Contig 005387:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016P15Sequence526003136 (3)ref|XP_009785320.1|2e-26PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]731005387 (2)ref|XP_009617901.1|9e-68PREDICTED: uncharacterized protein At1g04910-like [Nicotiana tomentosiformis]
JMFF028E08Sequence559003136 (3)ref|XP_009785320.1|8e-33PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]727005387 (2)ref|XP_009617901.1|3e-67PREDICTED: uncharacterized protein At1g04910-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF028E08+                                                              AAGGCTTT
rJMFF016P15+                                                           CCTAAGGCTTT
                      ____________________________________________________________
consensus                                                              CCTAAGGCTTT
 
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rJMFF028E08+          TTGTTTACTTCCCATCATCTATGAAGCAGAAAAGGATGAACCCATACGCCTGTTTGGGTA
rJMFF016P15+          TTGTTTACTTCCCATCATCTATGAAGCAGAAAAGGATGAACCCATACGCCTGTTTGGGTA
                      ____________________________________________________________
consensus             TTGTTTACTTCCCATCATCTATGAAGCAGAAAAGGATGAACCCATACGCCTGTTTGGGTA
 
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rJMFF028E08+          TGTTTGACACCCTGATGTTGAGACCAGAGTTGCAGGAATCCATAGACTCCATGATTGGAA
rJMFF016P15+          TGTTTGACACCCTGATGTTGAGACCAGAGTTGCAGGAATCCATAGACTCCATGATTGGAA
                      ____________________________________________________________
consensus             TGTTTGACACCCTGATGTTGAGACCAGAGTTGCAGGAATCCATAGACTCCATGATTGGAA
 
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rJMFF028E08+          CACTGAAAACCCTCAACCCCAATTCAGAAGGACGATTCGTCGCGGTGGACTATAAGGCTG
rJMFF016P15+          CACTGAAAACCCTCAACCCCAATTCAGAAGGACGATTCGTCGCGGTGGACTATAAGGCTG
                      ____________________________________________________________
consensus             CACTGAAAACCCTCAACCCCAATTCAGAAGGACGATTCGTCGCGGTGGACTATAAGGCTG
 
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rJMFF028E08+          TTGAAGCCATGCAACCAGGAAGTAGCAGTTTTGATGCAAATGAGATAGCTTCTTTTATGA
rJMFF016P15+          TTGAAGCCATGCAACCAGGAAGTAGCAGTTTTGATGCAAATGAGATAGCTTCTTTTATGA
                      ____________________________________________________________
consensus             TTGAAGCCATGCAACCAGGAAGTAGCAGTTTTGATGCAAATGAGATAGCTTCTTTTATGA
 
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rJMFF028E08+          AGAAGATTGGTTTTGAAAACAAAACAACTGTTTATTTGACTCTAAATGGCTGGCACACAA
rJMFF016P15+          AGAAGATTGGTTTTGAAAACAAAACAACTGTTTATTTGACTCTAAATGGCTGGCACACAA
                      ____________________________________________________________
consensus             AGAAGATTGGTTTTGAAAACAAAACAACTGTTTATTTGACTCTAAATGGCTGGCACACAA
 
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rJMFF028E08+          GCATTGAGCATTTCAGAAACGTATTTCCCAACACCTTCACCAAGGATGCAATCATTCCAG
rJMFF016P15+          GCATTGAGCATTTCAGAAACGTATTTCCCAACACCTTCACCAAGGATGCAATCATTCCAG
                      ____________________________________________________________
consensus             GCATTGAGCATTTCAGAAACGTATTTCCCAACACCTTCACCAAGGATGCAATCATTCCAG
 
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rJMFF028E08+          CAGATGAGAAGTCCAAGTTTCTGGATCCTGGAAGGCCAGAATTGAAGCAAATTATAGACT
rJMFF016P15+          CAGATGAGAAGTCCAAGTTTCTGGATCCTGGAAGGCCAGAATTGAAGCAAATTATAGACT
                      ____________________________________________________________
consensus             CAGATGAGAAGTCCAAGTTTCTGGATCCTGGAAGGCCAGAATTGAAGCAAATTATAGACT
 
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rJMFF028E08+          TCTATGTATCTTCTGCAGCTGATGTTTATGTACCAACATCGTCAAATGTATTTTCTGACA
rJMFF016P15+          TCTATGTATCTTCTGCAGCTGATGTTTATGTACCAACATCGTCAAATGTATTTTCTGACA
                      ____________________________________________________________
consensus             TCTATGTATCTTCTGCAGCTGATGTTTATGTACCAACATCGTCAAATGTATTTTCTGACA
 
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rJMFF028E08+          ATGTGATTGCAAGGAGAATCGGCAGTGGGAAAACGCAAGTTCTTGTGCCCACCAACAGAT
rJMFF016P15+          ATGTGATTGCAAGGAGAATCGGCAGTGGGAAAACGCAAGTTCTTGTGCCCACCAACAGAT
                      ____________________________________________________________
consensus             ATGTGATTGCAAGGAGAATCGGCAGTGGGAAAACGCAAGTTCTTGTGCCCACCAACAGAT
 
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rJMFF028E08+          CTTCACTTTCTGCAGAAGGCTATATTCCTCCTTACATATCCAAGAGCAAGCATTGGGCGT
rJMFF016P15+          CTTCACTTTCTGCAGAAGACTATATTCCTCCTTACATATCCAAGAGCAAGCATTGGGCGT
                      ____________________________________________________________
consensus             CTTCACTTTCTGCAGAAGGCTATATTCCTCCTTACATATCCAAGAGCAAGCATTGGGCGT
 
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rJMFF028E08+          ATTCATGCTTTTGTTCATAAAATCATAAATCAAATGAAGGATGGAGGGGGGAATGAATAA
rJMFF016P15+          ATTCATGCTTTTGTTCATAAAATCATAAATCAAATGAAGGATGGAGGGGGGAATGAATAA
                      ____________________________________________________________
consensus             ATTCATGCTTTTGTTCATAAAATCATAAATCAAATGAAGGATGGAGGGGGGAATGAATAA
 
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rJMFF028E08+          ATCAAGATTGGTTGAAGTTTCGCATACTATTGCGCCTTAGCTTGTAAACCAATCAAAAG 
rJMFF016P15+          ATCAAGATTGGTTGAAGTTTCGCATACTATTGCGCCTTAGCTTGTAAACCAATCAAAAGG
                      ____________________________________________________________
consensus             ATCAAGATTGGTTGAAGTTTCGCATACTATTGCGCCTTAGCTTGTAAACCAATCAAAAGG