| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015F23 | Sequence | 500 | 005380 (6) | gb|EMT17583.1| | 2e-22 | Protein H2A.6 [Aegilops tauschii] | 606 | 005380 (6) | ref|WP_039311042.1| | 1e-29 | hypothetical protein [Paenibacillus sp. IHB B 3415] gb|AEC10950.1| histone H2A [ |
| JMSF001G18 | Sequence | 429 | 005380 (6) | gb|EMT17583.1| | 8e-23 | Protein H2A.6 [Aegilops tauschii] | 711 | 005380 (6) | ref|WP_039311042.1| | 3e-29 | hypothetical protein [Paenibacillus sp. IHB B 3415] gb|AEC10950.1| histone H2A [ |
| JMSF033C14 | Sequence | 521 | 005380 (6) | gb|EMT17583.1| | 2e-22 | Protein H2A.6 [Aegilops tauschii] | 723 | 005380 (6) | ref|WP_039311042.1| | 3e-29 | hypothetical protein [Paenibacillus sp. IHB B 3415] gb|AEC10950.1| histone H2A [ |
This contig is upended
. : . : . : . : . : . :
JMSF001G18- GCTCAATCCTCCGCATTAAGCGCTCCAATCTTTTTATACCC
JMFF015F23- ATCGTGCTCAATCCTCCGCATTAAGCGCTCCAATCTTTTTATACCC
JMSF033C14- GATCGTGCTCAATCCTCCGCATTAAGCGCTCCAATCTTTTTATACCC
____________________________________________________________
consensus GATCGTGCTCAATCCTCCGCATTAAGCGCTCCAATCTTTTTATACCC
. : . : . : . : . : . :
JMSF001G18- AAAGAGTTTAGCTTAATTTAGCTTATCATTCCATGGATGCTCCGGCGGCGAAGATAAAGA
JMFF015F23- AAAGAGTTTAGCTTAATTTAGCTTATCATTCCATGGATGCTCCGGCGGCGAAGATAAAGA
JMSF033C14- AAAGAGTTTAGCTTAATTTAGCTTATCATTCCATGGATGCTCCGGCGGCGAAGATAAAGA
____________________________________________________________
consensus AAAGAGTTTAGCTTAATTTAGCTTATCATTCCATGGATGCTCCGGCGGCGAAGATAAAGA
. : . : . : . : . : . :
JMSF001G18- AGGGTGCCGGCGGCCGGAAAGGCGGCGGCCCGAAGAAGAAGCCGGTTACCCGCTCCGTCC
JMFF015F23- AGGGTGCCGGCGGCCGGAAAGGCGGCGGCCCGAAGAAGAAGCCGGTTACCCGCTCCGTCC
JMSF033C14- AGGGTGCCGGCGGCCGGAAAGGCGGCGGCCCGAAGAAGAAGCCGGTTACCCGCTCCGTCC
rJMSF033C14+ AAGAAGAAGCCGGTTACCCGCTCCGTCC
rJMSF001G18+ GTCC
____________________________________________________________
consensus AGGGTGCCGGCGGCCGGAAAGGCGGCGGCCCGAAGAAGAAGCCGGTTACCCGCTCCGTCC
. : . : . : . : . : . :
JMSF001G18- GTGCCGGGCTTCAGTTCCCGGTGGGTAGGATCGGGCGTTACCTCAAGAAGGGCCGCTATG
JMFF015F23- GTGCCGGGCTTCAGTTCCCGGTGGGTAGGATCGGGCGTTACCTCAAGAAGGGCCGCTATG
JMSF033C14- GTGCCGGGCTTCAGTTCCCGGTGGGTAGGATCGGGCGTTACCTCAAGAAGGGCCGCTATG
rJMSF033C14+ GTGCCGGGCTTCAGTTCCCGGTGGGTAGGATCGGGCGTTACCTCAAGAAGGGCCGCTATG
rJMSF001G18+ GTGCCGGGCTTCAGTTCCCGGTGGGTAGGATCGGGCGTTACCTCAAGAAGGGCCGCTATG
____________________________________________________________
consensus GTGCCGGGCTTCAGTTCCCGGTGGGTAGGATCGGGCGTTACCTCAAGAAGGGCCGCTATG
. : . : . : . : . : . :
JMSF001G18- CCCAGCGTGTCGGCACCGGCGCTCCTGTTTACATGGCTGCCGTTCTCGAATACCTGGCTG
JMFF015F23- CCCAGCGTGTCGGCACCGGCGCTCCTGTTTACATGGCTGCCGTTCTCGAATACCTGGCTG
JMSF033C14- CCCAGCGTGTCGGCACCGGCGCTCCTGTTTACATGGCTGCCGTTCTCGAATACCTGGCTG
rJMSF033C14+ CCCAGCGTGTCGGCACCGGCGCTCCTGTTTACATGGCTGCCGTTCTCGAATACCTGGCTG
rJMSF001G18+ CCCAGCGTGTCGGCACCGGCGCTCCTGTTTACATGGCTGCCGTTCTCGAATACCTGGCTG
rJMFF015F23+ TGGCTG
____________________________________________________________
consensus CCCAGCGTGTCGGCACCGGCGCTCCTGTTTACATGGCTGCCGTTCTCGAATACCTGGCTG
. : . : . : . : . : . :
JMSF001G18- CCGAGGTATGTAGTGATTTATGTGTGTCTGTTTGTTTTACACTACTGGAAATTGTGAAAT
JMFF015F23- CCGAGGTATGTAGTGATTTATGTGTGTCTGTTTGTTTTACACTACTGGAAATTGTGAAAT
JMSF033C14- CCGAGGTATGTAGTGATTTATGTGTGTCTGTTTGTTTTACACTACTGGAAATTGTGAAAT
rJMSF033C14+ CCGAGGTATGTAGTGATTTATGTGTGTCTGTTTGTTTTACACTACTGGAAATTGTGAAAT
rJMSF001G18+ CCGAGGTATGTAGTGATTTATGTGTGTCTGTTTGTTTTACACTACTGGAAATTGTGAAAT
rJMFF015F23+ CCGAGGTATGTAGTGATTTATGTGTGTCTGTTTGTTTTACACTACTGGAAATTGTGAAAT
____________________________________________________________
consensus CCGAGGTATGTAGTGATTTATGTGTGTCTGTTTGTTTTACACTACTGGAAATTGTGAAAT
. : . : . : . : . : . :
JMSF001G18- TTTCGATCACTTGAAAGTAAAAAGTGGTCGAAAATAATTTTTTTAGATATCAAAAGTGAT
JMFF015F23- TTTCGATCACTTGAAAGTAAAAAGTGGTCGAAAATAATTTTTTTAGATATCAAAAGTGAT
JMSF033C14- TTTCGATCACTTGAAAGTAAAAAGTGGTCGAAAATAATTTTTTTAGATATCAAAAGTGAT
rJMSF033C14+ TTTCGATCACTTGAAAGTAAAAAGTGGTCGAAAATAATTTTTTTAGATATCAAAAGTGAT
rJMSF001G18+ TTTCGATCACTTGAAAGTAAAAAGTGGTCGAAAATAATTTTTTTAGATATCAAAAGTGAT
rJMFF015F23+ TTTCGATCACTTGAAAGTAAAAAGTGGTCGAAAATAATTTTTTTAGATATCAAAAGTGAT
____________________________________________________________
consensus TTTCGATCACTTGAAAGTAAAAAGTGGTCGAAAATAATTTTTTTAGATATCAAAAGTGAT
. : . : . : . : . : . :
JMSF001G18- TGGAACAAGATTTTCGATTTGATTT
JMFF015F23- TGGAACAAGATTTTCGATTTGATTTAAGATAACTTTTANGTAGTCTGAAATTTCATAATT
JMSF033C14- TGGAACAAGATTTTCGATTTGATTTAAGATAACTTTTAGGTAGTCTGAAATTTCATAATT
rJMSF033C14+ TGGAACAAGATTTTCGATTTGATTTAAGATAACTTTTAGGTAGTCTGAAATTTCATAATT
rJMSF001G18+ TGGAACAAGATTTTCGATTTGATTTAAGATAACTTTTAGGTAGTCTGAAATTTCATAATT
rJMFF015F23+ TGGAACAAGATTTTCGATTTGATTTAAGATAACTTTTAGGTAGTCTGAAATTTCATAATT
____________________________________________________________
consensus TGGAACAAGATTTTCGATTTGATTTAAGATAACTTTTAGGTAGTCTGAAATTTCATAATT
. : . : . : . : . : . :
JMFF015F23- ACCAGTAGTGTCAGATTTATGTTTGTGATTTACG
JMSF033C14- ACCAGTAGTGTCAGATTTATGTTTGTGATTTACGAGGTGGGGTTTTGGT
rJMSF033C14+ ACCAGTAGTGTCAGATTTATGTTTGTGATTTACGAGGTGGGGTTTTGGTTGGTTATAGGT
rJMSF001G18+ ACCAGTAGTGTCAGATTTATGTTTGTGATTTACGAGGTGGGGTTTTGGTTGGTTATAGGT
rJMFF015F23+ ACCAGTAGTGTCAGATTTATGTTTGTGATTTACGAGGTGGGGTTTTGGTTGGTTATAGGT
____________________________________________________________
consensus ACCAGTAGTGTCAGATTTATGTTTGTGATTTACGAGGTGGGGTTTTGGTTGGTTATAGGT
. : . : . : . : . : . :
rJMSF033C14+ TTTGGAGTTGGCTGGAAATGCAGCGAGGGACAACAAGAAGAACAGGATCATTCCCAGACA
rJMSF001G18+ TTTGGAGTTGGCTGGAAATGCAGCGAGGGACAACAAGAAGAACAGGATCATTCCCAGACA
rJMFF015F23+ TTTGGAGTTGGCTGGAAATGCAGCGAGGGACAACAAGAAGAACAGGATCATTCCCAGACA
____________________________________________________________
consensus TTTGGAGTTGGCTGGAAATGCAGCGAGGGACAACAAGAAGAACAGGATCATTCCCAGACA
. : . : . : . : . : . :
rJMSF033C14+ TGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTGGGGAAGTTGTTGGCTGGGGTGACCAT
rJMSF001G18+ TGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTGGGGAAGTTGTTGGCTGGGGTGACCAT
rJMFF015F23+ TGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTGGGGAAGTTGTTGGCTGGGGTGACCAT
____________________________________________________________
consensus TGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTGGGGAAGTTGTTGGCTGGGGTGACCAT
. : . : . : . : . : . :
rJMSF033C14+ TGCCCATGGTGGGGTGCTGCCCAACATAAACCCTGTGTTGTTGCCCAAGAAGAGTGGATC
rJMSF001G18+ TGCCCATGGTGGGGTGCTGCCCAACATAAACCCTGTGTTGTTGCCCAAGAAGAGTGGATC
rJMFF015F23+ TGCCCATGGTGGGGTGCTGCCCAACATAAACCCTGTGTTGTTGCCCAAGAAGAGTGGATC
____________________________________________________________
consensus TGCCCATGGTGGGGTGCTGCCCAACATAAACCCTGTGTTGTTGCCCAAGAAGAGTGGATC
. : . : . : . : . : . :
rJMSF033C14+ TGAGGCAACAAAGGAGCCAAAGGCAAAGGCTGCCAAGTCCCCCAAGAAGAAGGCTGCTTG
rJMSF001G18+ TGAGGCAACAAAGGAGCCAAAGGCAAAGGCTGCCAAGTCCCCCAAGAAGAAGGCTGCTTG
rJMFF015F23+ TGAGGCAACAAAGGAGCCAAAGGCAAAGGCTGCCAAGTCCCCCAAGAAGAAGGCTGCTTG
____________________________________________________________
consensus TGAGGCAACAAAGGAGCCAAAGGCAAAGGCTGCCAAGTCCCCCAAGAAGAAGGCTGCTTG
. : . : . : . : . : . :
rJMSF033C14+ ATTTGATAGTGTAGATTAGTGGGGTTTTGTCCCTTGTTTCTGTATGTGACTTGGGGCCAT
rJMSF001G18+ ATTTGATAGTGTAGATTAGTGGGGTTTTGTCCCTTGTTTCTGTATGTGACTTGGGGCCAT
rJMFF015F23+ ATTTGATAGTGTAGATTAGTGGGGTTTTGTCCCTTGTTTCTGTATGTGACTTGGGGCCAT
____________________________________________________________
consensus ATTTGATAGTGTAGATTAGTGGGGTTTTGTCCCTTGTTTCTGTATGTGACTTGGGGCCAT
. : . : . : . : . : . :
rJMSF033C14+ TCTTTGCTTATAGAAGGTGTAATTGTTAGTTGTGT
rJMSF001G18+ TCTTTGCTTATAGAAGGTGTAATTGTTAGTTGTGTTGTAAAC
rJMFF015F23+ TCTTTGCTTATAGAAGGTGTAATTGTTAGTTGTGTTGTAAACGTAATGTTTGGTTATCAA
____________________________________________________________
consensus TCTTTGCTTATAGAAGGTGTAATTGTTAGTTGTGTTGTAAACGTAATGTTTGGTTATCAA