| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012J15 | Sequence | 473 | 002317 (17) | 724 | 005369 (7) | gb|AAR83896.1| | 2e-32 | RNA helicase PRH75 [Capsicum annuum] | |||
| JMFF025M23 | Sequence | 474 | 002317 (17) | 765 | 005369 (7) | gb|AAR83896.1| | 4e-32 | RNA helicase PRH75 [Capsicum annuum] | |||
| JMFF039D01 | Sequence | 470 | 002317 (17) | 716 | 005369 (7) | gb|AAR83896.1| | 2e-32 | RNA helicase PRH75 [Capsicum annuum] | |||
| JMSF016K09 | Sequence | 738 | 005369 (7) | gb|AAR83896.1| | 3e-41 | RNA helicase PRH75 [Capsicum annuum] | |||||
| JMSF017I10 | Sequence | 441 | 002317 (17) | 735 | 005369 (7) | gb|AAR83896.1| | 3e-41 | RNA helicase PRH75 [Capsicum annuum] | |||
| JMSF027N06 | Sequence | 610 | 002317 (17) | gb|EYU19497.1| | 7e-12 | hypothetical protein MIMGU_mgv1a002250mg [Erythranthe guttata] | 739 | 005369 (7) | gb|AAR83896.1| | 2e-40 | RNA helicase PRH75 [Capsicum annuum] |
| JMSF030M14 | Sequence | 667 | 002317 (17) | gb|EYU19497.1| | 3e-24 | hypothetical protein MIMGU_mgv1a002250mg [Erythranthe guttata] | 711 | 005369 (7) | gb|AAR83896.1| | 3e-43 | RNA helicase PRH75 [Capsicum annuum] |
This contig is upended
. : . : . : . : . : . :
rJMSF017I10+ GCTGCAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTT-CCATGG
rJMSF016K09+ GCTGCAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTT-CCATGG
rJMFF039D01+ CCATGG
rJMSF027N06+ CAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTT-CCATGG
rJMFF025M23+ TAAGGCTGCAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTTCCCATGG
rJMFF012J15+ CCATGG
____________________________________________________________
consensus TAAGGCTGCAGGATATACTGAGATCAAGAGCCGGTCACTTCTCACTT-CCATGG
. : . : . : . : . : . :
rJMSF030M14+ CCTCCTTTGTAT
rJMSF017I10+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMSF016K09+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMFF039D01+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMSF027N06+ AGAACTGTGTTACTCTACACCNTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMFF025M23+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
rJMFF012J15+ AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
____________________________________________________________
consensus AGAACTGTGTTACTCTACACCTTGAGAGTGGGAAGCCTGTCTATTCACCCTCCTTTGTAT
. : . : . : . : . : . :
rJMSF030M14+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMSF017I10+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMSF016K09+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMFF039D01+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMSF027N06+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMFF025M23+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
rJMFF012J15+ ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
____________________________________________________________
consensus ATAATGTCTTGAAGAGGTTCTTATCTGAAGAGACAGCTGAATCAATCAAAGGCTTGACTT
. : . : . : . : . : . :
rJMSF030M14+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMSF017I10+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMSF016K09+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMFF039D01+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMSF027N06+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMFF025M23+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
rJMFF012J15+ TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
____________________________________________________________
consensus TAACAGCTGATGGGACGGGTGCAGTTTTTGATGTGTCTACTGAGGATGTAGATACCTTCA
. : . : . : . : . : . :
rJMSF030M14+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMSF017I10+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMSF016K09+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMFF039D01+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMSF027N06+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMFF025M23+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
rJMFF012J15+ TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
____________________________________________________________
consensus TAGAAGGTGCTAAAAAAGCATATGATGTCAGTCTGGAAGTTGTGAAAACATTGCCTCCAT
. : . : . : . : . : . :
rJMSF030M14+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMSF017I10+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMSF016K09+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMFF039D01+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMSF027N06+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMFF025M23+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
rJMFF012J15+ TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
____________________________________________________________
consensus TGCAAGAAAGGGAACAGAGTCGAGGTGGTGGTAGATTTGGAGGTGGTGGTCGTGGGTTCT
. : . : . : . : . : . :
rJMSF030M14+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMSF017I10+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMSF016K09+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMFF039D01+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMSF027N06+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMFF025M23+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
rJMFF012J15+ CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
____________________________________________________________
consensus CCGGTGGGAGAGGTGGCCGCTTTTCCGGTGGGAGAGGTGGAAGAGGGGGATTTTCTGATC
. : . : . : . : . : . :
rJMSF030M14+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMSF017I10+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMSF016K09+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCGTTTGTGTTTA
rJMFF039D01+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMSF027N06+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMFF025M23+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
rJMFF012J15+ GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
____________________________________________________________
consensus GAAGAAGAGGTGGTGGTGGTGGAAGAGGCCACAAATGGTGAAGAATACCATTTGTGTTTA
. : . : . : . : . : . :
rJMSF030M14+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMSF017I10+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMSF016K09+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMFF039D01+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMSF027N06+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMFF025M23+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
rJMFF012J15+ TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
____________________________________________________________
consensus TCACGCTGCTCATTGTAGAAATTGTTCCATCCATCATATATGGAACATAAATTTTGGGAT
. : . : . : . : . : . :
rJMSF030M14+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMSF017I10+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMSF016K09+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMFF039D01+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMSF027N06+ AATGAAGACAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMFF025M23+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
rJMFF012J15+ AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
____________________________________________________________
consensus AATGAAGAAAAGTGTAGTGTCTGCTGCACATTGTGGAACCTAATTAAGACTTTCTAAGAT
. : . : . : . : . : . :
rJMSF030M14+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTG
rJMSF017I10+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
rJMSF016K09+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
rJMFF039D01+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
rJMSF027N06+ ACATAGGTTTATTGTTTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTNTTATG
rJMFF025M23+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
rJMFF012J15+ ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
____________________________________________________________
consensus ACATAGGTTTATTG-TTTTTTGAAATTACCAACTTTCTAAGATGTAGGTGTTTTATTATG
. : . : . : . : . : . :
rJMSF017I10+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
rJMSF016K09+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
rJMFF039D01+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
rJMSF027N06+ TTTTATTTTTAAAGTTGTTCTCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCNAAAATT
rJMFF025M23+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
rJMFF012J15+ TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
____________________________________________________________
consensus TTTTATTTTTAAAGTTGTT-TCCAAGTTCTATTCTTTTGTATTTTTTTCTCTCTAAAATT
. : . : . : . : . : . :
rJMSF017I10+ GCTTGTAGAATTGGGATGCACAACAATC
rJMSF016K09+ GCTTGTAGAATTGGGATGCACAACAATCA
rJMFF039D01+ GCTTGTAGAATTGGGATGCACAACAATCAGTGGATTTTATTATAATTATTAA
rJMSF027N06+ GCTTGTAGAATTGGGATGCACANCAATC
rJMFF025M23+ GCTTGTAGAATTGGGATGCACAACAATCAGTGGATTTTATTATAATTATTAA
rJMFF012J15+ GCTTGTAGAATTGGGATGCACAACAATCAGTGGATTTTATTATAATTATTAAGAAATTAA
____________________________________________________________
consensus GCTTGTAGAATTGGGATGCACAACAATCAGTGGATTTTATTATAATTATTAAGAAATTAA