Contig 005365:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011L05Sequence548000872 (7)dbj|BAD91200.1|6e-25sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter 667005365 (6)dbj|BAD91200.1|6e-52sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMFF015P23Sequence500000872 (7)dbj|BAD91200.1|1e-12sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter 611005365 (6)dbj|BAD91200.1|1e-37sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMFN009D20Sequence640005365 (6)dbj|BAD91200.1|4e-67sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMSF001D04Sequence315000872 (7)760005365 (6)dbj|BAD91200.1|7e-82sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMSF026H12Sequence653000872 (7)dbj|BAD91200.1|2e-47sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter 761005365 (6)dbj|BAD91200.1|9e-114sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter
JMSF036F23Sequence672000872 (7)dbj|BAD91200.1|5e-53sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter 692005365 (6)dbj|BAD91200.1|9e-61sodium proton antiporter [Ipomoea nil] dbj|BAD91201.1| sodium proton antiporter

Alignment

This contig is upended


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rJMSF026H12+                                                                  CCGG
                      ____________________________________________________________
consensus                                                                     CCGG
 
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rJMSF026H12+          GGTGAAAAGATTGGATTTAGGCAGCAGTTTATAATATGGTGGGCTGGGCTTATGCGAGGT
                      ____________________________________________________________
consensus             GGTGAAAAGATTGGATTTAGGCAGCAGTTTATAATATGGTGGGCTGGGCTTATGCGAGGT
 
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rJMSF026H12+          GCTGTTTCAATGGCTCTTGCATATAACCAGTTTACAAGGTCTGGCTACACCCAGTTACGT
rJMSF001D04+                                                           CCCAGTTACGT
                      ____________________________________________________________
consensus             GCTGTTTCAATGGCTCTTGCATATAACCAGTTTACAAGGTCTGGCTACACCCAGTTACGT
 
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rJMSF026H12+          GAGAATGCAATAATGATCACGAGCACAATTACAGTTGTTCTTTTCAGCACTGTGGTTTTT
JMFN009D20-                                                                GGTTTTT
rJMSF001D04+          GAGAATGCAATAATGATCACGAGCACAATTACAGTTGTTCTTTTCAGCACTGTGGTTTTT
                      ____________________________________________________________
consensus             GAGAATGCAATAATGATCACGAGCACAATTACAGTTGTTCTTTTCAGCACTGTGGTTTTT
 
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rJMSF026H12+          GGTTTGATAACCAAACCTTTGATCAGGGTCTTGCTGCCCACACCAAAACACCTAAACAGA
JMFN009D20-           GGTTTGATAACCAAACCTTTGATCAGGGTCTTGCTGCCCACACCAAAACACCTAAACAGA
rJMSF001D04+          GGTTTGATAACCAAACCTTTGATCAGGGTCTTGCTGCCCACACCAAAACACCTAAACAGA
rJMSF036F23+                       AACCTTTGATCAGGGTCTTGCTGCCCACACCAAANCACCTAAACAGA
rJMFF011L05+                                                              TAAACAGA
                      ____________________________________________________________
consensus             GGTTTGATAACCAAACCTTTGATCAGGGTCTTGCTGCCCACACCAAAACACCTAAACAGA
 
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rJMSF026H12+          ATGGTGTCTTCTGAACCAGTCACTCCAAAATCCTTCACTGTGCCTCTTCTGGATTCAGAG
JMFN009D20-           ATGGTGTCTTCTGAACCAGTCACTCCAAAATCCTTCACTGTGCCTCTTCTGGATTCAGAG
rJMSF001D04+          ATGGTGTCTTCTGAACCAGTCACTCCAAAATCCTTCACTGTGCCTCTTCTGGATTCAGAG
rJMSF036F23+          ATGGTGTCTTCTGAACCAGTCACTCCAAAATCCTTCACTGTGCCTCTTCTGGATTCAGAG
rJMFF015P23+                                                           TGGATTCAGAG
rJMFF011L05+          ATGGTGTCTTCTGAACCAGTCACTCCAAAATCCTTCACTGTGCCTCTTCTGGATTCAGAG
                      ____________________________________________________________
consensus             ATGGTGTCTTCTGAACCAGTCACTCCAAAATCCTTCACTGTGCCTCTTCTGGATTCAGAG
 
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rJMSF026H12+          GCCGACCTAGATGGCCATGTGCCACGTCCAAACAGCTTGCGCATGCTGCTGACAACACCA
JMFN009D20-           GCCGACCTAGATGGCCATGTGCCACGTCCAAACAGCTTGCGCATGCTGCTGACAACACCA
rJMSF001D04+          GCCGACCTAGATGGCCATGTGCCACGTCCAAACAGCTTGCGCATGCTGCTGACAACACCA
rJMSF036F23+          GCCGACCTAGATGGCCATGTGCCACGTCCAAACAGCTTGCGCATGCTGCTGACAACACCA
rJMFF015P23+          GCCGACCTAGATGGCCATGTGCCACGTCCAAACAGCTTGCGCATGCTGCTGACAACACCA
rJMFF011L05+          GCCGACCTAGATGGCCATGTGCCACGTCCAAACAGCTTGCGCATGCTGCTGACAACACCA
                      ____________________________________________________________
consensus             GCCGACCTAGATGGCCATGTGCCACGTCCAAACAGCTTGCGCATGCTGCTGACAACACCA
 
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rJMSF026H12+          TCTCACACGGCCCACTACTATTGGAGAAAATTCGACGATGCATTCATGCGACCTGTCTTT
JMFN009D20-           TCTCACACGGCCCACTACTATTGGAGAAAATTCGACGATGCATTCATGCGACCTGTCTTT
rJMSF001D04+          TCTCACACGGCCCACTACTATTGGAGAAAATTCGACGATGCATTCATGCGACCTGTCTTT
rJMSF036F23+          TCTCACACGGCCCACTACTATTGGAGAAAATTCGACGATGCATTCATGCGACCTGTCTTT
rJMFF015P23+          TNTCACACGGCCCACTACTATTGGAGAAAATTCGACGATGCATTCATGCGACCTGTCTTT
rJMFF011L05+          TCTCACACGGCCCACTACTATTGGAGAAAATTCGACGATGCATTCATGCGACCTGTCTTT
                      ____________________________________________________________
consensus             TCTCACACGGCCCACTACTATTGGAGAAAATTCGACGATGCATTCATGCGACCTGTCTTT
 
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rJMSF026H12+          GGTGGACGAGGCTTTGTACCATATGTCCCTGGCTCACCTACTGAACAGAATGAACCACAA
JMFN009D20-           GGTGGACGAGGCTTTGTACCATATGTCCCTGGCTCACCTACTGAACAGAATGAACCACAA
rJMSF001D04+          GGTGGACGAGGCTTTGTACCATATGTCCCTGGCTCACCTACTGAACAGAATGAACCACAA
rJMSF036F23+          GGTGGACGAGGCTTTGTACCATATGTCCCTGGCTCACCTACTGAACAGAATGAACCACAA
rJMFF015P23+          GGTGGACGAGGCTTTGTACCATATGTCCCTGGCTCACCTACTGAACAGAATGAACCACAA
rJMFF011L05+          GGTGGACGAGGCTTTGTACCATATGTCCCTGGCTCACCTACTGAACAGAATGAACCACAA
                      ____________________________________________________________
consensus             GGTGGACGAGGCTTTGTACCATATGTCCCTGGCTCACCTACTGAACAGAATGAACCACAA
 
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rJMSF026H12+          TGGCAGTGAAAGAGAAGCACTGTACTACACTATATGCCCCGTGAACAGAATGAACAACAA
JMFN009D20-           TGGCAGTGAAAGAGAAGCACTGTACTACACTATATGCCCCGTGAACAGAATGAACAACAA
rJMSF001D04+          TGGCAGTGAAAGAGAAGCACTGTACTACACTATATGCCCCGTGAACAGAATGAACAACAA
rJMSF036F23+          TGGCAGTGAAAGAGAAGCACTGTACTACACTATATGCCCCGTGAACAGAATGAACAACAA
rJMFF015P23+          TGGCAGTGAAAGAGAAGCACTGTACTACACTATATGCCCCGTGAACAGAATGAACAACAA
rJMFF011L05+          TGGCAGTGAAAGAGAAGCACTGTACTACACTATATGCCCCGTGAACAGAATGAACAACAA
                      ____________________________________________________________
consensus             TGGCAGTGAAAGAGAAGCACTGTACTACACTATATGCCCCGTGAACAGAATGAACAACAA
 
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rJMSF026H12+          TGGGCGCACTGAAAGAGTGCACTATCTGCCCGCCCATCCTCGACATGGG-AAAAAAGTTT
JMFN009D20-           TGGGCGCACTGAAAGAGTGCACTATCTGCCCGCCCATCCTCGACATGGG-AAAAAAGTTT
rJMSF001D04+          TGGGCGCACTGAAAGAGTGCACTATCTGCCCGCCCATCCTCGACATGGGAAAAAAAGTTT
rJMSF036F23+          TGGGCGCACTGAAAGAGTGCACTATCTGCCCGCCCATCCTCGACATGGG-AAAAAAGTTT
rJMFF015P23+          TGGGCGCACTGAAAGAGTGCACTATCTGCCCGCCCATCCTCGACATGGG-AAAAAAGTTT
rJMFF011L05+          TGGGCGCACTGAAAGAGTGCACTATCTGCCCGCCCATCCTCGACATGGG-AAAAAAGTTT
                      ____________________________________________________________
consensus             TGGGCGCACTGAAAGAGTGCACTATCTGCCCGCCCATCCTCGACATGGG-AAAAAAGTTT
 
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rJMSF026H12+          TACTTTGGTTGCATTTTGTAGTTTTGTTTCCTGTTAATATTTTTTGTATGTCTGAGTAAA
JMFN009D20-           TACTTTGGTTGCATTTTGTAGTTTTGTTTCCTGTTAATATTTTTTGTATGTCTGAGTAAA
rJMSF001D04+          TACTTTGGTTGCATTTTGTAGTTTTGTTTCCTGTTAATATTTTTTGTATGTCTGAGTAAA
rJMSF036F23+          TACTTTGGTTGCATTTTGTAGTTTTGTTTCCTGTTAATATTTTTTGTATGTCTGAGTAAA
rJMFF015P23+          TACTTTGGTTGCATTTTGTAGTTTTGTTTCCTGTTAATATTTTTT-TATGTCTGAGTAAA
rJMFF011L05+          TACTTTGGTTGCATTTTGTAGTTTTGTTTCCTGTTAATATTTTTTGTATGTCTGAGTAAA
                      ____________________________________________________________
consensus             TACTTTGGTTGCATTTTGTAGTTTTGTTTCCTGTTAATATTTTTTGTATGTCTGAGTAAA
 
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rJMSF026H12+          TCAGCAATGATAGCATTAGGGTGTCGACTTTATAGATTGGCAAGTAGAAGTGTGCTTATT
JMFN009D20-           TCAGCAATGATAGCATTAGGGTGTCGACTTTATAGATTGGCAAGTAGAAGTGTGCTTATT
rJMSF001D04+          TCAGCAATGATAGCATTAGGGTGTCGACTTTATAGATTGGCAAGTAGAAGTGTGCTTATT
rJMSF036F23+          TCAGCAATGATAGCATTAGGGTGTCGACTTTATAGATTGGCAAGTAGAAGTGTGCTTATT
rJMFF015P23+          TCAGCAATGATAGCATTAGGGTGTCGACTTTATAGATTGGCAAGTAGAAGTGTGCTTATT
rJMFF011L05+          TCAGCAATGATAGCATTAGGGTGTCGACTTTATAGATTGGCAAGTAGAAGTGTGCTTATT
                      ____________________________________________________________
consensus             TCAGCAATGATAGCATTAGGGTGTCGACTTTATAGATTGGCAAGTAGAAGTGTGCTTATT
 
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rJMSF026H12+          TTTGGTATGATTTCACTTTTCAGTTAGTTCTTTACTGT                      
JMFN009D20-           TTTGGTATGATTTCACTTTTCAGTTAGTTCTTTACTGTGGGCAACACTGAGCCATTCATC
rJMSF001D04+          TTTGGTATGATTTCACTTTTCAGTTAGTTCTTTACTGTGGGCAACACTGAGCCATTCATC
rJMSF036F23+          TTTGGTATGATTTCACTTTTCAGTTAGTTCTTTACTGTGGGCAACACTGAGCCATTCATC
rJMFF015P23+          TTTGGTATGATTTCACTTTTCAGTTAGTTCTTTACTGTGGGCAACACTGAGCCATTCATC
rJMFF011L05+          TTTGGTATGATTTCACTTTTCAGTTAGTTCTTTACTGTGGGCAACACTGAGCCATTCATC
                      ____________________________________________________________
consensus             TTTGGTATGATTTCACTTTTCAGTTAGTTCTTTACTGTGGGCAACACTGAGCCATTCATC
 
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JMFN009D20-           AGTATATGGCATTTGCTAAATTCCCA                                  
rJMSF001D04+          AGTATATGGCATTTGCTAAATTCCCAATTCAGAGGCCTTTCTATAAACCACCAAATGGGT
rJMSF036F23+          AGTATATGGCATTTGCTAAATTCCCAATTCAGAGGCCTTTCTATAAACCACCAAATGGGT
rJMFF015P23+          AGTATATGGCATTTGCTAAATTCCCAATTCAGAGGCCTTTCTATAAACCACCAAATGGGT
rJMFF011L05+          AGTATATGGCATTTGCTAAATTCCCAATTCAGAGGCCTTTCTATAAACCACCAAATGGGT
                      ____________________________________________________________
consensus             AGTATATGGCATTTGCTAAATTCCCAATTCAGAGGCCTTTCTATAAACCACCAAATGGGT
 
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rJMSF001D04+          GTGTAATTTGTATGTAAACGTCTCCATGT                               
rJMSF036F23+          GTGTAATTTGTATGTAAACGTCTCCATGT                               
rJMFF015P23+          GTGTAATTTGTATGTAAACGTCTCCATGTTGTATTTAAACATTTCTGAATTTTTATTTAT
rJMFF011L05+          GTGTAATTTGTATGTAAACGTCTCCATGTTGTATTTAAACATTTCTGAATTTTTATTTAT
                      ____________________________________________________________
consensus             GTGTAATTTGTATGTAAACGTCTCCATGTTGTATTTAAACATTTCTGAATTTTTATTTAT