Contig 005369:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012J15Sequence473002317 (17)724005369 (7)gb|AAR83896.1|2e-32RNA helicase PRH75 [Capsicum annuum]
JMFF025M23Sequence474002317 (17)765005369 (7)gb|AAR83896.1|4e-32RNA helicase PRH75 [Capsicum annuum]
JMFF039D01Sequence470002317 (17)716005369 (7)gb|AAR83896.1|2e-32RNA helicase PRH75 [Capsicum annuum]
JMSF016K09Sequence738005369 (7)gb|AAR83896.1|3e-41RNA helicase PRH75 [Capsicum annuum]
JMSF017I10Sequence441002317 (17)735005369 (7)gb|AAR83896.1|3e-41RNA helicase PRH75 [Capsicum annuum]
JMSF027N06Sequence610002317 (17)gb|EYU19497.1|7e-12hypothetical protein MIMGU_mgv1a002250mg [Erythranthe guttata]739005369 (7)gb|AAR83896.1|2e-40RNA helicase PRH75 [Capsicum annuum]
JMSF030M14Sequence667002317 (17)gb|EYU19497.1|3e-24hypothetical protein MIMGU_mgv1a002250mg [Erythranthe guttata]711005369 (7)gb|AAR83896.1|3e-43RNA helicase PRH75 [Capsicum annuum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF017I10+ GCTGCAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTT-CCATGG
rJMSF016K09+ GCTGCAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTT-CCATGG
rJMFF039D01+ CCATGG
rJMSF027N06+ CAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTT-CCATGG
rJMFF025M23+ TAAGGCTGCAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTTCCCATGG
rJMFF012J15+ CCATGG
                      ____________________________________________________________
consensus TAAGGCTGCAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTT-CCATGG
 
. : . : . : . : . : . :
rJMSF030M14+ CCTCCTTTGTAT
rJMSF017I10+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMSF016K09+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMFF039D01+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMSF027N06+ AGAACTGTGTTACTCTACACCNTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMFF025M23+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMFF012J15+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
                      ____________________________________________________________
consensus AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
 
. : . : . : . : . : . :
rJMSF030M14+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMSF017I10+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMSF016K09+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMFF039D01+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMSF027N06+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMFF025M23+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMFF012J15+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
                      ____________________________________________________________
consensus ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
 
. : . : . : . : . : . :
rJMSF030M14+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMSF017I10+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMSF016K09+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMFF039D01+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMSF027N06+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMFF025M23+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMFF012J15+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
                      ____________________________________________________________
consensus TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
 
. : . : . : . : . : . :
rJMSF030M14+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMSF017I10+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMSF016K09+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMFF039D01+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMSF027N06+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMFF025M23+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMFF012J15+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
                      ____________________________________________________________
consensus TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
 
. : . : . : . : . : . :
rJMSF030M14+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMSF017I10+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMSF016K09+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMFF039D01+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMSF027N06+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMFF025M23+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMFF012J15+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
                      ____________________________________________________________
consensus TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
 
. : . : . : . : . : . :
rJMSF030M14+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMSF017I10+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMSF016K09+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMFF039D01+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMSF027N06+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMFF025M23+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMFF012J15+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
                      ____________________________________________________________
consensus CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
 
. : . : . : . : . : . :
rJMSF030M14+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMSF017I10+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMSF016K09+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCGTTTGTGTTTA
rJMFF039D01+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMSF027N06+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMFF025M23+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMFF012J15+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
                      ____________________________________________________________
consensus GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
 
. : . : . : . : . : . :
rJMSF030M14+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMSF017I10+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMSF016K09+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMFF039D01+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMSF027N06+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMFF025M23+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMFF012J15+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
                      ____________________________________________________________
consensus TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
 
. : . : . : . : . : . :
rJMSF030M14+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMSF017I10+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMSF016K09+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMFF039D01+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMSF027N06+ AATGAAGACAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMFF025M23+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMFF012J15+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
                      ____________________________________________________________
consensus AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
 
. : . : . : . : . : . :
rJMSF030M14+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTG
rJMSF017I10+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
rJMSF016K09+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
rJMFF039D01+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
rJMSF027N06+ ACATAGGTTTATTGTTTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTNTTATG
rJMFF025M23+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
rJMFF012J15+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
                      ____________________________________________________________
consensus ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
 
. : . : . : . : . : . :
rJMSF017I10+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
rJMSF016K09+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
rJMFF039D01+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
rJMSF027N06+ TTTTATTTTTAAAGTTGTTCTCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCNAAAATT
rJMFF025M23+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
rJMFF012J15+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
                      ____________________________________________________________
consensus TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
 
. : . : . : . : . : . :
rJMSF017I10+ GCTTGTAGAATTGGGATGCACAACAATC
rJMSF016K09+ GCTTGTAGAATTGGGATGCACAACAATCA
rJMFF039D01+ GCTTGTAGAATTGGGATGCACAACAATCAGTGGATTTTATTATAATTATTAA
rJMSF027N06+ GCTTGTAGAATTGGGATGCACANCAATC
rJMFF025M23+ GCTTGTAGAATTGGGATGCACAACAATCAGTGGATTTTATTATAATTATTAA
rJMFF012J15+ GCTTGTAGAATTGGGATGCACAACAATCAGTGGATTTTATTATAATTATTAAGAAATTAA
                      ____________________________________________________________
consensus GCTTGTAGAATTGGGATGCACAACAATCAGTGGATTTTATTATAATTATTAAGAAATTAA