| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012B08 | Sequence | 459 | 013444 (5) | ref|XP_002269812.1| | 1e-43 | PREDICTED: FAD synthase [Vitis vinifera] emb|CBI30146.3| unnamed protein product | 720 | 005366 (4) | ref|XP_006354376.1| | 5e-52 | PREDICTED: uncharacterized protein LOC102579774 isoform X1 [Solanum tuberosum] |
| JMSF029B01 | Sequence | 663 | 013444 (5) | ref|XP_009598660.1| | 7e-93 | PREDICTED: FAD synthase-like [Nicotiana tomentosiformis] | 715 | 005366 (4) | ref|XP_006354376.1| | 7e-70 | PREDICTED: uncharacterized protein LOC102579774 isoform X1 [Solanum tuberosum] |
| JMSF033I08 | Sequence | 682 | 013444 (5) | ref|XP_009598660.1| | 5e-96 | PREDICTED: FAD synthase-like [Nicotiana tomentosiformis] | 742 | 005366 (4) | ref|XP_006354376.1| | 3e-74 | PREDICTED: uncharacterized protein LOC102579774 isoform X1 [Solanum tuberosum] |
| JMSF043I16 | Sequence | 761 | 013444 (5) | ref|XP_009598660.1| | 5e-119 | PREDICTED: FAD synthase-like [Nicotiana tomentosiformis] | 676 | 005366 (4) | ref|XP_006354376.1| | 2e-64 | PREDICTED: uncharacterized protein LOC102579774 isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF029B01+ A
rJMSF043I16+ A
rJMSF033I08+ TCTCAGGCGCATAATTGGTGGAAAATGCACTGGGGATAAGAATGA
____________________________________________________________
consensus TCTCAGGCGCATAATTGGTGGAAAATGCACTGGGGATAAGAATGA
. : . : . : . : . : . :
rJMSF029B01+ GATGGCACAGTTGCCAGAGGGTATTACAGAATTGTTGCATCATGAACAGCTGGAGGTGCC
rJMSF043I16+ GATGGCACAGTTGCCAGAGGGTATTACAGAATTGTTGCATCATGAACAGCTGGAGGTGCC
rJMSF033I08+ GATGGCACAGTTGCCAGAGGGTATTACAGAATTGTTGCATCATGAACAGCTGGAGGTGCC
rJMFF012B08+ C
____________________________________________________________
consensus GATGGCACAGTTGCCAGAGGGTATTACAGAATTGTTGCATCATGAACAGCTGGAGGTGCC
. : . : . : . : . : . :
rJMSF029B01+ TTTGATCAAGTGCCATAATGTGATCATTCTGAATGCAACAAATGTTACTGAACTGGATGA
rJMSF043I16+ TTTGATCAAGTGCCATAATGTGATCATTCTGAATGCAACAAATGTTACTGAACTGGATGA
rJMSF033I08+ TTTGATCAAGTGCCATAATGTGATCATTCTGAATGCAACAAATGTTACTGAACTGGATGA
rJMFF012B08+ TTTGATCAAGTGCCATAATGTGATCATTCTGAATGCAACAAATGTTACTGAACTGGATGA
____________________________________________________________
consensus TTTGATCAAGTGCCATAATGTGATCATTCTGAATGCAACAAATGTTACTGAACTGGATGA
. : . : . : . : . : . :
rJMSF029B01+ GCAATGGGATTGTTTAATTAAATTGACAAAATCTCAAGGTCTCCTTGAATTGGCCGAGCC
rJMSF043I16+ GCAATGGGATTGTTTAATTAAATTGACAAAATCTCAAGGTCTCCTTGAATTGGCCGAGCC
rJMSF033I08+ GCAATGGGATTGTTTAATTAAATTGACAAAATCTCAAGGTCTCCTTGAATTGGCCGAGCC
rJMFF012B08+ GCAATGGGATTGTTTAATTAAATTGACAAAATCTCAAGGTCTCCTTGAATTGGCCGAGCC
____________________________________________________________
consensus GCAATGGGATTGTTTAATTAAATTGACAAAATCTCAAGGTCTCCTTGAATTGGCCGAGCC
. : . : . : . : . : . :
rJMSF029B01+ ATTTGTATCCAAGTGCTTGGAAACGACTCTTTTTGATGTGGAAGTTGCTCAACCTCTATC
rJMSF043I16+ ATTTGTATCCAAGTGCTTGGAAACGACTCTTTTTGATGTGGAAGTTGCTCAACCTCTATC
rJMSF033I08+ ATTTGTATCCAAGTGCTTGGAAACGACTCTTTTTGATGTGGAAGTTGCTCAACCTCTATC
rJMFF012B08+ ATTTGTATCCAAGTGCTTGGAAACGACTCTTTTTGATGTGGAAGTTGCTCAACCTCTATC
____________________________________________________________
consensus ATTTGTATCCAAGTGCTTGGAAACGACTCTTTTTGATGTGGAAGTTGCTCAACCTCTATC
. : . : . : . : . : . :
rJMSF029B01+ GAAGCTGTGTCTTCAATTTCCTGACATTTACATTGGTGGCTATCGAGAATCTAGGCATGG
rJMSF043I16+ GAAGCTGTGTCTTCAATTTCCTGACATTTACATTGGTGGCTATCGAGAATCTAGGCATGG
rJMSF033I08+ GAAGCTGTGTCTTCAATTTCCTGACATTTACATTGGTGGCTATCGAGAATCTAGGCATGG
rJMFF012B08+ GAAGCTGTGTCTTCAATTTCCTGACATTTACATTGGTGGCTATCGAGAATCTAGGCATGG
____________________________________________________________
consensus GAAGCTGTGTCTTCAATTTCCTGACATTTACATTGGTGGCTATCGAGAATCTAGGCATGG
. : . : . : . : . : . :
rJMSF029B01+ CCATCTCGTGATCAGATTTGAAGGAAAGGATCTATCGCGGGTAGAAGCAGCTGCCGAAGC
rJMSF043I16+ CCATCTCGTGATCAGATTTGAAGGAAAGGATCTATCGCGGGTAGAAGCAGCTGCCGAAGC
rJMSF033I08+ CCATCTCGTGATCAGATTTGAAGGAAAGGATCTATCGCGGGTAGAAGCAGCTGCCGAAGC
rJMFF012B08+ CCATCTCGTGATCAGATTTGAAGGAAAGGATCTATCGCGGGTAGAAGCAGCTGCCGAAGC
____________________________________________________________
consensus CCATCTCGTGATCAGATTTGAAGGAAAGGATCTATCGCGGGTAGAAGCAGCTGCCGAAGC
. : . : . : . : . : . :
rJMSF029B01+ GTTGTGCAAGAGTTTCCATCCAGGTGCGTTCTCTAACGTGGACCGAGCCTGAGTATTACA
rJMSF043I16+ GTTGNGCAAGAGTTTCCATCCAGGTGCGTTCTCTAACGTGGACCGAGCCTGAGTATTACA
rJMSF033I08+ GTTGTGCAAGAGTTTCCATCCAGGTGCGTTCTCTAACGTGGACCGAGCCTGAGTATTACA
rJMFF012B08+ GTTGTGCAAGAGTTTCCATCCAGGTGCGTTCTCTAACGTGGACCGAGCCTGAGTATTACA
____________________________________________________________
consensus GTTGTGCAAGAGTTTCCATCCAGGTGCGTTCTCTAACGTGGACCGAGCCTGAGTATTACA
. : . : . : . : . : . :
rJMSF029B01+ TCCCCACCACTCCTTCCTGATCGCCATCCCAATACACTGAGCTTTCCCGATGGGGCGGGG
rJMSF043I16+ TCCCCACCACTCCTTCCTGATCGCCATCCCAATACACTGAGCTTTCCCGATGGGGCGGGG
rJMSF033I08+ TCCCCACCACTCCTTCCTGATCGCCATCCCAATACACTGAGCTTTCCCGATGGGGCGGGG
rJMFF012B08+ TCCCCACCACTCCTTCCTGATCGCCATCCCAATACACTGAGCTTTCCCGATGGGGCGGGG
____________________________________________________________
consensus TCCCCACCACTCCTTCCTGATCGCCATCCCAATACACTGAGCTTTCCCGATGGGGCGGGG
. : . : . : . : . : . :
rJMSF029B01+ CCGAATATGCAACCAAAAGCGACTTGTATATCTGCAAGTCGGACGTCTTGGGGGAAAGTG
rJMSF043I16+ CCGAATATGCAACCAAAAGCGACTTGTATATCTGCAAGTCGGACGTCTTGGGGGAAAGTG
rJMSF033I08+ CCGAATATGCAACCAAAAGCGACTTGTATATCTGCAAGTCGGACGTCTTGGGGGAAAGTG
rJMFF012B08+ CCGAATATGCAACCAAAAGCGACTTGTATATCTGCAAGTCGGACGTCTTGGGGGAAAGTG
____________________________________________________________
consensus CCGAATATGCAACCAAAAGCGACTTGTATATCTGCAAGTCGGACGTCTTGGGGGAAAGTG
. : . : . : . : . : . :
rJMSF029B01+ TTGATGATA-GTATCTCTCTCATGTGACTATGGAGGATGATGGGGGAAAGATTAGAAAGA
rJMSF043I16+ TTGATGATACGTATCTCTCTCATGTGACTATGGAGGATGANGGGGGAAAGATTAGAAAGA
rJMSF033I08+ TTGATGATA-GTATCTCTCTCATGTGACTATGGAGGATGATGGGGGAAAGATTAGAAAGA
rJMFF012B08+ TTGATGATA-GTATCTCTCTCATGTGACTATGGAGGATGATGGGGGAAAGATTAGAAAGA
____________________________________________________________
consensus TTGATGATA-GTATCTCTCTCATGTGACTATGGAGGATGATGGGGGAAAGATTAGAAAGA
. : . : . : . : . : . :
rJMSF029B01+ GAAATAGAGAAACCATTAATATGAATGAAGAATATCCATTATTATAATTGAAATGTAGTT
rJMSF043I16+ GAAATAGAGAAACCATTAATATGAATGAAGAATATCC
rJMSF033I08+ GAAATAGAGAAACCATTAATATGAATGAAGAATATCCATTATTATAATTGAAATGTAGTT
rJMFF012B08+ GAAATAGAGAAACCATTAATATGAATGAAGAATATCCATTATTATAATTGAAATGTAGTT
____________________________________________________________
consensus GAAATAGAGAAACCATTAATATGAATGAAGAATATCCATTATTATAATTGAAATGTAGTT
. : . : . : . : . : . :
rJMSF029B01+ TTACTTTATTGCAACTGAAAGAGGGATGTTCAAATAT
rJMSF033I08+ TTACTTTATTGCAACTGAAAGAGGGATGTTCAAATAT
rJMFF012B08+ TTACTTTATTGCAACTGAAAGAGGGATGTTCAAATATATTGTCTGACAAGAAGTATCTGA
____________________________________________________________
consensus TTACTTTATTGCAACTGAAAGAGGGATGTTCAAATATATTGTCTGACAAGAAGTATCTGA
. : . : . : . : . : . :
rJMFF012B08+ CAGCTTTAATTTGTTGAAACAATGGTTTTCATTTATTTATAGCTCTATATAATATAAAGC
____________________________________________________________
consensus CAGCTTTAATTTGTTGAAACAATGGTTTTCATTTATTTATAGCTCTATATAATATAAAGC