Contig 005370:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012L14Sequence405003913 (7)ref|XP_006339100.1|2e-10PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube770005370 (6)gb|EYU41567.1|2e-72hypothetical protein MIMGU_mgv1a003249mg [Erythranthe guttata]
JMFF026K13Sequence538003913 (7)ref|XP_006339100.1|3e-37PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube786005370 (6)gb|EYU41567.1|2e-77hypothetical protein MIMGU_mgv1a003249mg [Erythranthe guttata]
JMSF013C17Sequence442003913 (7)ref|XP_006339100.1|6e-15PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube758005370 (6)ref|XP_009593672.1|4e-88PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana tomento
JMSF013P20Sequence253003913 (7)789005370 (6)ref|XP_009593672.1|9e-101PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana tomento
JMSF051I15Sequence662003913 (7)ref|XP_006339100.1|5e-63PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube724005370 (6)gb|EYU41567.1|4e-79hypothetical protein MIMGU_mgv1a003249mg [Erythranthe guttata]
JMSF053M05Sequence661003913 (7)ref|XP_006339100.1|5e-63PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube869005370 (6)ref|XP_009593672.1|6e-118PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana tomento

Alignment

This contig is upended


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rJMSF053M05+                                                 GAGCTGAAGCATACTGCAAGT
                      ____________________________________________________________
consensus                                                    GAGCTGAAGCATACTGCAAGT
 
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rJMSF013P20+                                                          ACATGNACTTTG
rJMSF053M05+          ATTACAACCTCAAGGATGAAAATATAGTAGTAATAACCAGTGGAGCTAACATGAACTTTG
                      ____________________________________________________________
consensus             ATTACAACCTCAAGGATGAAAATATAGTAGTAATAACCAGTGGAGCTAACATGAACTTTG
 
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rJMSF013P20+          ATAGANTAAGANTGGTAACTGNACTAGCAGATGTTGGTAGAAAACGTGAAGCTGTTCTTT
rJMSF053M05+          ATAGACTAAGATTGGTAACTGAACTAGCAGATGTTGGTAGAAAACGTGAAGCTGTTCTTT
                      ____________________________________________________________
consensus             ATAGACTAAGATTGGTAACTGAACTAGCAGATGTTGGTAGAAAACGTGAAGCTGTTCTTT
 
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rJMSF013P20+          CAACCAATTTGCCTGAAGAGCCAGGGAGTTTCAAGAAATTTGTTGAACTTGTGGGGCCCA
rJMSF053M05+          CAACCAATTTGCCTGAAGAGCCAGGGAGTTTCAAGAAATTTGTTGAACTTGTGGGGCCCA
rJMSF013C17+           AACCAATTTGCCTGAAGAGCCAGGGAGTTTCAAGAAATTTGTTGAACTTGTGGGGCCCA
rJMSF051I15+                                                       AACTTGTGGGGCCCA
rJMFF026K13+                                                               GGGCCCA
                      ____________________________________________________________
consensus             CAACCAATTTGCCTGAAGAGCCAGGGAGTTTCAAGAAATTTGTTGAACTTGTGGGGCCCA
 
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rJMSF013P20+          TGAACATTACTGAATTCAGATACAGATACAGTTCTGGTCAAGGACAAACTCTGGTACTAT
rJMSF053M05+          TGAACATTACTGAATTCAGATACAGATACAGTTCTGGTCAAGGACAAACTCTGGTACTAT
rJMSF013C17+          TGAACATTACTGAATTCAGATACAGATACAGTTCTGGTCAAGGACAAACTCTGGTACTAT
rJMSF051I15+          TGAACATTACTGAATTCAGATACAGATACAGTTCTGGTCAAGGACAAACTCTGGTACTAT
rJMFF026K13+          TGAACATTACTGAATTCAGATACAGATACAGTTCTGGTCAAGGACAAACTCTGGTACTAT
rJMFF012L14+                    TGAATTCAGATACAGATACAGTTCTGGTCAAGGACAAACTCTGGTACTAT
                      ____________________________________________________________
consensus             TGAACATTACTGAATTCAGATACAGATACAGTTCTGGTCAAGGACAAACTCTGGTACTAT
 
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rJMSF013P20+          ACAGTGTTGGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGACACTCT
rJMSF053M05+          ACAGTGTTGGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGACACTCT
rJMSF013C17+          ACAGTGTTGGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGACACTCT
rJMSF051I15+          ACAGTGTTGGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGACACTCT
rJMFF026K13+          ACAGTGTTGGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGACACTCT
rJMFF012L14+          ACAGTGTTGGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGACACTCT
                      ____________________________________________________________
consensus             ACAGTGTTGGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGACACTCT
 
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rJMSF013P20+          CTCAATTACATACCATTGATCTGACAGATAATGACCTTGTCAAAGATCATCTACGCCATT
rJMSF053M05+          CTCAATTACATACCATTGATCTGACAGATAATGACCTTGTCAAAGATCATCTACGCCATT
rJMSF013C17+          CTCAATTACATACCATTGATCTGACAGATAATGACCTTGTCAAAGATCATCTACGCCATT
rJMSF051I15+          CTCAATTACATACCATTGATCTGACAGATAATGACCTTGTCAAAGATCATCTACGCCATT
rJMFF026K13+          CTCAATTACATACCATTGATCTGACAGATAATGACCTTGTCAAAGATCATCTACGCCATT
rJMFF012L14+          CTCAATTACATACCATTGATCTGACAGATAATGACCTTGTCAAAGATCATCTACGCCATT
                      ____________________________________________________________
consensus             CTCAATTACATACCATTGATCTGACAGATAATGACCTTGTCAAAGATCATCTACGCCATT
 
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rJMSF013P20+          TGATTGGTGGCCGATCTAGTGTACAAGATGAACTTCTTTGCCGGTTTGTTTTCCCAGAGA
rJMSF053M05+          TGATTGGTGGCCGATCTAGTGTACAAGATGAACTTCTTTGCCGGTTTGTTTTCCCAGAGA
rJMSF013C17+          TGATTGGTGGCCGATCTAGTGTACAAGATGAACTTCTTTGCCGGTTTGTTTTCCCAGAGA
rJMSF051I15+          TGATTGGTGGCCGATCTAGTGTACAAGATGAACTTCTTTGCCGGTTTGTTTTCCCAGAGA
rJMFF026K13+          TGATTGGTGGCCGATCTAGTGTACAAGATGAACTTCTTTGCCGGTTTGTTTTCCCAGAGA
rJMFF012L14+          TGATTGGTGGCCGATCTAGTGTACAAGATGAACTTCTTTGCCGGTTTGTTTTCCCAGAGA
                      ____________________________________________________________
consensus             TGATTGGTGGCCGATCTAGTGTACAAGATGAACTTCTTTGCCGGTTTGTTTTCCCAGAGA
 
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rJMSF013P20+          GGCCTGGTGCCCTAATGAAATTTTTAGACGCTTTCAGCCCACGATGGAATATAACTTTGT
rJMSF053M05+          GGCCTGGTGCCCTAATGAAATTTTTAGACGCTTTCAGCCCACGATGGAATATAACTTTGT
rJMSF013C17+          GGCCTGGTGCCCTAATGAAATTTTTAGACGCTTTCAGCCCACGATGGAATATAACTTTGT
rJMSF051I15+          GGCCTGGTGCCCTAATGAAATTTTTAGACGCTTTCAGCCCACGATGGAATATAACTTTGT
rJMFF026K13+          GGCCTGGTGCCCTAATGAAATTTTTAGACGCTTTCAGCCCACGATGGAATATAACTTTGT
rJMFF012L14+          GGCCTGGTGCCCTAATGAAATTTTTAGACGCTTTCAGCCCACGATGGAATATAACTTTGT
                      ____________________________________________________________
consensus             GGCCTGGTGCCCTAATGAAATTTTTAGACGCTTTCAGCCCACGATGGAATATAACTTTGT
 
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rJMSF013P20+          TCCATTACCGTTCACAGGGAGAAGCTGGTGCAAATGTGTTGGTTGGTCTTCAAGTTGCCA
rJMSF053M05+          TCCATTACCGTTCACAGGGAGAAGCTGGTGCAAATGTGTTGGTTGGTCTTCAAGTTGCCA
rJMSF013C17+          TCCATTACCGTTCACAGGGAGAAGCTGGTGCAAATGTGTTGGTTGGTCTTCAAGTTGCCA
rJMSF051I15+          TCCATTACCGTTCACAGGGAGAAGCTGGTGCAAATGTGTTGGTTGGTCTTCAAGTTGCCA
rJMFF026K13+          TCCATTACCGTTCACAGGGAGAAGCTGGTGCAAATGTGTTGGTTGGTCTTCAAGTTGCCA
rJMFF012L14+          TCCATTACCGTTCACAGGGAGAAGCTGGTGCAAATGTGTTGGTTGGTCTTCAAGTTGCCA
                      ____________________________________________________________
consensus             TCCATTACCGTTCACAGGGAGAAGCTGGTGCAAATGTGTTGGTTGGTCTTCAAGTTGCCA
 
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rJMSF013P20+          GCAACGAGATAGATGAGTTTAAGCAACGAGCCAACAATCTGGGTTTTGAGTATGCTGTGG
rJMSF053M05+          GCAACGAGATAGATGAGTTTAAGCAACGAGCCAACAATCTGGGTTTTGAGTATGCTGTGG
rJMSF013C17+          GCAACGAGATAGATGAGTTTAAGCAACGAGCCAACAATCTGGGTTTTGAGTATGCTGTGG
rJMSF051I15+          GCAACGAGATAGATGAGTTTAAGCAACGAGCCAACAATCTGGGTTTTGAGTATGCTGTGG
rJMFF026K13+          GCAACGAGATAGATGAGTTTAAGCAACGAGCCAACAATCTGGGTTTTGAGTATGCTGTGG
rJMFF012L14+          GCAACGAGATAGATGAGTTTAAGCAACGAGCCAACAATCTGGGTTTTGAGTATGCTGTGG
                      ____________________________________________________________
consensus             GCAACGAGATAGATGAGTTTAAGCAACGAGCCAACAATCTGGGTTTTGAGTATGCTGTGG
 
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rJMSF013P20+          AAACCTGTAACGAGGCTTTCCAACTCTTGATGCATTAAGCAGGTCCATCAGAATATCACT
rJMSF053M05+          AAACCTGTAACGAGGCTTTCCAACTCTTGATGCATTAAGCAGGTCCATCAGAATATCACT
rJMSF013C17+          AAACCTGTAACGAGGCTTTCCAACTCTTGATGCATTAAGCAGGTCCATCAGAATATCACT
rJMSF051I15+          AAACCTGTAACGAGGCTTTCCAACTCTTGATGCATTAAGCAGGTCCATCAGAATATCACT
rJMFF026K13+          AAACCTGTAACGAGGCTTTCCAACTCTTGATGCATTAAGCAGGTCCATCAGAATATCACT
rJMFF012L14+          AAACCTGTAACGAGGCTTTCCAACTCTTGATGCATTAAGCAGGTCCATCAGAATATCACT
                      ____________________________________________________________
consensus             AAACCTGTAACGAGGCTTTCCAACTCTTGATGCATTAAGCAGGTCCATCAGAATATCACT
 
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rJMSF013P20+          CATGCTTGGCGCAAAAGCTTTATAGCATTTTACAGTCCTATAGATTTCCCAAGAAACCCG
rJMSF053M05+          CATGCTTGGCGCAAAAGCTTTATAGCATTTTACAGTCCTATAGATTTCCCAAGAAACCCG
rJMSF013C17+          CATGCTTGGCGCAAAAGCTTTATAGCATTTTACAGTCCTATAGATTTCCCAAGAAACCCG
rJMSF051I15+          CATGCTTGGCGCAAAAGCTTTATAGCATTTTACAGTCCTATAGATTTCCCAAGAAACCCG
rJMFF026K13+          CATGCTTGGCGCAAAAGCTTTATAGCATTTTACAGTCCTATAGATTTCCCAAGAAACCCG
rJMFF012L14+          CATGCTTGGCGCAAAAGCTTTATAGCATTTTACAGTCCTATAGATTTCCCAAGAAACCCG
                      ____________________________________________________________
consensus             CATGCTTGGCGCAAAAGCTTTATAGCATTTTACAGTCCTATAGATTTCCCAAGAAACCCG
 
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rJMSF013P20+          TTTTCAGCAGTACTATTAAGGTTATGTAAAACCTATTGTGCCATGCTATGACTGTAGTAC
rJMSF053M05+          TTTTCAGCAGTACTATTAAGGTTATGTAAAACCTATTGTGCCATGCTATGACTGTAGTAC
rJMSF013C17+          TTTTCAGCAGTACTATTAAGGTTATGTAAAACCTATTGTGCCATGCTATGACTGTAGTAC
rJMSF051I15+          TTTTCAGCAGTACTATTAAGGTTATGTAAAACCTATTGTGCCATGCTATGACTGTAGTAC
rJMFF026K13+          TTTTCAGCAGTACTATTAAGGTTATGTAAAACCTATTGTGCCATGCTATGACTGTAGTAC
rJMFF012L14+          TTTTCAGCAGTACTATTAAGGTTATGTAAAACCTATTGTGCCATGCTATGACTGTAGTAC
                      ____________________________________________________________
consensus             TTTTCAGCAGTACTATTAAGGTTATGTAAAACCTATTGTGCCATGCTATGACTGTAGTAC
 
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rJMSF013P20+          TCCTTGGTGTTATTTCTTGATGTTTTCAGGCCTGCCGCCTGCATTTCACATTA       
rJMSF053M05+          TCCTTGGTGTTATTTCTTGATGTTTTCAGGCCTGCCGCCTGCATTTCACATTACTTCCCT
rJMSF013C17+          TCCTTGGTGTTATTTCTTGATGTTTTCAGGCCTGCCGCCTGCATTTCACATTACTTCCCT
rJMSF051I15+          TCCTTGGTGTTATTTCTTGATGTTTTCAGGCCTGCCGCCTGCATTTCACATTACTTCCCT
rJMFF026K13+          TCCTTGGTGTTATTTCTTGATGTTTTCAGGCCTGCCGCCTGCATTTCACATTACTTCCCT
rJMFF012L14+          TCCTTGGTGTTATTTCTTGATGTTTTCAGGCCTGCCGCCTGCATTTCACATTACTTCCCT
                      ____________________________________________________________
consensus             TCCTTGGTGTTATTTCTTGATGTTTTCAGGCCTGCCGCCTGCATTTCACATTACTTCCCT
 
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rJMSF053M05+          GATGTATT                                                    
rJMSF013C17+          GATGTATTTTGGTAATGCAGCATGTATTGTGCC                           
rJMSF051I15+          GATGTATTTTGGTAATGCAGCATGTATTGTGCCCTTTTATCATCACCCT           
rJMFF026K13+          GATGTATTTTGGTAATGCAGCATGTATTGTGCCCTTTTATCATCACCCTATAATGTCATA
rJMFF012L14+          GATGTATTTTGGTAATGCAGCATGTATTGTGCCCTTTTATCATCACCCTATAATGTCATA
                      ____________________________________________________________
consensus             GATGTATTTTGGTAATGCAGCATGTATTGTGCCCTTTTATCATCACCCTATAATGTCATA
 
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rJMFF026K13+          TCGTATGTGTACAAATTTGTGCACGGTGCATGTATATACAAATTTCATTGAAACCGAGT 
rJMFF012L14+          TCGTATGTGTACAAATTTGTGCACGGTGCATGTATATACAAATTTCATTGAAACCGAGTA
                      ____________________________________________________________
consensus             TCGTATGTGTACAAATTTGTGCACGGTGCATGTATATACAAATTTCATTGAAACCGAGTA