Contig 005368:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF012H20+                                       GNCCAAGCAAAAGTGGGAATATATCTCTACA
                      ____________________________________________________________
consensus                                          GNCCAAGCAAAAGTGGGAATATATCTCTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+                   AATGGCTGTGACTAAGAACTCAACCGACGCAATGAAGGATTCTAGGGTCTT
rJMFF012H20+          AAACTTTAAAATGGCTGTGACTAAGAACTCAACCGACGCAATGAAGGATTCTAGGGTCTT
                      ____________________________________________________________
consensus             AAACTTTAAAATGGCTGTGACTAAGAACTCAACCGACGCAATGAAGGATTCTAGGGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          GGAATTTGTTAGCACGGTGAGTTCTCTCCAATATAGGAAGTTGGATTTCGAGGAATTTTG
rJMFF012H20+          GGAATTTGTTAGCACGGTGAGTTCTCTCCAATATAGGAAGTTGGATTTCGAGGAATTTTG
                      ____________________________________________________________
consensus             GGAATTTGTTAGCACGGTGAGTTCTCTCCAATATAGGAAGTTGGATTTCGAGGAATTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          TGCTGCAGCAATAAGTGTTCATCAGCTAGAAGGAATGGAAAGCTGGGAACAGCATGCTCG
rJMFF012H20+          TGCTGCAGCAATAAGTGTTCATCAGCTAGAAGGAATGGAAAGCTGGGAACAGCATGCTCG
                      ____________________________________________________________
consensus             TGCTGCAGCAATAAGTGTTCATCAGCTAGAAGGAATGGAAAGCTGGGAACAGCATGCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          CCAGGGATATGAGTTCTTTGAAAAAGACGGGAACAGGCCTATTATGATAGAAGAACTTGC
rJMFF012H20+          CCAGGGATATGAGTTCTTTGAAAAAGACGGGAACAGGCCTATTATGATAGAAGAACTTGC
                      ____________________________________________________________
consensus             CCAGGGATATGAGTTCTTTGAAAAAGACGGGAACAGGCCTATTATGATAGAAGAACTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          CTCAGAGCTTGGACTTAGTCCTTCGGTTCCAGTTCATGTAGTTCTGCAGGACTGGATAAG
rJMFF012H20+          CTCAGAGCTTGGACTTAGTCCTTCGGTTCCAGTTCATGTAGTTCTGCAGGACTGGATAAG
                      ____________________________________________________________
consensus             CTCAGAGCTTGGACTTAGTCCTTCGGTTCCAGTTCATGTAGTTCTGCAGGACTGGATAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          ACATTCTGACGGAAAGCTCAGCTTCTTGGGGTTTGTCAGGCTTCTGCACGGTCTCTCAGC
rJMFF012H20+          ACATTCTGACGGAAAGCTCAGCTTCTTGGGGTTTGTCAGGCTTCTGCACGGTCTCTCAGC
                      ____________________________________________________________
consensus             ACATTCTGACGGAAAGCTCAGCTTCTTGGGGTTTGTCAGGCTTCTGCACGGTCTCTCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          CCGAGCCATCCAAAAGGCTTGATTATCCTGCTCTCGACTAAATGAAATGCATCCATCTTT
rJMFF012H20+          CCGAGCCATCCAAAAGGCTTGATTATCCTGCTCTCGACTAAATGAAATGCATCCATCTTT
                      ____________________________________________________________
consensus             CCGAGCCATCCAAAAGGCTTGATTATCCTGCTCTCGACTAAATGAAATGCATCCATCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          GAACTAATCTGTGTCGGAGATAGAGTTCTTCGTGTCCAGCGGGGGAGCACATGCCATGCC
rJMFF012H20+          GAACTAATCTGTGTCGGAGATAGAGTTCTTCGTGTCCAGCGGGGGAGCACATGCCATGCC
                      ____________________________________________________________
consensus             GAACTAATCTGTGTCGGAGATAGAGTTCTTCGTGTCCAGCGGGGGAGCACATGCCATGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          TCTACTATTGACAGGGCTGGTCAAGGAATTCTGATCATTCAAAGCCATTTGCAGCATATT
rJMFF012H20+          TCTACTATTGACAGGGCTGGTCAAGGAATTCTGATCATTCAAAGCCATTTGCAGCATATT
                      ____________________________________________________________
consensus             TCTACTATTGACAGGGCTGGTCAAGGAATTCTGATCATTCAAAGCCATTTGCAGCATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          CAATTCTGGGTTTCTCAGAAAATTTTATTTTTCTTGCATTATCTGGTGCTATCAGATCTA
rJMFF012H20+          CAATTCTGGGTTTCTCAGAAAATTTTATTTTTCTTGCATTATCTGGTGCTATCAGATCTA
                      ____________________________________________________________
consensus             CAATTCTGGGTTTCTCAGAAAATTTTATTTTTCTTGCATTATCTGGTGCTATCAGATCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          GAGGATTGTACAGAGGAGGGTAGGTTAAGAAGTGTATGTAGATGATTTAAGCTCAGAACT
rJMFF012H20+          GAGGATTGTACAGAGGAGGGTAGGTTAAGAAGTGTATGTAGATGATTTAAGCTCAGAACT
                      ____________________________________________________________
consensus             GAGGATTGTACAGAGGAGGGTAGGTTAAGAAGTGTATGTAGATGATTTAAGCTCAGAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O05+          GCACTGAAATTAAATGAGTTTCTGTGGCTT                              
rJMFF012H20+          GCACTGAAATTAAATGAGTTTCTGTGGCTTTGGATGTATTCCTTGTGCACTCAATAAAAA
                      ____________________________________________________________
consensus             GCACTGAAATTAAATGAGTTTCTGTGGCTTTGGATGTATTCCTTGTGCACTCAATAAAAA