_010646387.1|3e-45PREDICTED: protein HGV2 isoform X1 [Vitis vinifera]
JMSF021L07Sequence636002214 (4)ref|XP_009630311.1|2e-29PREDICTED: protein HGV2 [Nicotiana tomentosiformis]782005388 (4)ref|XP_010646388.1|9e-55PREDICTED: protein HGV2 isoform X2 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF003H18+                                     GACAGTCGGCATATTGCTGAGCTAAACTTCAGG
rJMSF021L07+                                         GTCGGCATATTGNTGAGNTAAACTTCAGG
                      ____________________________________________________________
consensus                                        GACAGTCGGCATATTGCTGAGCTAAACTTCAGG
 
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rJMSF003H18+          ATATGCCTGTGTT-GGAAATTGGTTCTAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
rJMSF021L07+          ATATGCCTGTGTTNGGAAATTGGTTCTAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
rJMFF015O24+                      TTGGAAATTGGTTCTAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
rJMFF017A04+                                    TAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
                      ____________________________________________________________
consensus             ATATGCCTGTGTTTGGAAATTGGTTCTAGGCCCCAGGAGGCCATCCCATACTGTGAAAAA
 
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rJMSF003H18+          GCTATTTCAGTTTGCAAGTCAAGGGTGCAACGGCTCACAATGCCATCATCAGAGTCTACT
rJMSF021L07+          GCTATTTCAGTTTGCAAGTCAAGGGTGCAACGGCTCACAATGCCATCATCAGAGTCTACT
rJMFF015O24+          GCTATTTCAGTTTGCAAGTCAAGGGTGCAACGGCTCACAATGCCATCATCAGAGTCTACT
rJMFF017A04+          GCTATCTCAGTTTGCAAGTCAAGGGTGCANCGGCTCACAATGCCATCATCAGAGTCTACT
                      ____________________________________________________________
consensus             GCTATTTCAGTTTGCAAGTCAAGGGTGCAACGGCTCACAATGCCATCATCAGAGTCTACT
 
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rJMSF003H18+          GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
rJMSF021L07+          GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
rJMFF015O24+          GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
rJMFF017A04+          GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
                      ____________________________________________________________
consensus             GCTGCAGAGTCATCCAAAATGTTACAGTCAACTGATTCTTCCCAGGATAATGAAGCAGAA
 
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rJMSF003H18+          ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
rJMSF021L07+          ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
rJMFF015O24+          ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
rJMFF017A04+          ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
                      ____________________________________________________________
consensus             ATTAAAACACTTACTGGTCTCTGTAGTGAACTAGAAAAGAAGCTTGAAGAACTTAACCAG
 
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rJMSF003H18+          CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
rJMSF021L07+          CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
rJMFF015O24+          CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
rJMFF017A04+          CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
                      ____________________________________________________________
consensus             CTTGTCTCCAACCCAACATCTATCCTCCAAGATATCCTTGGAATTGTTGCTGCAAAGGCA
 
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rJMSF003H18+          AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGAGCTCTTCACAAGTCGCCACTATT
rJMSF021L07+          AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGAGCTCTTCACAAGTCGCCACTATT
rJMFF015O24+          AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGAGCTCTTCACAAGTCGCCACTATT
rJMFF017A04+          AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGANCTCTTCACAAGTCGCCACTATT
                      ____________________________________________________________
consensus             AAAGGTGCTGAGAAAAGCTCTGCATCTGTAGCAATGAGCTCTTCACAAGTCGCCACTATT
 
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rJMSF003H18+          AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
rJMSF021L07+          AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
rJMFF015O24+          AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
rJMFF017A04+          AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
                      ____________________________________________________________
consensus             AATAGTCATGGAGATTTTGACTCCCCAACTGCTTCCACCGCCCATACAACAAATGGTGCA
 
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rJMSF003H18+          TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
rJMSF021L07+          TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
rJMFF015O24+          TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
rJMFF017A04+          TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
                      ____________________________________________________________
consensus             TCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGGGTCAAGCGAGTTAATCTAAACCCA
 
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rJMSF003H18+          ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
rJMSF021L07+          ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
rJMFF015O24+          ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
rJMFF017A04+          ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
                      ____________________________________________________________
consensus             ATCACATCAGAGTCTAAGCCGGTGAAAAGACCTTCTCTAGATCCTCCAAATAATGGCGAA
 
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rJMSF003H18+          GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
rJMSF021L07+          GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
rJMFF015O24+          GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
rJMFF017A04+          GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
                      ____________________________________________________________
consensus             GGGAGCACATCCTGAAGCATCTTGCATCCCCAACTTTAATTCGCACTACCTGTGGCCAAT
 
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rJMSF003H18+          TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
rJMSF021L07+          TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
rJMFF015O24+          TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
rJMFF017A04+          TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
                      ____________________________________________________________
consensus             TCGATGAATTAAAGGCATGCTATGGTGATCAGAAATTTGCTGTTGTGTCTGAGTCATTTC
 
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rJMSF003H18+          ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAAC  
rJMSF021L07+          ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAACGG
rJMFF015O24+          ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAACGG
rJMFF017A04+          ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAACGG
                      ____________________________________________________________
consensus             ATTCTATGAATGTACTGCCCTTTTCCTACCTTTACCTCATATAGTTGTATGGCCGAACGG
 
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rJMSF021L07+          CCCAAAACAGTATTCTGCACTTATGTCTACTCT                           
rJMFF015O24+          CCCAAAACAGTATTCTGCACTTATGTCTACTCTGCAATATTTCTACTCCGTTCTCTCGGT
rJMFF017A04+          CCCAAAACAGTATTCTGCACTTATGTCTACTCTGCAATATTTCTACTCCGTTCTCTCGGT
                      ____________________________________________________________
consensus             CCCAAAACAGTATTCTGCACTTATGTCTACTCTGCAATATTTCTACTCCGTTCTCTCGGT